Wall clock time and date at job start Sat Apr 11 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.70301 * 2 1 4 4 C 1.52766 * 109.51069 * 239.88795 * 2 1 3 5 5 C 1.53045 * 109.38613 * 185.70529 * 4 2 1 6 6 H 1.09001 * 109.45049 * 181.25070 * 5 4 2 7 7 N 1.46501 * 109.45796 * 301.22168 * 5 4 2 8 8 C 1.36935 * 119.99568 * 205.06512 * 7 5 4 9 9 H 1.07997 * 120.00496 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99754 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00224 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00126 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47027 * 89.99919 * 12 10 8 14 14 H 1.48505 * 109.47451 * 210.00145 * 12 10 8 15 15 H 1.48499 * 109.47209 * 329.99705 * 12 10 8 16 16 C 1.53045 * 109.53384 * 61.23679 * 5 4 2 17 17 C 1.53192 * 109.31456 * 298.63662 * 16 5 4 18 18 N 1.46920 * 108.77506 * 54.63684 * 17 16 5 19 19 C 1.34784 * 120.63012 * 126.36663 * 18 17 16 20 20 O 1.21500 * 119.99898 * 187.77036 * 19 18 17 21 21 C 1.48269 * 119.99802 * 7.77611 * 19 18 17 22 22 C 1.40277 * 119.24002 * 190.93939 * 21 19 18 23 23 C 1.36506 * 119.82070 * 179.97438 * 22 21 19 24 24 C 1.40760 * 118.23751 * 0.02562 * 23 22 21 25 25 C 1.40424 * 121.27185 * 180.02562 * 24 23 22 26 26 C 1.36133 * 119.64840 * 179.76027 * 25 24 23 27 27 C 1.39436 * 120.91174 * 0.47633 * 26 25 24 28 28 C 1.35994 * 121.08630 * 359.49576 * 27 26 25 29 29 C 1.40824 * 119.73822 * 0.25905 * 28 27 26 30 30 N 1.31881 * 119.24157 * 10.91692 * 21 19 18 31 31 H 1.08988 * 109.47073 * 302.82160 * 1 2 3 32 32 H 1.08998 * 109.46987 * 62.82430 * 1 2 3 33 33 H 1.09000 * 109.46956 * 182.81915 * 1 2 3 34 34 H 1.09002 * 109.56730 * 65.66980 * 4 2 1 35 35 H 1.09003 * 109.38573 * 305.63435 * 4 2 1 36 36 H 0.97002 * 119.99932 * 25.06432 * 7 5 4 37 37 H 0.96995 * 120.00442 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.49119 * 178.68351 * 16 5 4 39 39 H 1.09004 * 109.52065 * 58.60957 * 16 5 4 40 40 H 1.08999 * 109.58640 * 294.84758 * 17 16 5 41 41 H 1.09001 * 109.69967 * 174.49449 * 17 16 5 42 42 H 1.08005 * 120.09315 * 0.02610 * 22 21 19 43 43 H 1.07995 * 120.88111 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.17727 * 359.95255 * 25 24 23 45 45 H 1.08000 * 119.54262 * 180.24698 * 26 25 24 46 46 H 1.08001 * 119.45367 * 179.77281 * 27 26 25 47 47 H 1.07999 * 120.12894 * 180.23417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5639 -0.8461 -1.1728 6 1 3.9312 -1.3416 -2.0715 7 7 4.1578 0.4895 -1.0745 8 6 5.4417 0.7009 -1.5009 9 1 6.0164 -0.1168 -1.9101 10 6 6.0043 1.9665 -1.4082 11 7 7.2383 2.1699 -1.8185 12 14 5.0101 3.3811 -0.7012 13 1 5.2229 3.4505 0.7669 14 1 5.4485 4.6551 -1.3257 15 1 3.5686 3.1623 -0.9827 16 6 3.9523 -1.6686 0.0580 17 6 3.4644 -0.9520 1.3210 18 7 2.0226 -0.6996 1.1944 19 6 1.1673 -1.1072 2.1531 20 8 -0.0314 -1.0206 1.9746 21 6 1.6893 -1.6611 3.4255 22 6 0.8041 -2.2907 4.3130 23 6 1.2720 -2.8053 5.4876 24 6 2.6459 -2.6823 5.7681 25 6 3.1953 -3.1890 6.9569 26 6 4.5296 -3.0562 7.1924 27 6 5.3587 -2.4144 6.2732 28 6 4.8623 -1.9117 5.1112 29 6 3.4881 -2.0333 4.8281 30 7 2.9753 -1.5509 3.6966 31 1 -0.3633 0.5570 0.8635 32 1 -0.3633 0.4694 -0.9142 33 1 -0.3633 -1.0264 0.0505 34 1 1.7632 -0.1564 -2.1350 35 1 1.5963 -1.7168 -1.2944 36 1 3.6414 1.2241 -0.7073 37 1 7.6316 3.0542 -1.7534 38 1 5.0363 -1.7761 0.0963 39 1 3.4909 -2.6544 -0.0023 40 1 3.9929 -0.0050 1.4310 41 1 3.6506 -1.5779 2.1937 42 1 -0.2447 -2.3689 4.0674 43 1 0.6057 -3.2932 6.1835 44 1 2.5633 -3.6843 7.6792 45 1 4.9510 -3.4500 8.1054 46 1 6.4133 -2.3188 6.4856 47 1 5.5192 -1.4207 4.4085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044831760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:47 Heat of formation + Delta-G solvation = 72.644233 kcal Electronic energy + Delta-G solvation = -29970.346139 eV Core-core repulsion = 26119.728458 eV Total energy + Delta-G solvation = -3850.617681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.38834 -40.09194 -37.75939 -37.05189 -34.47873 -33.83277 -32.56173 -31.90938 -30.75930 -30.24553 -29.57052 -27.18709 -25.38074 -24.17166 -23.89692 -23.04764 -22.47430 -21.91515 -20.44968 -18.79371 -18.21037 -17.72676 -17.58632 -16.87384 -15.82116 -15.65699 -15.51944 -14.90645 -14.80285 -14.60513 -14.38724 -14.10856 -13.86550 -13.66786 -13.64664 -13.33016 -13.27375 -12.99133 -12.44788 -12.23729 -12.14420 -12.09956 -11.88464 -11.76506 -11.55094 -11.27202 -11.01929 -10.88197 -10.85686 -10.65059 -10.56884 -10.19717 -9.97721 -9.56485 -9.48424 -9.06004 -8.98316 -8.75318 -8.50589 -8.20275 -7.24395 -5.76092 -3.10869 -0.04622 0.42780 1.66663 2.27147 3.04580 3.13948 3.37508 3.40859 3.46008 3.81938 3.92503 4.26198 4.43221 4.52232 4.57111 4.59761 4.80103 4.86602 5.05085 5.13541 5.17770 5.23027 5.35660 5.41643 5.48093 5.59284 5.63010 5.67121 5.74371 5.78078 5.79178 5.88848 5.94444 6.04428 6.10344 6.12362 6.17047 6.21092 6.37874 6.41778 6.48320 6.49571 6.63608 6.71622 6.75408 6.85338 7.06326 7.44193 7.66962 8.00818 8.26153 8.43205 9.21785 9.94705 10.14881 11.42443 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.003955 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.866167 B = 7077.734406 C = 8661.136072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.140 3.860 3 H 0.073 0.927 4 C -0.136 4.136 5 C 0.178 3.822 6 H 0.058 0.942 7 N -0.746 5.746 8 C -0.239 4.239 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.934 5.934 12 Si 0.878 3.122 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.150 4.150 17 C 0.081 3.919 18 N -0.574 5.574 19 C 0.562 3.438 20 O -0.536 6.536 21 C 0.120 3.880 22 C -0.124 4.124 23 C -0.064 4.064 24 C -0.089 4.089 25 C -0.104 4.104 26 C -0.108 4.108 27 C -0.105 4.105 28 C -0.082 4.082 29 C 0.117 3.883 30 N -0.426 5.426 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.134 0.866 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.133 0.867 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 -12.794 17.907 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.038 3.962 3 H 0.091 0.909 4 C -0.175 4.175 5 C 0.068 3.932 6 H 0.076 0.924 7 N -0.390 5.390 8 C -0.369 4.369 9 H 0.108 0.892 10 C -0.189 4.189 11 N -0.582 5.582 12 Si 0.709 3.291 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.191 4.191 17 C -0.040 4.040 18 N -0.304 5.304 19 C 0.348 3.652 20 O -0.414 6.414 21 C -0.033 4.033 22 C -0.145 4.145 23 C -0.090 4.090 24 C -0.091 4.091 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.125 4.125 28 C -0.101 4.101 29 C -0.005 4.005 30 N -0.138 5.138 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.150 0.850 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.573 -12.331 17.118 23.598 hybrid contribution -0.875 0.807 1.025 1.571 sum -11.448 -11.524 18.143 24.352 Atomic orbital electron populations 1.22227 0.92912 1.03515 1.00594 1.21255 0.95190 0.95596 0.84184 0.90901 1.22208 0.97546 1.00667 0.97049 1.20186 0.90021 0.87166 0.95780 0.92413 1.42856 1.14261 1.05383 1.76467 1.19074 0.88063 0.95994 1.33777 0.89162 1.24623 0.96036 0.97025 1.01252 1.69691 1.13407 1.22095 1.53054 0.86652 0.79853 0.83451 0.79183 1.21102 1.21741 1.20438 1.22518 1.01746 0.97836 0.96958 1.22915 0.77509 1.03024 1.00578 1.48106 1.08812 1.54463 1.19035 1.17971 0.85859 0.78695 0.82634 1.90813 1.14880 1.56381 1.79312 1.21627 0.89372 0.96524 0.95791 1.21707 1.01820 0.97198 0.93760 1.21450 0.94004 0.96979 0.96540 1.18971 0.94405 0.99589 0.96109 1.20982 0.95758 0.99734 0.95816 1.21012 0.93692 0.98322 0.99528 1.20967 1.00578 0.97313 0.93669 1.21007 0.92770 0.98674 0.97599 1.19088 0.94662 0.96635 0.90157 1.68138 1.12546 1.16674 1.16403 0.91444 0.93849 0.90982 0.90586 0.91583 0.80667 0.93125 0.90469 0.93412 0.90701 0.84994 0.83265 0.83788 0.85151 0.85410 0.84957 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.58 37.16 0.28 -1.78 16 2 C 0.14 2.34 3.18 -67.82 -0.22 2.13 16 3 H 0.07 1.34 6.64 -51.93 -0.34 0.99 16 4 C -0.14 -2.22 5.05 -26.83 -0.14 -2.35 16 5 C 0.18 3.38 3.10 -67.88 -0.21 3.17 16 6 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 7 N -0.75 -17.18 4.11 -53.38 -0.22 -17.40 16 8 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 9 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 10 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 12 Si 0.88 22.21 27.74 -169.99 -4.71 17.49 16 13 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 15 H -0.28 -6.67 6.52 56.52 0.37 -6.31 16 16 C -0.15 -2.60 5.78 -26.61 -0.15 -2.75 16 17 C 0.08 1.39 5.60 -3.71 -0.02 1.37 16 18 N -0.57 -9.55 2.98 -166.42 -0.50 -10.04 16 19 C 0.56 9.03 7.57 -12.13 -0.09 8.93 16 20 O -0.54 -9.02 11.75 5.37 0.06 -8.96 16 21 C 0.12 1.70 6.57 -82.96 -0.54 1.15 16 22 C -0.12 -1.41 9.53 -39.44 -0.38 -1.78 16 23 C -0.06 -0.59 9.88 -39.25 -0.39 -0.98 16 24 C -0.09 -0.92 5.75 -106.71 -0.61 -1.53 16 25 C -0.10 -0.81 9.77 -39.52 -0.39 -1.20 16 26 C -0.11 -0.78 9.96 -39.89 -0.40 -1.18 16 27 C -0.11 -0.88 9.94 -39.94 -0.40 -1.28 16 28 C -0.08 -0.89 9.99 -39.41 -0.39 -1.29 16 29 C 0.12 1.46 6.61 -84.85 -0.56 0.90 16 30 N -0.43 -6.08 6.09 -7.54 -0.05 -6.13 16 31 H 0.07 1.09 6.76 -51.94 -0.35 0.74 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.13 6.74 -51.93 -0.35 0.78 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.36 8.33 3.93 -40.82 -0.16 8.17 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.47 7.74 -51.93 -0.40 1.07 16 41 H 0.13 2.12 4.07 -82.96 -0.34 1.78 16 42 H 0.15 1.52 7.64 -52.48 -0.40 1.12 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 47 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -32.41 368.10 -10.53 -42.95 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.59 Total: 9.97 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -4.86 Total: -5.12 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.01 Total: -61.88 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.06 Total: -8.96 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.41 -10.53 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.590 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds