Wall clock time and date at job start Sat Apr 11 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.77889 * 2 1 4 4 C 1.54319 * 110.71847 * 236.75128 * 2 1 3 5 5 N 1.47028 * 107.26947 * 219.44394 * 4 2 1 6 6 C 1.36932 * 125.64498 * 178.99120 * 5 4 2 7 7 H 1.08005 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99874 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99797 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47554 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47364 * 120.00094 * 10 8 6 13 13 H 1.48507 * 109.46958 * 239.99680 * 10 8 6 14 14 C 1.47419 * 108.70371 * 358.94679 * 5 4 2 15 15 C 1.54912 * 104.83391 * 24.12534 * 14 5 4 16 16 H 1.08995 * 111.03512 * 81.08074 * 15 14 5 17 17 N 1.46498 * 111.00363 * 204.91815 * 15 14 5 18 18 C 1.34777 * 119.99828 * 266.91713 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.50701 * 109.47355 * 180.02562 * 20 18 17 22 22 C 1.39369 * 119.48542 * 90.00239 * 21 20 18 23 23 C 1.36177 * 121.08342 * 179.97438 * 22 21 20 24 24 C 1.40372 * 119.51310 * 0.02562 * 23 22 21 25 25 C 1.40439 * 122.07259 * 180.02562 * 24 23 22 26 26 N 1.31247 * 119.87764 * 179.97438 * 25 24 23 27 27 C 1.32606 * 122.77482 * 359.97438 * 26 25 24 28 28 C 1.36173 * 121.88253 * 0.02562 * 27 26 25 29 29 C 1.40697 * 118.66801 * 359.97438 * 28 27 26 30 30 C 1.36215 * 119.48948 * 269.72536 * 21 20 18 31 31 H 1.09003 * 109.47263 * 296.77022 * 1 2 3 32 32 H 1.09000 * 109.46908 * 56.76956 * 1 2 3 33 33 H 1.09003 * 109.47343 * 176.76659 * 1 2 3 34 34 H 1.08999 * 109.88838 * 338.86726 * 4 2 1 35 35 H 1.09003 * 109.87868 * 100.03224 * 4 2 1 36 36 H 0.97002 * 120.00075 * 180.02562 * 9 8 6 37 37 H 1.09002 * 110.36625 * 265.29189 * 14 5 4 38 38 H 1.08996 * 110.36984 * 142.96546 * 14 5 4 39 39 H 0.97001 * 120.00384 * 87.20160 * 17 15 14 40 40 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 41 41 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 42 42 H 1.07999 * 119.46217 * 359.97438 * 22 21 20 43 43 H 1.08002 * 120.24121 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.06055 * 359.95040 * 25 24 23 45 45 H 1.07999 * 119.06003 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.66952 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.26078 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7914 -1.2071 5 7 3.2445 -1.5509 -0.7387 6 6 4.0044 -2.3970 -1.5014 7 1 3.7618 -2.5503 -2.5426 8 6 5.0866 -3.0578 -0.9363 9 7 5.3825 -2.8706 0.3324 10 14 6.1236 -4.2114 -1.9770 11 1 5.5865 -4.2474 -3.3610 12 1 7.5275 -3.7279 -2.0027 13 1 6.0810 -5.5768 -1.3943 14 6 3.4632 -1.2498 0.6878 15 6 2.0789 -0.7954 1.2140 16 1 1.4447 -1.6530 1.4381 17 7 2.2214 0.0698 2.3875 18 6 2.1816 -0.4617 3.6254 19 8 2.0328 -1.6570 3.7677 20 6 2.3219 0.4290 4.8329 21 6 2.2444 -0.4061 6.0850 22 6 3.4124 -0.9387 6.6276 23 6 3.3801 -1.6974 7.7580 24 6 2.1509 -1.9483 8.3876 25 6 2.0554 -2.7226 9.5554 26 7 0.8834 -2.9294 10.1087 27 6 -0.2422 -2.4342 9.6125 28 6 -0.2566 -1.6712 8.4847 29 6 0.9622 -1.4053 7.8341 30 6 1.0346 -0.6239 6.6719 31 1 -0.3634 0.4629 0.9175 32 1 -0.3633 0.5632 -0.8596 33 1 -0.3634 -1.0260 -0.0580 34 1 1.3130 -1.4760 -1.5774 35 1 2.3741 -0.1026 -1.9976 36 1 6.1389 -3.3320 0.7272 37 1 4.1930 -0.4478 0.7986 38 1 3.7959 -2.1425 1.2173 39 1 2.3403 1.0258 2.2739 40 1 3.2835 0.9410 4.7969 41 1 1.5182 1.1654 4.8365 42 1 4.3586 -0.7467 6.1438 43 1 4.2937 -2.1031 8.1671 44 1 2.9447 -3.1473 9.9970 45 1 -1.1742 -2.6426 10.1168 46 1 -1.1848 -1.2774 8.0979 47 1 0.1378 -0.2018 6.2431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080116607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:10 Heat of formation + Delta-G solvation = 16.628254 kcal Electronic energy + Delta-G solvation = -28484.809760 eV Core-core repulsion = 24631.763044 eV Total energy + Delta-G solvation = -3853.046716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 4.78 seconds Orbital eigenvalues (eV) -41.81120 -40.89398 -39.30910 -38.23999 -35.60763 -34.33202 -34.02389 -33.49566 -32.16116 -30.75772 -29.99903 -28.56209 -27.32708 -25.40357 -24.86892 -23.93076 -23.18159 -22.22482 -21.56895 -20.90514 -18.93458 -18.75117 -18.16178 -17.95673 -17.60958 -17.15254 -16.90685 -16.05622 -15.86378 -15.62824 -15.50075 -15.21172 -14.89682 -14.79430 -14.45136 -14.39425 -14.34396 -14.18766 -13.91809 -13.56968 -13.37223 -13.08889 -12.93080 -12.86832 -12.83472 -12.67522 -12.59080 -12.15926 -12.01439 -11.95130 -11.85251 -11.63827 -11.41004 -11.15536 -10.89914 -10.78844 -10.47466 -9.93691 -9.87286 -8.99462 -8.90835 -7.78735 -5.25061 -0.57224 -0.08822 0.98567 1.43388 1.45369 1.55491 1.73949 1.96459 2.38200 2.50486 3.13111 3.30713 3.49588 3.57183 3.64232 3.69036 3.73638 3.89158 3.93533 4.04663 4.08075 4.09766 4.13998 4.25421 4.39368 4.51807 4.56121 4.62295 4.63450 4.67067 4.71326 4.80148 4.87213 4.89124 5.03991 5.08851 5.13592 5.13794 5.23437 5.32413 5.39452 5.44947 5.50123 5.54334 5.68106 5.71214 5.81537 5.90656 6.27744 6.69402 7.00789 7.06632 7.41056 7.75807 8.37921 9.21608 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.002595 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.007924 B =10786.147846 C =12096.743316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 H 0.101 0.899 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.085 0.915 8 C -0.071 4.071 9 N -0.947 5.947 10 Si 0.980 3.020 11 H -0.263 1.263 12 H -0.290 1.290 13 H -0.295 1.295 14 C 0.156 3.844 15 C 0.138 3.862 16 H 0.062 0.938 17 N -0.701 5.701 18 C 0.508 3.492 19 O -0.585 6.585 20 C -0.095 4.095 21 C -0.049 4.049 22 C -0.119 4.119 23 C -0.092 4.092 24 C -0.132 4.132 25 C 0.139 3.861 26 N -0.516 5.516 27 C 0.059 3.941 28 C -0.156 4.156 29 C -0.044 4.044 30 C -0.110 4.110 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.027 0.973 35 H 0.033 0.967 36 H 0.244 0.756 37 H -0.006 1.006 38 H 0.058 0.942 39 H 0.416 0.584 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.156 0.844 44 H 0.186 0.814 45 H 0.174 0.826 46 H 0.161 0.839 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 12.484 15.066 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.112 4.112 3 H 0.119 0.881 4 C 0.006 3.994 5 N -0.355 5.355 6 C -0.368 4.368 7 H 0.102 0.898 8 C -0.263 4.263 9 N -0.597 5.597 10 Si 0.809 3.191 11 H -0.187 1.187 12 H -0.217 1.217 13 H -0.222 1.222 14 C 0.030 3.970 15 C 0.031 3.969 16 H 0.081 0.919 17 N -0.353 5.353 18 C 0.296 3.704 19 O -0.465 6.465 20 C -0.135 4.135 21 C -0.050 4.050 22 C -0.137 4.137 23 C -0.111 4.111 24 C -0.134 4.134 25 C -0.031 4.031 26 N -0.224 5.224 27 C -0.084 4.084 28 C -0.176 4.176 29 C -0.049 4.049 30 C -0.128 4.128 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.012 0.988 38 H 0.077 0.923 39 H 0.254 0.746 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.174 0.826 44 H 0.203 0.797 45 H 0.192 0.808 46 H 0.178 0.822 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.880 11.041 15.909 22.212 hybrid contribution 1.129 -0.191 -1.489 1.879 sum -9.751 10.850 14.421 20.512 Atomic orbital electron populations 1.21688 0.92118 1.01731 1.03108 1.22373 0.97329 0.99112 0.92396 0.88132 1.21623 0.88584 0.93300 0.95882 1.44723 1.32013 1.50896 1.07843 1.19518 1.06469 1.17282 0.93499 0.89768 1.25701 1.00431 1.02544 0.97613 1.70120 1.30101 1.47040 1.12439 0.84976 0.78119 0.77830 0.78219 1.18730 1.21679 1.22232 1.21888 0.92216 0.98229 0.84677 1.22092 0.96934 0.92988 0.84896 0.91934 1.45671 1.73509 1.11577 1.04524 1.21212 0.75198 0.88778 0.85207 1.90753 1.50518 1.18322 1.86858 1.20824 1.08291 0.97135 0.87202 1.19402 0.93561 0.97078 0.94993 1.21104 0.98849 0.97643 0.96108 1.21230 0.97283 0.97226 0.95376 1.19301 0.94627 1.01085 0.98351 1.23599 0.96438 0.92542 0.90568 1.67451 0.99435 1.21927 1.33637 1.22577 0.96882 0.94590 0.94332 1.22179 0.98222 1.00315 0.96837 1.18485 0.93835 0.96888 0.95702 1.21007 0.98266 0.98804 0.94741 0.90977 0.90428 0.93964 0.95477 0.94904 0.94625 0.98809 0.92343 0.74630 0.85183 0.83928 0.84814 0.82621 0.79735 0.80845 0.82168 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.16 71.98 0.66 -2.35 16 2 C -0.09 -2.81 3.20 -9.60 -0.03 -2.84 16 3 H 0.10 2.55 8.00 -2.39 -0.02 2.53 16 4 C 0.13 5.24 6.84 86.73 0.59 5.83 16 5 N -0.63 -32.92 3.39 -691.98 -2.35 -35.27 16 6 C -0.24 -13.67 10.27 84.04 0.86 -12.81 16 7 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 8 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 9 N -0.95 -58.83 10.09 21.65 0.22 -58.61 16 10 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 11 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 14 C 0.16 7.91 5.58 86.86 0.48 8.40 16 15 C 0.14 5.18 2.87 46.39 0.13 5.31 16 16 H 0.06 2.75 7.44 -2.39 -0.02 2.73 16 17 N -0.70 -19.65 5.20 -435.96 -2.27 -21.91 16 18 C 0.51 15.22 7.82 87.66 0.69 15.91 16 19 O -0.59 -24.71 15.67 -3.04 -0.05 -24.76 16 20 C -0.10 -1.74 5.80 29.10 0.17 -1.57 16 21 C -0.05 -1.11 4.34 -20.06 -0.09 -1.20 16 22 C -0.12 -2.79 9.58 22.06 0.21 -2.58 16 23 C -0.09 -2.01 9.81 22.31 0.22 -1.79 16 24 C -0.13 -3.12 5.74 -21.31 -0.12 -3.25 16 25 C 0.14 3.03 11.05 85.32 0.94 3.97 16 26 N -0.52 -12.21 10.30 -195.53 -2.01 -14.23 16 27 C 0.06 1.19 11.07 84.09 0.93 2.12 16 28 C -0.16 -3.10 9.88 22.39 0.22 -2.88 16 29 C -0.04 -1.05 5.75 -21.28 -0.12 -1.17 16 30 C -0.11 -2.45 9.42 22.28 0.21 -2.24 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.11 8.06 -2.39 -0.02 1.09 16 34 H 0.03 1.08 7.76 -2.39 -0.02 1.06 16 35 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 37 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.06 3.60 5.87 -2.39 -0.01 3.58 16 39 H 0.42 7.98 8.57 -92.71 -0.79 7.19 16 40 H 0.13 1.78 8.08 -2.39 -0.02 1.76 16 41 H 0.14 1.47 8.07 -2.39 -0.02 1.45 16 42 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 43 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 44 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 46 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -83.48 388.10 2.18 -81.30 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.19 Total: 21.34 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 6.43 Total: 3.21 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -6.41 Total: -130.02 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -83.48 2.18 -81.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080116607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.928 kcal (2) G-P(sol) polarization free energy of solvation -83.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.78 seconds