Wall clock time and date at job start Sat Apr 11 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.69828 * 2 1 4 4 C 1.53194 * 109.58871 * 120.35053 * 2 1 3 5 5 C 1.53040 * 109.31658 * 174.42392 * 4 2 1 6 6 H 1.08998 * 109.44447 * 58.64626 * 5 4 2 7 7 N 1.46496 * 109.46100 * 178.61713 * 5 4 2 8 8 C 1.36942 * 119.99943 * 205.07264 * 7 5 4 9 9 H 1.07993 * 119.99811 * 359.72036 * 8 7 5 10 10 C 1.38810 * 119.99881 * 179.72764 * 8 7 5 11 11 N 1.31619 * 119.99969 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99970 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46961 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47474 * 119.99345 * 12 10 8 15 15 H 1.48498 * 109.47103 * 240.00066 * 12 10 8 16 16 C 1.53036 * 109.53829 * 298.63963 * 5 4 2 17 17 C 1.53196 * 109.31521 * 61.36192 * 16 5 4 18 18 N 1.46925 * 109.58867 * 239.64289 * 2 1 3 19 19 C 1.34767 * 120.63220 * 6.62627 * 18 2 1 20 20 O 1.21607 * 120.00050 * 355.19422 * 19 18 2 21 21 C 1.47438 * 120.00394 * 175.19939 * 19 18 2 22 22 C 1.38741 * 120.32740 * 321.07734 * 21 19 18 23 23 C 1.38868 * 120.72068 * 179.97438 * 22 21 19 24 24 C 1.36346 * 121.06220 * 0.02562 * 23 22 21 25 25 C 1.40442 * 120.08579 * 359.97438 * 24 23 22 26 26 C 1.40806 * 121.26895 * 180.02562 * 25 24 23 27 27 C 1.36642 * 118.14958 * 179.26082 * 26 25 24 28 28 C 1.39232 * 119.90908 * 0.71316 * 27 26 25 29 29 N 1.31231 * 121.69720 * 359.49748 * 28 27 26 30 30 C 1.33360 * 121.35009 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47048 * 176.05523 * 1 2 3 32 32 H 1.08998 * 109.47696 * 296.05675 * 1 2 3 33 33 H 1.09001 * 109.47194 * 56.05684 * 1 2 3 34 34 H 1.09000 * 109.49620 * 54.47167 * 4 2 1 35 35 H 1.09006 * 109.49737 * 294.37924 * 4 2 1 36 36 H 0.96999 * 119.99891 * 24.79284 * 7 5 4 37 37 H 0.97000 * 119.99683 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.50075 * 181.31788 * 16 5 4 39 39 H 1.09005 * 109.49661 * 301.41245 * 16 5 4 40 40 H 1.08998 * 109.58737 * 65.15080 * 17 16 5 41 41 H 1.09002 * 109.58804 * 185.43643 * 17 16 5 42 42 H 1.08001 * 119.64021 * 0.02562 * 22 21 19 43 43 H 1.08006 * 119.46660 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.96196 * 179.97438 * 24 23 22 45 45 H 1.07994 * 120.91823 * 359.95786 * 26 25 24 46 46 H 1.07995 * 120.03737 * 180.20509 * 27 26 25 47 47 H 1.08001 * 119.14970 * 179.48197 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8479 1.1703 6 1 4.0058 0.1476 1.0992 7 7 4.0651 -1.5156 2.3755 8 6 5.3492 -1.2973 2.7984 9 1 5.9964 -0.6365 2.2409 10 6 5.8189 -1.9256 3.9436 11 7 5.0300 -2.7307 4.6232 12 14 7.5707 -1.6285 4.5202 13 1 8.2460 -0.6900 3.5883 14 1 7.5502 -1.0428 5.8846 15 1 8.3087 -2.9169 4.5454 16 6 3.9570 -1.6656 -0.0633 17 6 3.4651 -0.9469 -1.3236 18 7 2.0225 -0.6996 -1.1944 19 6 1.1675 -1.1062 -2.1535 20 8 -0.0310 -0.9739 -1.9956 21 6 1.6851 -1.7117 -3.3942 22 6 2.8358 -1.2149 -3.9892 23 6 3.3308 -1.7792 -5.1574 24 6 2.7019 -2.8335 -5.7509 25 6 1.5341 -3.3675 -5.1821 26 6 0.8649 -4.4561 -5.7735 27 6 -0.2571 -4.9347 -5.1578 28 6 -0.7153 -4.3365 -3.9870 29 7 -0.0904 -3.3191 -3.4423 30 6 1.0151 -2.8109 -3.9882 31 1 -0.3633 -1.0252 -0.0707 32 1 -0.3634 0.4514 0.9232 33 1 -0.3633 0.5738 -0.8525 34 1 1.6030 -1.7252 1.2915 35 1 1.7659 -0.1667 2.1369 36 1 3.4838 -2.1091 2.8762 37 1 5.3582 -3.1694 5.4237 38 1 5.0412 -1.7695 -0.1035 39 1 3.4983 -2.6527 -0.0050 40 1 3.9903 0.0021 -1.4316 41 1 3.6542 -1.5706 -2.1973 42 1 3.3527 -0.3806 -3.5384 43 1 4.2280 -1.3761 -5.6036 44 1 3.1022 -3.2584 -6.6595 45 1 1.2347 -4.9074 -6.6823 46 1 -0.7923 -5.7707 -5.5832 47 1 -1.6081 -4.7194 -3.5152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044663536.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:17 Heat of formation + Delta-G solvation = 58.821269 kcal Electronic energy + Delta-G solvation = -29531.872868 eV Core-core repulsion = 25680.655778 eV Total energy + Delta-G solvation = -3851.217090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30238 -40.00240 -37.36136 -37.14042 -34.45331 -33.93378 -32.53651 -31.88541 -30.80967 -30.17746 -29.12943 -27.00063 -24.94464 -24.23887 -23.93047 -23.44400 -22.74522 -21.43888 -20.09107 -19.14930 -18.59558 -17.28902 -17.10263 -16.99770 -16.18376 -15.71053 -15.24085 -15.00446 -14.78618 -14.37341 -14.25953 -14.23257 -13.82317 -13.72431 -13.44674 -13.27266 -13.13495 -12.93116 -12.51155 -12.29936 -12.19423 -11.94548 -11.82393 -11.66001 -11.46895 -11.27238 -10.91591 -10.81667 -10.71244 -10.68584 -10.38749 -10.19462 -9.80947 -9.71437 -9.63047 -9.04789 -8.89083 -8.83148 -8.47617 -8.27659 -6.96224 -5.76767 -3.05831 -0.04034 0.55884 1.56436 2.55233 2.95735 3.21789 3.42278 3.47485 3.50105 3.92353 4.05040 4.24131 4.46603 4.49967 4.57721 4.61919 4.69418 4.81660 4.99870 5.06668 5.15048 5.23524 5.31387 5.40062 5.45126 5.53072 5.58915 5.60477 5.66121 5.68626 5.74463 5.88028 5.93006 5.97762 6.04137 6.09483 6.18819 6.22186 6.31768 6.44250 6.51424 6.52012 6.56587 6.61862 6.84245 6.97188 7.09787 7.61281 7.69177 7.80023 8.41428 8.41923 9.52614 10.10882 10.45637 11.45891 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.002885 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.212677 B = 9701.881029 C =10235.212345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.150 3.850 3 H 0.070 0.930 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.150 4.150 17 C 0.096 3.904 18 N -0.599 5.599 19 C 0.561 3.439 20 O -0.508 6.508 21 C -0.100 4.100 22 C -0.069 4.069 23 C -0.124 4.124 24 C -0.078 4.078 25 C -0.110 4.110 26 C -0.058 4.058 27 C -0.176 4.176 28 C 0.133 3.867 29 N -0.449 5.449 30 C 0.162 3.838 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.645 -0.229 -24.504 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.047 3.953 3 H 0.088 0.912 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.369 4.369 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.191 4.191 17 C -0.028 4.028 18 N -0.333 5.333 19 C 0.349 3.651 20 O -0.384 6.384 21 C -0.104 4.104 22 C -0.089 4.089 23 C -0.142 4.142 24 C -0.096 4.096 25 C -0.113 4.113 26 C -0.084 4.084 27 C -0.196 4.196 28 C -0.039 4.039 29 N -0.155 5.155 30 C 0.039 3.961 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.159 0.841 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.353 0.379 -23.545 24.986 hybrid contribution 1.345 -0.695 -0.255 1.536 sum -7.008 -0.316 -23.800 24.813 Atomic orbital electron populations 1.22204 0.92773 1.03891 1.00259 1.21305 0.95495 0.94787 0.83684 0.91170 1.22301 0.97479 1.01057 0.96568 1.20161 0.90980 0.94859 0.87082 0.93490 1.42446 1.12867 1.54494 1.26624 1.19275 0.89102 1.22318 1.06228 0.91135 1.24752 0.98133 0.99939 0.98187 1.69678 1.35255 1.33861 1.19213 0.86140 0.84547 0.77256 0.78383 1.20564 1.21896 1.21929 1.22669 1.01561 1.00098 0.94800 1.22228 0.79767 1.00474 1.00282 1.48089 1.07475 1.57553 1.20200 1.17896 0.86212 0.78392 0.82645 1.90851 1.14774 1.54210 1.78533 1.19979 0.96089 0.96969 0.97392 1.21637 0.93301 0.99228 0.94777 1.20863 1.00739 0.96862 0.95693 1.21130 0.93542 0.95680 0.99291 1.18813 0.97574 0.98239 0.96636 1.21462 0.94280 0.93795 0.98877 1.21940 0.98079 1.01949 0.97638 1.23118 0.98196 0.90541 0.92082 1.68160 1.06256 1.09748 1.31382 1.18562 0.91947 0.94296 0.91310 0.90879 0.93987 0.91485 0.91765 0.90652 0.78259 0.93568 0.90703 0.92266 0.91412 0.89775 0.84054 0.84722 0.84923 0.84288 0.84438 0.82298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.59 37.15 0.28 -1.79 16 2 C 0.15 2.30 3.49 -67.60 -0.24 2.07 16 3 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 4 C -0.14 -2.36 4.84 -26.61 -0.13 -2.49 16 5 C 0.18 3.51 2.73 -67.89 -0.19 3.33 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 N -0.72 -18.06 5.12 -53.39 -0.27 -18.34 16 8 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 9 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 11 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 12 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 C -0.15 -2.61 5.66 -26.61 -0.15 -2.76 16 17 C 0.10 1.30 4.85 -3.71 -0.02 1.28 16 18 N -0.60 -9.00 2.97 -166.47 -0.49 -9.50 16 19 C 0.56 9.02 7.08 -12.52 -0.09 8.93 16 20 O -0.51 -9.37 11.52 5.27 0.06 -9.31 16 21 C -0.10 -1.40 5.23 -104.62 -0.55 -1.94 16 22 C -0.07 -0.72 7.33 -39.16 -0.29 -1.01 16 23 C -0.12 -1.01 9.93 -40.03 -0.40 -1.41 16 24 C -0.08 -0.64 9.75 -39.43 -0.38 -1.02 16 25 C -0.11 -1.18 5.74 -106.82 -0.61 -1.80 16 26 C -0.06 -0.48 9.90 -39.19 -0.39 -0.87 16 27 C -0.18 -1.43 10.03 -39.79 -0.40 -1.83 16 28 C 0.13 1.45 11.15 -17.44 -0.19 1.25 16 29 N -0.45 -6.69 9.11 -10.76 -0.10 -6.79 16 30 C 0.16 2.27 6.58 -84.58 -0.56 1.71 16 31 H 0.07 1.29 6.74 -51.93 -0.35 0.93 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.07 6.75 -51.93 -0.35 0.72 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.38 10.35 7.80 -40.82 -0.32 10.03 16 37 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 41 H 0.08 1.02 4.59 -51.93 -0.24 0.79 16 42 H 0.14 1.25 6.35 -52.49 -0.33 0.91 16 43 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 46 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -34.53 373.65 -10.64 -45.17 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.63 Total: 8.93 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -4.54 Total: -5.52 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -0.14 Total: -62.11 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.06 Total: -9.31 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.53 -10.64 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044663536.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.991 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds