Wall clock time and date at job start Sat Apr 11 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.70206 * 2 1 4 4 C 1.53187 * 109.58907 * 120.36132 * 2 1 3 5 5 C 1.53037 * 109.31619 * 65.14835 * 4 2 1 6 6 H 1.09004 * 109.45079 * 301.35916 * 5 4 2 7 7 N 1.46498 * 109.46456 * 181.38992 * 5 4 2 8 8 C 1.36932 * 120.00201 * 154.93566 * 7 5 4 9 9 H 1.08004 * 119.99952 * 359.71430 * 8 7 5 10 10 C 1.38807 * 120.00314 * 180.02562 * 8 7 5 11 11 N 1.31624 * 119.99655 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00452 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47114 * 59.99380 * 12 10 8 14 14 H 1.48498 * 109.47192 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.46870 * 299.99775 * 12 10 8 16 16 C 1.53049 * 109.53720 * 61.36419 * 5 4 2 17 17 C 1.53192 * 109.31388 * 298.63887 * 16 5 4 18 18 N 1.46921 * 109.58462 * 239.65080 * 2 1 3 19 19 C 1.34781 * 120.63421 * 113.84477 * 18 2 1 20 20 O 1.21605 * 120.00340 * 175.03345 * 19 18 2 21 21 C 1.47430 * 119.99871 * 355.03201 * 19 18 2 22 22 C 1.38752 * 120.33333 * 310.36079 * 21 19 18 23 23 C 1.38866 * 120.72480 * 179.69323 * 22 21 19 24 24 C 1.36350 * 121.05545 * 0.60946 * 23 22 21 25 25 C 1.40434 * 120.08742 * 359.67310 * 24 23 22 26 26 C 1.40806 * 121.26300 * 180.02562 * 25 24 23 27 27 C 1.36633 * 118.15189 * 180.02562 * 26 25 24 28 28 C 1.39225 * 119.91067 * 359.97438 * 27 26 25 29 29 N 1.31225 * 121.69836 * 0.02562 * 28 27 26 30 30 C 1.33358 * 121.35254 * 359.97438 * 29 28 27 31 31 H 1.08991 * 109.47426 * 180.35090 * 1 2 3 32 32 H 1.09006 * 109.46830 * 300.35011 * 1 2 3 33 33 H 1.08996 * 109.47296 * 60.34814 * 1 2 3 34 34 H 1.09004 * 109.49494 * 305.20167 * 4 2 1 35 35 H 1.08999 * 109.49984 * 185.10323 * 4 2 1 36 36 H 0.96997 * 119.99268 * 334.92933 * 7 5 4 37 37 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.49269 * 58.58517 * 16 5 4 39 39 H 1.08998 * 109.49414 * 178.68711 * 16 5 4 40 40 H 1.08994 * 109.58676 * 174.41482 * 17 16 5 41 41 H 1.08997 * 109.58632 * 294.70972 * 17 16 5 42 42 H 1.08004 * 119.63200 * 359.97438 * 22 21 19 43 43 H 1.08000 * 119.46793 * 180.33092 * 23 22 21 44 44 H 1.07998 * 119.95196 * 179.70106 * 24 23 22 45 45 H 1.08004 * 120.92560 * 0.02562 * 26 25 24 46 46 H 1.08001 * 120.04422 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.15569 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 1.6415 -2.2041 1.1700 6 1 0.5565 -2.2814 1.0990 7 7 2.1023 -2.8979 2.3752 8 6 1.4641 -4.0333 2.7979 9 1 0.6181 -4.4148 2.2454 10 6 1.9004 -4.6904 3.9401 11 7 2.9280 -4.2223 4.6166 12 14 1.0294 -6.2389 4.5172 13 1 1.1062 -7.2747 3.4560 14 1 1.6841 -6.7447 5.7504 15 1 -0.3942 -5.9284 4.8037 16 6 2.2800 -2.8464 -0.0638 17 6 1.7691 -2.1409 -1.3240 18 7 2.0225 -0.6994 -1.1945 19 6 2.6944 -0.0316 -2.1532 20 8 3.1751 -0.6362 -3.0924 21 6 2.8466 1.4321 -2.0633 22 6 1.7427 2.2380 -1.8238 23 6 1.8778 3.6170 -1.7313 24 6 3.0926 4.2166 -1.8848 25 6 4.2351 3.4390 -2.1343 26 6 5.5018 4.0322 -2.2963 27 6 6.5702 3.2153 -2.5372 28 6 6.3868 1.8374 -2.6153 29 7 5.2042 1.2895 -2.4635 30 6 4.1213 2.0308 -2.2263 31 1 -0.3634 -1.0275 0.0063 32 1 -0.3633 0.5193 0.8869 33 1 -0.3634 0.5084 -0.8930 34 1 1.6075 -0.2786 2.1368 35 1 3.1297 -0.6504 1.2912 36 1 2.8596 -2.5530 2.8736 37 1 3.2326 -4.6813 5.4150 38 1 3.3639 -2.7474 -0.0056 39 1 2.0121 -3.9022 -0.1040 40 1 2.2943 -2.5273 -2.1974 41 1 0.6991 -2.3175 -1.4332 42 1 0.7686 1.7874 -1.7037 43 1 1.0058 4.2244 -1.5390 44 1 3.1764 5.2910 -1.8141 45 1 5.6254 5.1033 -2.2320 46 1 7.5556 3.6379 -2.6668 47 1 7.2398 1.2031 -2.8067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044663533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:06 Heat of formation + Delta-G solvation = 16.204484 kcal Electronic energy + Delta-G solvation = -29573.568534 eV Core-core repulsion = 25720.503442 eV Total energy + Delta-G solvation = -3853.065092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16060 -41.02404 -38.91163 -37.95599 -36.30350 -34.57282 -33.80499 -33.14691 -31.68645 -31.52296 -30.57483 -28.68896 -26.11846 -25.63035 -24.91887 -24.46449 -23.57584 -23.23511 -21.62914 -19.85761 -19.38084 -19.09485 -18.31067 -17.85215 -17.51605 -16.75747 -16.63364 -16.16396 -15.86708 -15.55793 -15.41217 -15.27067 -15.20338 -14.96686 -14.76463 -14.42032 -14.34848 -14.02840 -13.86331 -13.72475 -13.21891 -13.14191 -12.92120 -12.82158 -12.75429 -12.62292 -12.44351 -12.27313 -12.22654 -12.04453 -11.95398 -11.68780 -11.52906 -11.28416 -10.94893 -10.88653 -10.31651 -9.78490 -9.71209 -9.23691 -9.02418 -7.93656 -5.22752 -0.75919 -0.17116 0.80946 1.46872 1.50035 1.55752 1.64460 1.88416 2.10697 2.56227 3.10398 3.26842 3.37193 3.39488 3.68758 3.75625 3.80480 3.83880 3.95371 4.04196 4.05521 4.09194 4.17879 4.21997 4.31256 4.42121 4.48762 4.51580 4.52949 4.66728 4.68402 4.77061 4.87909 4.91670 4.96196 5.01684 5.04666 5.07479 5.10722 5.22425 5.25037 5.33334 5.39250 5.50252 5.52022 5.57565 5.63093 5.85057 6.27686 6.38243 7.00776 7.13304 7.33491 8.08638 8.32320 9.29869 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.002799 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.690481 B = 9999.397279 C =10355.358532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.105 0.895 4 C -0.125 4.125 5 C 0.179 3.821 6 H 0.062 0.938 7 N -0.737 5.737 8 C -0.237 4.237 9 H 0.079 0.921 10 C -0.077 4.077 11 N -0.972 5.972 12 Si 0.972 3.028 13 H -0.281 1.281 14 H -0.298 1.298 15 H -0.274 1.274 16 C -0.139 4.139 17 C 0.123 3.877 18 N -0.596 5.596 19 C 0.563 3.437 20 O -0.571 6.571 21 C -0.143 4.143 22 C -0.055 4.055 23 C -0.124 4.124 24 C -0.060 4.060 25 C -0.127 4.127 26 C -0.047 4.047 27 C -0.177 4.177 28 C 0.120 3.880 29 N -0.521 5.521 30 C 0.128 3.872 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.369 0.631 37 H 0.250 0.750 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.154 0.846 43 H 0.176 0.824 44 H 0.177 0.823 45 H 0.185 0.815 46 H 0.175 0.825 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.545 25.538 -14.884 29.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.123 0.877 4 C -0.164 4.164 5 C 0.070 3.930 6 H 0.080 0.920 7 N -0.376 5.376 8 C -0.369 4.369 9 H 0.096 0.904 10 C -0.269 4.269 11 N -0.623 5.623 12 Si 0.801 3.199 13 H -0.207 1.207 14 H -0.224 1.224 15 H -0.200 1.200 16 C -0.180 4.180 17 C 0.000 4.000 18 N -0.328 5.328 19 C 0.353 3.647 20 O -0.451 6.451 21 C -0.147 4.147 22 C -0.075 4.075 23 C -0.141 4.141 24 C -0.079 4.079 25 C -0.129 4.129 26 C -0.073 4.073 27 C -0.196 4.196 28 C -0.051 4.051 29 N -0.229 5.229 30 C 0.006 3.994 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.200 0.800 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.171 0.829 43 H 0.194 0.806 44 H 0.194 0.806 45 H 0.202 0.798 46 H 0.192 0.808 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.647 24.128 -15.389 28.665 hybrid contribution 0.748 -0.934 0.738 1.406 sum -0.898 23.194 -14.651 27.448 Atomic orbital electron populations 1.22237 0.92262 1.03418 1.03965 1.21542 0.96216 0.96348 0.82301 0.87674 1.22099 1.00026 0.95883 0.98398 1.20404 0.97069 0.90355 0.85148 0.92004 1.42658 1.37441 1.29345 1.28158 1.19598 1.09660 1.01592 1.06019 0.90355 1.25560 0.99668 1.02803 0.98905 1.69827 1.29516 1.42950 1.19994 0.85235 0.78041 0.79667 0.76977 1.20719 1.22440 1.19966 1.22468 0.99381 1.00029 0.96096 1.21508 1.01368 0.79398 0.97743 1.48209 1.55040 1.09127 1.20463 1.18457 0.76692 0.87702 0.81855 1.90725 1.48818 1.70184 1.35378 1.19767 0.94187 0.92498 1.08235 1.21847 0.97621 0.94884 0.93125 1.21290 0.99712 0.93334 0.99813 1.21667 0.90486 1.01651 0.94065 1.19166 0.97444 0.92582 1.03743 1.22020 0.89990 1.02445 0.92800 1.22265 1.02279 0.93673 1.01423 1.23524 0.94309 0.95046 0.92255 1.68033 1.00125 1.41379 1.13375 1.18894 0.91848 0.90885 0.97797 0.92306 0.89161 0.90285 0.89735 0.94251 0.79956 0.94154 0.95217 0.92083 0.91085 0.89171 0.82891 0.80628 0.80556 0.79794 0.80769 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.76 71.98 0.63 -2.49 16 2 C 0.14 3.59 2.39 44.97 0.11 3.70 16 3 H 0.11 2.42 5.14 -2.39 -0.01 2.41 16 4 C -0.13 -4.17 5.02 30.67 0.15 -4.01 16 5 C 0.18 7.08 2.52 45.02 0.11 7.19 16 6 H 0.06 2.35 6.43 -2.38 -0.02 2.33 16 7 N -0.74 -37.78 5.12 -322.81 -1.65 -39.44 16 8 C -0.24 -13.18 9.93 84.03 0.83 -12.34 16 9 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 10 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 11 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 12 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 16 C -0.14 -5.46 5.66 30.67 0.17 -5.28 16 17 C 0.12 4.07 6.02 86.36 0.52 4.59 16 18 N -0.60 -18.67 2.68 -798.87 -2.14 -20.81 16 19 C 0.56 19.77 6.94 86.66 0.60 20.37 16 20 O -0.57 -24.87 15.98 -4.05 -0.06 -24.93 16 21 C -0.14 -4.05 4.83 -19.86 -0.10 -4.14 16 22 C -0.05 -1.00 7.53 22.54 0.17 -0.83 16 23 C -0.12 -1.40 9.93 21.98 0.22 -1.18 16 24 C -0.06 -0.68 9.75 22.36 0.22 -0.47 16 25 C -0.13 -2.40 5.74 -21.29 -0.12 -2.53 16 26 C -0.05 -0.61 9.90 22.52 0.22 -0.39 16 27 C -0.18 -2.58 10.03 22.13 0.22 -2.36 16 28 C 0.12 2.78 11.15 85.02 0.95 3.73 16 29 N -0.52 -17.01 9.41 -187.97 -1.77 -18.78 16 30 C 0.13 3.68 6.59 40.61 0.27 3.95 16 31 H 0.06 1.31 5.73 -2.39 -0.01 1.29 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.16 6.54 -2.39 -0.02 1.15 16 34 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.37 20.68 7.80 -92.71 -0.72 19.96 16 37 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.58 6.99 -2.39 -0.02 2.56 16 41 H 0.09 2.53 7.51 -2.39 -0.02 2.51 16 42 H 0.15 2.19 5.59 -2.91 -0.02 2.18 16 43 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 44 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 45 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 46 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 47 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -84.54 374.18 2.62 -81.92 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.28 Total: 30.19 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 5.65 Total: 3.49 kcal Atomic # 7 Polarization: -133.96 SS G_CDS: -5.28 Total: -139.24 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.06 Total: -24.93 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -84.54 2.62 -81.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044663533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.127 kcal (2) G-P(sol) polarization free energy of solvation -84.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds