Wall clock time and date at job start Sat Apr 11 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.69828 * 2 1 4 4 C 1.53194 * 109.58871 * 120.35053 * 2 1 3 5 5 C 1.53040 * 109.31658 * 174.42392 * 4 2 1 6 6 H 1.08998 * 109.44447 * 58.64626 * 5 4 2 7 7 N 1.46496 * 109.46100 * 178.61713 * 5 4 2 8 8 C 1.36942 * 119.99943 * 205.07264 * 7 5 4 9 9 H 1.07993 * 119.99811 * 359.72036 * 8 7 5 10 10 C 1.38810 * 119.99881 * 179.72764 * 8 7 5 11 11 N 1.31619 * 119.99969 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99970 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46961 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47474 * 119.99345 * 12 10 8 15 15 H 1.48498 * 109.47103 * 240.00066 * 12 10 8 16 16 C 1.53036 * 109.53829 * 298.63963 * 5 4 2 17 17 C 1.53196 * 109.31521 * 61.36192 * 16 5 4 18 18 N 1.46925 * 109.58867 * 239.64289 * 2 1 3 19 19 C 1.34767 * 120.63220 * 6.62627 * 18 2 1 20 20 O 1.21607 * 120.00050 * 355.19422 * 19 18 2 21 21 C 1.47438 * 120.00394 * 175.19939 * 19 18 2 22 22 C 1.38741 * 120.32740 * 321.07734 * 21 19 18 23 23 C 1.38868 * 120.72068 * 179.97438 * 22 21 19 24 24 C 1.36346 * 121.06220 * 0.02562 * 23 22 21 25 25 C 1.40442 * 120.08579 * 359.97438 * 24 23 22 26 26 C 1.40806 * 121.26895 * 180.02562 * 25 24 23 27 27 C 1.36642 * 118.14958 * 179.26082 * 26 25 24 28 28 C 1.39232 * 119.90908 * 0.71316 * 27 26 25 29 29 N 1.31231 * 121.69720 * 359.49748 * 28 27 26 30 30 C 1.33360 * 121.35009 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47048 * 176.05523 * 1 2 3 32 32 H 1.08998 * 109.47696 * 296.05675 * 1 2 3 33 33 H 1.09001 * 109.47194 * 56.05684 * 1 2 3 34 34 H 1.09000 * 109.49620 * 54.47167 * 4 2 1 35 35 H 1.09006 * 109.49737 * 294.37924 * 4 2 1 36 36 H 0.96999 * 119.99891 * 24.79284 * 7 5 4 37 37 H 0.97000 * 119.99683 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.50075 * 181.31788 * 16 5 4 39 39 H 1.09005 * 109.49661 * 301.41245 * 16 5 4 40 40 H 1.08998 * 109.58737 * 65.15080 * 17 16 5 41 41 H 1.09002 * 109.58804 * 185.43643 * 17 16 5 42 42 H 1.08001 * 119.64021 * 0.02562 * 22 21 19 43 43 H 1.08006 * 119.46660 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.96196 * 179.97438 * 24 23 22 45 45 H 1.07994 * 120.91823 * 359.95786 * 26 25 24 46 46 H 1.07995 * 120.03737 * 180.20509 * 27 26 25 47 47 H 1.08001 * 119.14970 * 179.48197 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8479 1.1703 6 1 4.0058 0.1476 1.0992 7 7 4.0651 -1.5156 2.3755 8 6 5.3492 -1.2973 2.7984 9 1 5.9964 -0.6365 2.2409 10 6 5.8189 -1.9256 3.9436 11 7 5.0300 -2.7307 4.6232 12 14 7.5707 -1.6285 4.5202 13 1 8.2460 -0.6900 3.5883 14 1 7.5502 -1.0428 5.8846 15 1 8.3087 -2.9169 4.5454 16 6 3.9570 -1.6656 -0.0633 17 6 3.4651 -0.9469 -1.3236 18 7 2.0225 -0.6996 -1.1944 19 6 1.1675 -1.1062 -2.1535 20 8 -0.0310 -0.9739 -1.9956 21 6 1.6851 -1.7117 -3.3942 22 6 2.8358 -1.2149 -3.9892 23 6 3.3308 -1.7792 -5.1574 24 6 2.7019 -2.8335 -5.7509 25 6 1.5341 -3.3675 -5.1821 26 6 0.8649 -4.4561 -5.7735 27 6 -0.2571 -4.9347 -5.1578 28 6 -0.7153 -4.3365 -3.9870 29 7 -0.0904 -3.3191 -3.4423 30 6 1.0151 -2.8109 -3.9882 31 1 -0.3633 -1.0252 -0.0707 32 1 -0.3634 0.4514 0.9232 33 1 -0.3633 0.5738 -0.8525 34 1 1.6030 -1.7252 1.2915 35 1 1.7659 -0.1667 2.1369 36 1 3.4838 -2.1091 2.8762 37 1 5.3582 -3.1694 5.4237 38 1 5.0412 -1.7695 -0.1035 39 1 3.4983 -2.6527 -0.0050 40 1 3.9903 0.0021 -1.4316 41 1 3.6542 -1.5706 -2.1973 42 1 3.3527 -0.3806 -3.5384 43 1 4.2280 -1.3761 -5.6036 44 1 3.1022 -3.2584 -6.6595 45 1 1.2347 -4.9074 -6.6823 46 1 -0.7923 -5.7707 -5.5832 47 1 -1.6081 -4.7194 -3.5152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044663536.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:17 Heat of formation + Delta-G solvation = 36.990981 kcal Electronic energy + Delta-G solvation = -29532.819501 eV Core-core repulsion = 25680.655778 eV Total energy + Delta-G solvation = -3852.163722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.18450 -41.07647 -38.65547 -38.01245 -36.15290 -34.82587 -33.79375 -33.53228 -31.53283 -31.27827 -30.63296 -28.42858 -26.14373 -25.59056 -24.76563 -24.61459 -23.97643 -22.63645 -21.54624 -20.30482 -19.33427 -19.12548 -18.11478 -17.87006 -17.14833 -16.84770 -16.70290 -16.41079 -15.74631 -15.56831 -15.43142 -15.27815 -15.13531 -15.01739 -14.69902 -14.50432 -14.16505 -13.95980 -13.74621 -13.45119 -13.40627 -13.10099 -12.98141 -12.88652 -12.82861 -12.62490 -12.50772 -12.24081 -12.10547 -12.03204 -11.96556 -11.69782 -11.47746 -11.35445 -10.90051 -10.50505 -9.97885 -9.76156 -9.57294 -9.22899 -9.00521 -7.92702 -5.22175 -0.76643 -0.16261 0.80376 1.48385 1.49244 1.59218 1.74100 1.90012 2.17912 2.57111 3.13442 3.31289 3.39722 3.41499 3.72270 3.77253 3.80558 3.87241 3.98707 4.02357 4.05481 4.07599 4.18605 4.24511 4.31595 4.44256 4.48613 4.55561 4.60906 4.68310 4.69467 4.74897 4.83769 4.93206 4.98318 5.00600 5.04236 5.10224 5.14171 5.22790 5.27118 5.38247 5.41070 5.49160 5.53981 5.57627 5.72161 5.85597 6.28313 6.44326 7.03219 7.25232 7.33954 8.08897 8.32851 9.31407 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.002885 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.212677 B = 9701.881029 C =10235.212345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.154 3.846 3 H 0.094 0.906 4 C -0.123 4.123 5 C 0.175 3.825 6 H 0.056 0.944 7 N -0.739 5.739 8 C -0.233 4.233 9 H 0.083 0.917 10 C -0.081 4.081 11 N -0.974 5.974 12 Si 0.973 3.027 13 H -0.260 1.260 14 H -0.297 1.297 15 H -0.297 1.297 16 C -0.139 4.139 17 C 0.105 3.895 18 N -0.602 5.602 19 C 0.557 3.443 20 O -0.544 6.544 21 C -0.147 4.147 22 C -0.057 4.057 23 C -0.128 4.128 24 C -0.061 4.061 25 C -0.130 4.130 26 C -0.050 4.050 27 C -0.177 4.177 28 C 0.119 3.881 29 N -0.511 5.511 30 C 0.130 3.870 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.368 0.632 37 H 0.249 0.751 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.157 0.843 43 H 0.174 0.826 44 H 0.175 0.825 45 H 0.182 0.818 46 H 0.174 0.826 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.434 0.300 -28.327 28.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 H 0.112 0.888 4 C -0.162 4.162 5 C 0.067 3.933 6 H 0.074 0.926 7 N -0.378 5.378 8 C -0.364 4.364 9 H 0.101 0.899 10 C -0.273 4.273 11 N -0.625 5.625 12 Si 0.802 3.198 13 H -0.184 1.184 14 H -0.224 1.224 15 H -0.224 1.224 16 C -0.180 4.180 17 C -0.017 4.017 18 N -0.335 5.335 19 C 0.346 3.654 20 O -0.423 6.423 21 C -0.151 4.151 22 C -0.077 4.077 23 C -0.145 4.145 24 C -0.080 4.080 25 C -0.132 4.132 26 C -0.075 4.075 27 C -0.197 4.197 28 C -0.052 4.052 29 N -0.219 5.219 30 C 0.008 3.992 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.199 0.801 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.174 0.826 43 H 0.191 0.809 44 H 0.192 0.808 45 H 0.199 0.801 46 H 0.191 0.809 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.131 0.937 -27.429 28.122 hybrid contribution 0.577 -0.912 0.811 1.350 sum -5.555 0.025 -26.618 27.192 Atomic orbital electron populations 1.22008 0.93027 1.02055 1.00643 1.21268 0.95225 0.95533 0.82887 0.88838 1.22156 0.96133 1.00060 0.97899 1.20398 0.91954 0.94928 0.85998 0.92579 1.42697 1.12218 1.54652 1.28221 1.19701 0.89935 1.21100 1.05700 0.89942 1.25599 1.02191 1.00563 0.98918 1.69852 1.37220 1.35676 1.19787 0.85068 0.79926 0.77047 0.77718 1.18424 1.22430 1.22406 1.22456 1.01067 0.98779 0.95740 1.22280 0.78965 1.01850 0.98630 1.48145 1.08035 1.57460 1.19865 1.18379 0.85857 0.77620 0.83514 1.90813 1.16327 1.55545 1.79622 1.19932 0.98623 0.98965 0.97567 1.21918 0.91696 0.98891 0.95177 1.21295 1.01809 0.96686 0.94741 1.21654 0.91817 0.94690 0.99828 1.19180 0.98861 0.99227 0.95936 1.21996 0.93454 0.92455 0.99611 1.22271 0.98411 1.02534 0.96460 1.23550 0.98435 0.89979 0.93275 1.68079 1.08052 1.12028 1.33732 1.18898 0.92295 0.95059 0.92956 0.93777 0.92683 0.91912 0.94142 0.90939 0.80077 0.94239 0.91075 0.94964 0.88277 0.87904 0.82568 0.80907 0.80807 0.80061 0.80857 0.81259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 7.59 71.98 0.55 -3.33 16 2 C 0.15 4.74 3.49 44.97 0.16 4.90 16 3 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 4 C -0.12 -4.45 4.84 30.67 0.15 -4.30 16 5 C 0.18 6.89 2.73 45.02 0.12 7.01 16 6 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 7 N -0.74 -37.68 5.12 -322.83 -1.65 -39.33 16 8 C -0.23 -12.73 9.93 84.03 0.83 -11.90 16 9 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 10 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 11 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 12 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 13 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 14 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 15 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 16 C -0.14 -4.84 5.66 30.67 0.17 -4.66 16 17 C 0.11 2.70 4.85 86.36 0.42 3.11 16 18 N -0.60 -18.09 2.97 -798.85 -2.37 -20.46 16 19 C 0.56 18.53 7.08 86.67 0.61 19.15 16 20 O -0.54 -21.46 11.52 -4.05 -0.05 -21.51 16 21 C -0.15 -4.10 5.23 -19.86 -0.10 -4.20 16 22 C -0.06 -1.05 7.33 22.54 0.17 -0.89 16 23 C -0.13 -1.57 9.93 21.98 0.22 -1.35 16 24 C -0.06 -0.75 9.75 22.37 0.22 -0.54 16 25 C -0.13 -2.51 5.74 -21.29 -0.12 -2.63 16 26 C -0.05 -0.66 9.90 22.52 0.22 -0.44 16 27 C -0.18 -2.56 10.03 22.14 0.22 -2.34 16 28 C 0.12 2.67 11.15 85.02 0.95 3.62 16 29 N -0.51 -16.16 9.11 -187.96 -1.71 -17.88 16 30 C 0.13 3.70 6.58 40.61 0.27 3.97 16 31 H 0.04 1.67 6.74 -2.39 -0.02 1.65 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 2.08 6.75 -2.39 -0.02 2.06 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 2.62 8.14 -2.38 -0.02 2.61 16 36 H 0.37 20.77 7.80 -92.71 -0.72 20.04 16 37 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.10 1.98 8.11 -2.39 -0.02 1.97 16 41 H 0.10 2.31 4.59 -2.39 -0.01 2.30 16 42 H 0.16 2.27 6.35 -2.91 -0.02 2.25 16 43 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 44 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 45 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 46 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 47 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -81.21 373.65 2.31 -78.90 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.27 Total: 31.71 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 5.52 Total: 1.01 kcal Atomic # 7 Polarization: -132.60 SS G_CDS: -5.46 Total: -138.06 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -81.21 2.31 -78.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044663536.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.892 kcal (2) G-P(sol) polarization free energy of solvation -81.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds