Wall clock time and date at job start Sat Apr 11 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.77889 * 2 1 4 4 C 1.54319 * 110.71847 * 236.75128 * 2 1 3 5 5 N 1.47028 * 107.26947 * 219.44394 * 4 2 1 6 6 C 1.36932 * 125.64498 * 178.99120 * 5 4 2 7 7 H 1.08005 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99874 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99797 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47554 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47364 * 120.00094 * 10 8 6 13 13 H 1.48507 * 109.46958 * 239.99680 * 10 8 6 14 14 C 1.47419 * 108.70371 * 358.94679 * 5 4 2 15 15 C 1.54912 * 104.83391 * 24.12534 * 14 5 4 16 16 H 1.08995 * 111.03512 * 81.08074 * 15 14 5 17 17 N 1.46498 * 111.00363 * 204.91815 * 15 14 5 18 18 C 1.34777 * 119.99828 * 266.91713 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.50701 * 109.47355 * 180.02562 * 20 18 17 22 22 C 1.39369 * 119.48542 * 90.00239 * 21 20 18 23 23 C 1.36177 * 121.08342 * 179.97438 * 22 21 20 24 24 C 1.40372 * 119.51310 * 0.02562 * 23 22 21 25 25 C 1.40439 * 122.07259 * 180.02562 * 24 23 22 26 26 N 1.31247 * 119.87764 * 179.97438 * 25 24 23 27 27 C 1.32606 * 122.77482 * 359.97438 * 26 25 24 28 28 C 1.36173 * 121.88253 * 0.02562 * 27 26 25 29 29 C 1.40697 * 118.66801 * 359.97438 * 28 27 26 30 30 C 1.36215 * 119.48948 * 269.72536 * 21 20 18 31 31 H 1.09003 * 109.47263 * 296.77022 * 1 2 3 32 32 H 1.09000 * 109.46908 * 56.76956 * 1 2 3 33 33 H 1.09003 * 109.47343 * 176.76659 * 1 2 3 34 34 H 1.08999 * 109.88838 * 338.86726 * 4 2 1 35 35 H 1.09003 * 109.87868 * 100.03224 * 4 2 1 36 36 H 0.97002 * 120.00075 * 180.02562 * 9 8 6 37 37 H 1.09002 * 110.36625 * 265.29189 * 14 5 4 38 38 H 1.08996 * 110.36984 * 142.96546 * 14 5 4 39 39 H 0.97001 * 120.00384 * 87.20160 * 17 15 14 40 40 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 41 41 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 42 42 H 1.07999 * 119.46217 * 359.97438 * 22 21 20 43 43 H 1.08002 * 120.24121 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.06055 * 359.95040 * 25 24 23 45 45 H 1.07999 * 119.06003 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.66952 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.26078 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7914 -1.2071 5 7 3.2445 -1.5509 -0.7387 6 6 4.0044 -2.3970 -1.5014 7 1 3.7618 -2.5503 -2.5426 8 6 5.0866 -3.0578 -0.9363 9 7 5.3825 -2.8706 0.3324 10 14 6.1236 -4.2114 -1.9770 11 1 5.5865 -4.2474 -3.3610 12 1 7.5275 -3.7279 -2.0027 13 1 6.0810 -5.5768 -1.3943 14 6 3.4632 -1.2498 0.6878 15 6 2.0789 -0.7954 1.2140 16 1 1.4447 -1.6530 1.4381 17 7 2.2214 0.0698 2.3875 18 6 2.1816 -0.4617 3.6254 19 8 2.0328 -1.6570 3.7677 20 6 2.3219 0.4290 4.8329 21 6 2.2444 -0.4061 6.0850 22 6 3.4124 -0.9387 6.6276 23 6 3.3801 -1.6974 7.7580 24 6 2.1509 -1.9483 8.3876 25 6 2.0554 -2.7226 9.5554 26 7 0.8834 -2.9294 10.1087 27 6 -0.2422 -2.4342 9.6125 28 6 -0.2566 -1.6712 8.4847 29 6 0.9622 -1.4053 7.8341 30 6 1.0346 -0.6239 6.6719 31 1 -0.3634 0.4629 0.9175 32 1 -0.3633 0.5632 -0.8596 33 1 -0.3634 -1.0260 -0.0580 34 1 1.3130 -1.4760 -1.5774 35 1 2.3741 -0.1026 -1.9976 36 1 6.1389 -3.3320 0.7272 37 1 4.1930 -0.4478 0.7986 38 1 3.7959 -2.1425 1.2173 39 1 2.3403 1.0258 2.2739 40 1 3.2835 0.9410 4.7969 41 1 1.5182 1.1654 4.8365 42 1 4.3586 -0.7467 6.1438 43 1 4.2937 -2.1031 8.1671 44 1 2.9447 -3.1473 9.9970 45 1 -1.1742 -2.6426 10.1168 46 1 -1.1848 -1.2774 8.0979 47 1 0.1378 -0.2018 6.2431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080116607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:14 Heat of formation + Delta-G solvation = 39.748171 kcal Electronic energy + Delta-G solvation = -28483.807205 eV Core-core repulsion = 24631.763044 eV Total energy + Delta-G solvation = -3852.044161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -40.96866 -39.61036 -37.95710 -37.13777 -33.91535 -33.22728 -32.80411 -32.49024 -30.37940 -29.92086 -28.73050 -27.19158 -25.63619 -24.14223 -23.73548 -22.90060 -22.32298 -20.62474 -20.10783 -19.50908 -17.92728 -17.26668 -16.95995 -16.78542 -16.67818 -15.80152 -15.16657 -15.00163 -14.81205 -14.44414 -14.35207 -13.85280 -13.80744 -13.69698 -13.55575 -13.04827 -12.91178 -12.78585 -12.54261 -12.39425 -12.03594 -11.93338 -11.84881 -11.71870 -11.24503 -11.16712 -11.09691 -10.81257 -10.65390 -10.35866 -10.32785 -9.98268 -9.80233 -9.78594 -9.64783 -9.56265 -8.97866 -8.66366 -8.46072 -8.17685 -6.84825 -5.64432 -3.07916 0.24554 0.77858 1.81993 2.86752 2.94511 3.40121 3.45184 3.48253 3.55022 3.99238 4.24930 4.36253 4.45941 4.49093 4.68860 4.73473 4.87680 4.96933 5.03916 5.14021 5.20871 5.25337 5.29142 5.35733 5.42063 5.46381 5.52412 5.58572 5.67585 5.73674 5.93018 5.94196 5.95255 6.02174 6.13126 6.22012 6.24389 6.35649 6.39297 6.46459 6.50026 6.64597 6.72238 6.78771 6.93730 7.43969 7.61819 7.82372 7.82455 7.91915 8.36542 8.58032 9.20779 9.82061 10.45108 11.38492 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.002595 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.007924 B =10786.147846 C =12096.743316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.141 3.859 5 N -0.604 5.604 6 C -0.225 4.225 7 H 0.079 0.921 8 C -0.010 4.010 9 N -0.918 5.918 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.149 3.851 15 C 0.119 3.881 16 H 0.092 0.908 17 N -0.714 5.714 18 C 0.511 3.489 19 O -0.527 6.527 20 C -0.109 4.109 21 C -0.032 4.032 22 C -0.098 4.098 23 C -0.088 4.088 24 C -0.113 4.113 25 C 0.146 3.854 26 N -0.494 5.494 27 C 0.069 3.931 28 C -0.153 4.153 29 C -0.021 4.021 30 C -0.103 4.103 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.252 0.748 37 H 0.012 0.988 38 H 0.111 0.889 39 H 0.394 0.606 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.162 0.838 45 H 0.150 0.850 46 H 0.136 0.864 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 10.367 15.223 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.091 0.909 4 C 0.014 3.986 5 N -0.330 5.330 6 C -0.354 4.354 7 H 0.097 0.903 8 C -0.206 4.206 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.023 3.977 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.364 5.364 18 C 0.296 3.704 19 O -0.402 6.402 20 C -0.149 4.149 21 C -0.034 4.034 22 C -0.116 4.116 23 C -0.108 4.108 24 C -0.115 4.115 25 C -0.026 4.026 26 N -0.202 5.202 27 C -0.073 4.073 28 C -0.173 4.173 29 C -0.026 4.026 30 C -0.121 4.121 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.129 0.871 39 H 0.227 0.773 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.147 0.853 43 H 0.152 0.848 44 H 0.179 0.821 45 H 0.168 0.832 46 H 0.154 0.846 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.424 8.853 16.083 20.636 hybrid contribution 0.705 0.495 -1.547 1.771 sum -8.719 9.348 14.536 19.357 Atomic orbital electron populations 1.21736 0.95012 1.01872 1.00810 1.22431 0.95177 0.99135 0.96376 0.90853 1.21347 0.90288 0.93179 0.93746 1.44405 1.30845 1.50488 1.07251 1.19112 1.06230 1.17120 0.92906 0.90294 1.24822 0.98815 1.00565 0.96410 1.69812 1.29914 1.46016 1.10853 0.86001 0.79962 0.80472 0.79063 1.20506 1.21760 1.21676 1.22217 0.89361 1.01060 0.85050 1.22699 1.01013 0.92391 0.82479 0.89028 1.45865 1.73978 1.10921 1.05686 1.20277 0.77087 0.88940 0.84065 1.90769 1.48012 1.15408 1.86037 1.20800 1.05377 0.97872 0.90860 1.19160 0.93403 0.96521 0.94341 1.20852 0.98322 0.96936 0.95502 1.20934 0.96550 0.97671 0.95606 1.19037 0.94163 1.00543 0.97742 1.23191 0.95752 0.92838 0.90783 1.67405 0.98728 1.21183 1.32921 1.22116 0.96305 0.94858 0.94055 1.21890 0.97753 1.00586 0.97079 1.18112 0.92986 0.96406 0.95084 1.20736 0.97599 0.98945 0.94854 0.93172 0.92898 0.92505 0.95495 0.95888 0.93750 0.96965 0.87135 0.77250 0.87623 0.87983 0.85289 0.84785 0.82084 0.83248 0.84642 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.16 37.16 0.34 -1.48 16 2 C -0.11 -1.82 3.20 -88.78 -0.28 -2.10 16 3 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 4 C 0.14 2.87 6.84 -3.06 -0.02 2.85 16 5 N -0.60 -15.51 3.39 -170.07 -0.58 -16.08 16 6 C -0.23 -6.33 10.27 -15.06 -0.15 -6.49 16 7 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 8 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 9 N -0.92 -27.26 10.09 55.49 0.56 -26.70 16 10 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.15 3.64 5.58 -2.53 -0.01 3.63 16 15 C 0.12 2.25 2.87 -65.78 -0.19 2.06 16 16 H 0.09 1.96 7.44 -51.93 -0.39 1.57 16 17 N -0.71 -10.53 5.20 -51.73 -0.27 -10.80 16 18 C 0.51 7.87 7.82 -10.98 -0.09 7.78 16 19 O -0.53 -10.83 15.67 5.55 0.09 -10.74 16 20 C -0.11 -1.13 5.80 -29.03 -0.17 -1.30 16 21 C -0.03 -0.39 4.34 -104.93 -0.46 -0.84 16 22 C -0.10 -1.16 9.58 -39.90 -0.38 -1.54 16 23 C -0.09 -0.97 9.81 -39.52 -0.39 -1.35 16 24 C -0.11 -1.35 5.74 -106.86 -0.61 -1.96 16 25 C 0.15 1.60 11.05 -16.97 -0.19 1.42 16 26 N -0.49 -5.98 10.30 -13.15 -0.14 -6.11 16 27 C 0.07 0.74 11.07 -17.96 -0.20 0.54 16 28 C -0.15 -1.61 9.88 -39.40 -0.39 -2.00 16 29 C -0.02 -0.25 5.75 -106.81 -0.61 -0.87 16 30 C -0.10 -1.21 9.42 -39.56 -0.37 -1.58 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.03 0.55 7.76 -51.93 -0.40 0.15 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.11 3.20 5.87 -51.93 -0.30 2.90 16 39 H 0.39 4.41 8.57 -40.82 -0.35 4.06 16 40 H 0.11 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.10 0.75 8.07 -51.93 -0.42 0.33 16 42 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -35.73 388.10 -10.67 -46.40 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.89 Total: 4.51 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -4.27 Total: -3.62 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.42 Total: -59.70 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.73 -10.67 -46.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080116607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.150 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds