Wall clock time and date at job start Sat Apr 11 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.70355 * 2 1 4 4 C 1.53194 * 109.58570 * 120.35863 * 2 1 3 5 5 C 1.53041 * 109.31172 * 174.41667 * 4 2 1 6 6 H 1.09000 * 109.45787 * 58.65660 * 5 4 2 7 7 N 1.46503 * 109.45714 * 178.61694 * 5 4 2 8 8 C 1.36940 * 119.99478 * 205.00564 * 7 5 4 9 9 H 1.07993 * 120.00285 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99848 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00035 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00366 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46889 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47730 * 119.99609 * 12 10 8 15 15 H 1.48499 * 109.47185 * 239.99986 * 12 10 8 16 16 C 1.53035 * 109.53785 * 298.63647 * 5 4 2 17 17 C 1.52762 * 109.38602 * 61.24429 * 16 5 4 18 18 N 1.46924 * 109.58459 * 239.64461 * 2 1 3 19 19 C 1.34785 * 120.62927 * 6.58787 * 18 2 1 20 20 O 1.21585 * 120.00281 * 5.04934 * 19 18 2 21 21 C 1.47549 * 119.99627 * 185.05427 * 19 18 2 22 22 C 1.38698 * 120.38768 * 304.86141 * 21 19 18 23 23 C 1.38967 * 120.53651 * 180.02562 * 22 21 19 24 24 C 1.36204 * 121.24110 * 0.02562 * 23 22 21 25 25 C 1.40714 * 120.19932 * 359.97438 * 24 23 22 26 26 N 1.33684 * 120.93808 * 179.70084 * 25 24 23 27 27 C 1.31066 * 121.34194 * 179.71399 * 26 25 24 28 28 C 1.39344 * 121.70295 * 0.57602 * 27 26 25 29 29 C 1.36678 * 119.86812 * 359.71778 * 28 27 26 30 30 C 1.40474 * 118.17019 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47706 * 173.07909 * 1 2 3 32 32 H 1.09007 * 109.47105 * 293.07964 * 1 2 3 33 33 H 1.09005 * 109.47280 * 53.07429 * 1 2 3 34 34 H 1.08997 * 109.49787 * 294.37474 * 4 2 1 35 35 H 1.09004 * 109.49697 * 54.43663 * 4 2 1 36 36 H 0.96995 * 120.00296 * 25.00236 * 7 5 4 37 37 H 0.96998 * 120.00396 * 180.02562 * 11 10 8 38 38 H 1.09005 * 109.49490 * 181.31521 * 16 5 4 39 39 H 1.08997 * 109.50072 * 301.41255 * 16 5 4 40 40 H 1.08993 * 109.51089 * 185.70571 * 17 16 5 41 41 H 1.08993 * 109.43215 * 65.41497 * 17 16 5 42 42 H 1.08004 * 119.73154 * 0.02562 * 22 21 19 43 43 H 1.08005 * 119.37693 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.90311 * 180.02562 * 24 23 22 45 45 H 1.08000 * 119.15156 * 180.29253 * 27 26 25 46 46 H 1.08002 * 120.06549 * 179.69034 * 28 27 26 47 47 H 1.08002 * 120.91272 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 1.2454 5 6 3.5675 -0.8482 1.1700 6 1 4.0062 0.1471 1.0992 7 7 4.0651 -1.5161 2.3753 8 6 5.3497 -1.2991 2.7973 9 1 5.9959 -0.6359 2.2415 10 6 5.8214 -1.9323 3.9389 11 7 5.0340 -2.7409 4.6161 12 14 7.5738 -1.6369 4.5144 13 1 8.2473 -0.6937 3.5859 14 1 7.5550 -1.0575 5.8815 15 1 8.3125 -2.9250 4.5327 16 6 3.9568 -1.6658 -0.0636 17 6 3.4644 -0.9519 -1.3212 18 7 2.0225 -0.6995 -1.1945 19 6 1.1672 -1.1068 -2.1532 20 8 -0.0112 -0.8166 -2.0800 21 6 1.6610 -1.9050 -3.2917 22 6 2.7010 -1.4346 -4.0797 23 6 3.1681 -2.1835 -5.1530 24 6 2.6225 -3.3928 -5.4614 25 6 1.5655 -3.9099 -4.6896 26 7 1.0151 -5.0924 -4.9826 27 6 0.0341 -5.5840 -4.2658 28 6 -0.4908 -4.8963 -3.1735 29 6 0.0236 -3.6791 -2.8243 30 6 1.0792 -3.1603 -3.5924 31 1 -0.3634 -1.0201 -0.1238 32 1 -0.3634 0.4029 0.9455 33 1 -0.3634 0.6174 -0.8216 34 1 1.7660 -0.1670 2.1368 35 1 1.6025 -1.7252 1.2916 36 1 3.4848 -2.1119 2.8743 37 1 5.3634 -3.1831 5.4140 38 1 5.0411 -1.7698 -0.1038 39 1 3.4981 -2.6529 -0.0054 40 1 3.6502 -1.5797 -2.1925 41 1 3.9928 -0.0050 -1.4310 42 1 3.1513 -0.4784 -3.8574 43 1 3.9792 -1.7994 -5.7540 44 1 3.0027 -3.9570 -6.3002 45 1 -0.3812 -6.5450 -4.5314 46 1 -1.3028 -5.3241 -2.6042 47 1 -0.3706 -3.1314 -1.9811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044698698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:21 Heat of formation + Delta-G solvation = 50.220009 kcal Electronic energy + Delta-G solvation = -29653.656973 eV Core-core repulsion = 25802.066904 eV Total energy + Delta-G solvation = -3851.590068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39919 -40.13782 -37.56204 -37.16314 -34.57689 -33.84654 -32.67227 -31.99122 -30.84359 -30.23507 -29.23048 -27.11956 -24.97120 -24.32916 -23.90325 -23.52721 -22.85886 -21.51477 -20.19288 -19.27533 -18.44886 -17.33436 -17.21630 -17.09667 -16.33174 -15.97116 -15.26067 -14.99557 -14.85892 -14.54778 -14.46800 -14.07956 -13.92272 -13.74317 -13.50858 -13.38337 -13.24924 -12.93193 -12.66799 -12.34297 -12.26252 -12.04436 -11.84452 -11.68475 -11.59442 -11.35739 -10.95931 -10.87299 -10.82815 -10.75218 -10.49268 -10.25299 -9.96170 -9.84690 -9.74340 -9.10317 -9.05539 -8.95045 -8.54996 -8.42166 -7.02362 -5.81852 -3.11324 -0.00086 0.56655 1.59932 2.45759 2.67775 3.01629 3.39271 3.44773 3.47238 3.86464 4.02289 4.20657 4.49243 4.52959 4.53417 4.61141 4.74947 4.87002 4.98239 5.04532 5.09664 5.16629 5.24017 5.30991 5.42415 5.50665 5.52725 5.57143 5.60230 5.71052 5.75279 5.81755 5.85040 5.94354 6.02042 6.06724 6.07800 6.20536 6.23743 6.31868 6.38338 6.41297 6.48512 6.51991 6.66786 6.83789 6.98920 7.40292 7.64685 7.64976 8.09332 8.36173 9.47625 10.04614 10.39252 11.40694 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.003040 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.181383 B = 9209.360689 C = 9689.348919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.147 3.853 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.292 1.292 16 C -0.151 4.151 17 C 0.097 3.903 18 N -0.591 5.591 19 C 0.559 3.441 20 O -0.531 6.531 21 C -0.097 4.097 22 C -0.084 4.084 23 C -0.105 4.105 24 C -0.077 4.077 25 C 0.124 3.876 26 N -0.476 5.476 27 C 0.133 3.867 28 C -0.174 4.174 29 C -0.047 4.047 30 C -0.069 4.069 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.161 0.839 46 H 0.140 0.860 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 0.566 -19.748 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.089 0.911 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.192 4.192 17 C -0.026 4.026 18 N -0.323 5.323 19 C 0.347 3.653 20 O -0.409 6.409 21 C -0.101 4.101 22 C -0.103 4.103 23 C -0.125 4.125 24 C -0.095 4.095 25 C 0.002 3.998 26 N -0.184 5.184 27 C -0.039 4.039 28 C -0.194 4.194 29 C -0.073 4.073 30 C -0.072 4.072 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.178 0.822 46 H 0.158 0.842 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.864 0.406 -20.375 22.224 hybrid contribution 0.637 0.209 1.349 1.507 sum -8.227 0.616 -19.026 20.738 Atomic orbital electron populations 1.22190 0.92819 1.03485 1.00828 1.21370 0.95444 0.95234 0.83554 0.90803 1.22305 0.97659 1.00946 0.96477 1.20165 0.90840 0.94996 0.87133 0.93381 1.42431 1.12937 1.54370 1.26646 1.19269 0.89061 1.22265 1.06544 0.91104 1.24749 0.98159 0.99777 0.98178 1.69671 1.35319 1.33518 1.19457 0.86141 0.84485 0.77304 0.78393 1.20535 1.21856 1.21874 1.22600 1.01826 1.00057 0.94724 1.22048 0.79224 1.00877 1.00436 1.48200 1.07834 1.56430 1.19871 1.18157 0.85823 0.79313 0.82027 1.90847 1.16469 1.56919 1.76686 1.20002 0.97512 0.94894 0.97658 1.21407 0.94205 1.00174 0.94502 1.20829 1.00138 0.94434 0.97070 1.20940 0.94143 0.95550 0.98911 1.18804 0.96290 0.91108 0.93549 1.68049 1.09978 1.11327 1.28999 1.22992 0.91295 0.99070 0.90569 1.21967 1.02156 0.96015 0.99266 1.21632 0.92872 0.94845 0.97946 1.18538 0.97320 0.94464 0.96854 0.91805 0.93510 0.90833 0.90432 0.91821 0.78265 0.93522 0.90494 0.92284 0.89791 0.91145 0.84644 0.84491 0.84354 0.82197 0.84238 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.61 37.16 0.28 -1.56 16 2 C 0.15 2.03 3.50 -67.60 -0.24 1.79 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.13 -2.17 4.84 -26.61 -0.13 -2.29 16 5 C 0.18 3.32 2.73 -67.89 -0.19 3.14 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 N -0.72 -17.44 5.12 -53.39 -0.27 -17.72 16 8 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 12 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 C -0.15 -2.48 5.64 -26.84 -0.15 -2.63 16 17 C 0.10 1.23 5.54 -3.93 -0.02 1.21 16 18 N -0.59 -7.97 2.98 -166.70 -0.50 -8.47 16 19 C 0.56 7.82 6.27 -12.46 -0.08 7.74 16 20 O -0.53 -8.36 11.36 5.29 0.06 -8.30 16 21 C -0.10 -1.22 4.90 -104.66 -0.51 -1.73 16 22 C -0.08 -0.84 7.42 -39.14 -0.29 -1.13 16 23 C -0.10 -0.91 9.92 -40.04 -0.40 -1.30 16 24 C -0.08 -0.78 9.96 -39.38 -0.39 -1.17 16 25 C 0.12 1.55 6.60 -84.88 -0.56 0.99 16 26 N -0.48 -5.83 10.34 -10.99 -0.11 -5.94 16 27 C 0.13 1.33 11.15 -17.47 -0.19 1.14 16 28 C -0.17 -1.75 10.03 -39.73 -0.40 -2.15 16 29 C -0.05 -0.58 9.30 -39.30 -0.37 -0.95 16 30 C -0.07 -0.91 5.76 -106.53 -0.61 -1.52 16 31 H 0.06 0.94 6.82 -51.93 -0.35 0.59 16 32 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 33 H 0.07 1.04 6.67 -51.93 -0.35 0.70 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.96 4.74 -51.93 -0.25 0.72 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.14 1.11 7.40 -52.48 -0.39 0.72 16 43 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 45 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 46 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.14 1.85 6.53 -52.49 -0.34 1.51 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -32.13 373.74 -10.59 -42.72 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.61 Total: 9.62 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -4.49 Total: -7.47 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.16 Total: -59.08 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.06 Total: -8.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.13 -10.59 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044698698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.942 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds