Wall clock time and date at job start Sat Apr 11 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.63983 * 2 1 4 4 C 1.54328 * 110.87343 * 236.75078 * 2 1 3 5 5 N 1.47017 * 107.27004 * 219.37450 * 4 2 1 6 6 C 1.36940 * 125.64992 * 178.99748 * 5 4 2 7 7 H 1.07998 * 120.00377 * 179.97438 * 6 5 4 8 8 C 1.38817 * 119.99524 * 359.97438 * 6 5 4 9 9 N 1.31614 * 120.00181 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99756 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47287 * 89.99682 * 10 8 6 12 12 H 1.48502 * 109.46830 * 209.99596 * 10 8 6 13 13 H 1.48500 * 109.47008 * 329.99410 * 10 8 6 14 14 C 1.47471 * 108.72469 * 358.97425 * 5 4 2 15 15 C 1.54907 * 104.80775 * 24.07279 * 14 5 4 16 16 H 1.09003 * 111.00787 * 81.13659 * 15 14 5 17 17 C 1.52999 * 111.00197 * 204.94702 * 15 14 5 18 18 N 1.46505 * 109.47331 * 290.41636 * 17 15 14 19 19 C 1.34775 * 119.99951 * 179.97438 * 18 17 15 20 20 O 1.21565 * 120.00246 * 0.02562 * 19 18 17 21 21 C 1.47753 * 119.99950 * 180.02562 * 19 18 17 22 22 C 1.40606 * 120.27333 * 359.97438 * 21 19 18 23 23 N 1.30797 * 121.54614 * 180.02562 * 22 21 19 24 24 C 1.33820 * 121.72150 * 359.95141 * 23 22 21 25 25 C 1.40517 * 120.83434 * 179.97438 * 24 23 22 26 26 C 1.36136 * 119.81794 * 180.02562 * 25 24 23 27 27 C 1.39345 * 121.09097 * 0.02562 * 26 25 24 28 28 C 1.36132 * 120.82631 * 359.97438 * 27 26 25 29 29 C 1.40538 * 119.62289 * 0.02562 * 28 27 26 30 30 C 1.39015 * 120.27301 * 180.02562 * 21 19 18 31 31 H 1.08993 * 109.47344 * 296.85576 * 1 2 3 32 32 H 1.09003 * 109.46783 * 56.86418 * 1 2 3 33 33 H 1.08998 * 109.46780 * 176.85579 * 1 2 3 34 34 H 1.08998 * 109.88237 * 338.78949 * 4 2 1 35 35 H 1.09001 * 109.87813 * 99.80092 * 4 2 1 36 36 H 0.97002 * 120.00031 * 180.02562 * 9 8 6 37 37 H 1.08997 * 110.34989 * 265.25481 * 14 5 4 38 38 H 1.09001 * 110.40500 * 142.91702 * 14 5 4 39 39 H 1.09002 * 109.47234 * 170.42100 * 17 15 14 40 40 H 1.09004 * 109.47328 * 50.42130 * 17 15 14 41 41 H 0.97000 * 119.99621 * 0.02562 * 18 17 15 42 42 H 1.08003 * 119.22513 * 0.02562 * 22 21 19 43 43 H 1.08004 * 120.09126 * 0.06877 * 25 24 23 44 44 H 1.07997 * 119.45524 * 180.28115 * 26 25 24 45 45 H 1.07995 * 119.58374 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.18719 * 180.02562 * 28 27 26 47 47 H 1.07999 * 121.01516 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7353 6 6 4.0128 -2.3916 -1.4964 7 1 4.8557 -2.9028 -1.0554 8 6 3.7030 -2.5906 -2.8349 9 7 2.6755 -1.9680 -3.3722 10 14 4.7439 -3.7432 -3.8730 11 1 4.1868 -5.1177 -3.7963 12 1 4.7336 -3.2830 -5.2848 13 1 6.1386 -3.7452 -3.3631 14 6 3.4652 -1.2455 0.6920 15 6 2.0789 -0.7934 1.2151 16 1 1.4465 -1.6526 1.4387 17 6 2.2236 0.1111 2.4406 18 7 2.7018 -0.6796 3.5775 19 6 2.9045 -0.0886 4.7716 20 8 2.6902 1.1005 4.9056 21 6 3.3873 -0.8859 5.9181 22 6 3.6365 -2.2617 5.7698 23 7 4.0637 -2.9912 6.7679 24 6 4.2860 -2.4663 7.9786 25 6 4.7445 -3.2675 9.0379 26 6 4.9633 -2.7120 10.2613 27 6 4.7395 -1.3551 10.4859 28 6 4.2954 -0.5463 9.4850 29 6 4.0589 -1.0860 8.2091 30 6 3.5979 -0.2822 7.1525 31 1 -0.3633 0.4642 0.9168 32 1 -0.3633 0.5618 -0.8606 33 1 -0.3633 -1.0261 -0.0564 34 1 1.3191 -1.4773 -1.5770 35 1 2.3750 -0.1017 -1.9974 36 1 2.4588 -2.1074 -4.3074 37 1 4.1933 -0.4422 0.8039 38 1 3.7985 -2.1374 1.2227 39 1 1.2561 0.5498 2.6846 40 1 2.9383 0.9050 2.2239 41 1 2.8731 -1.6284 3.4705 42 1 3.4713 -2.7271 4.8093 43 1 4.9236 -4.3211 8.8818 44 1 5.3201 -3.3323 11.0702 45 1 4.9207 -0.9399 11.4662 46 1 4.1258 0.5041 9.6704 47 1 3.4134 0.7723 7.2949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093006372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:25 Heat of formation + Delta-G solvation = 38.246564 kcal Electronic energy + Delta-G solvation = -28039.450151 eV Core-core repulsion = 24187.340875 eV Total energy + Delta-G solvation = -3852.109276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.28456 -39.68021 -38.05767 -37.23027 -34.82614 -33.78235 -33.00303 -31.28042 -30.73591 -30.44281 -29.18046 -26.14353 -25.50197 -24.48352 -24.38045 -22.72869 -22.46616 -21.18605 -20.03545 -19.44176 -18.49036 -18.09277 -17.48780 -16.79326 -16.15399 -15.82250 -15.45367 -14.95950 -14.94691 -14.60031 -14.55069 -14.23989 -13.91699 -13.75404 -13.72507 -13.34913 -13.22889 -12.92050 -12.53921 -12.19059 -12.16768 -11.89211 -11.84539 -11.69671 -11.40972 -11.22617 -10.87506 -10.82245 -10.78496 -10.48756 -10.13977 -10.01242 -9.93195 -9.85277 -9.66873 -9.55709 -9.26101 -9.02017 -8.67466 -8.60790 -6.83888 -5.71780 -3.05346 -0.12927 0.24908 1.50180 2.24437 3.01933 3.04305 3.39649 3.44853 3.46694 3.75866 3.83035 4.17729 4.33601 4.41454 4.43623 4.48733 4.62814 4.71826 4.83162 5.01052 5.08270 5.18707 5.29334 5.36663 5.49006 5.49801 5.51846 5.55539 5.64235 5.73297 5.84095 5.89980 5.98732 6.00319 6.06198 6.08080 6.16898 6.25846 6.35309 6.38151 6.47105 6.54867 6.61213 6.73876 6.92344 7.39796 7.49302 7.56330 7.63350 7.83425 8.07048 8.25395 9.21587 9.81835 10.47709 11.39767 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002222 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.147911 B =12596.107251 C =13987.221737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.921 5.921 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.141 3.859 15 C -0.114 4.114 16 H 0.081 0.919 17 C 0.133 3.867 18 N -0.716 5.716 19 C 0.562 3.438 20 O -0.539 6.539 21 C -0.190 4.190 22 C 0.164 3.836 23 N -0.474 5.474 24 C 0.141 3.859 25 C -0.098 4.098 26 C -0.093 4.093 27 C -0.121 4.121 28 C -0.086 4.086 29 C -0.114 4.114 30 C 0.011 3.989 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.252 0.748 37 H 0.020 0.980 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.401 0.599 42 H 0.164 0.836 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 1.843 26.312 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.134 4.134 16 H 0.100 0.900 17 C 0.009 3.991 18 N -0.367 5.367 19 C 0.348 3.652 20 O -0.418 6.418 21 C -0.196 4.196 22 C -0.010 4.010 23 N -0.181 5.181 24 C 0.020 3.980 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.139 4.139 28 C -0.104 4.104 29 C -0.116 4.116 30 C -0.015 4.015 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.237 0.763 42 H 0.181 0.819 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.152 0.848 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.134 1.699 26.113 26.169 hybrid contribution 0.476 -0.206 -0.669 0.846 sum 0.610 1.493 25.444 25.495 Atomic orbital electron populations 1.21695 0.95275 1.01654 1.00581 1.22442 0.95172 0.99129 0.96250 0.91400 1.21214 0.89044 0.93133 0.90700 1.44467 1.32458 1.51700 1.04599 1.19050 1.07477 1.17861 0.91291 0.90480 1.24805 0.98442 1.00331 0.96910 1.69959 1.28741 1.45567 1.12608 0.86126 0.79554 0.80342 0.79782 1.21608 1.21692 1.20720 1.21595 0.92972 0.97056 0.86922 1.22698 0.99516 0.98133 0.93069 0.90031 1.21467 0.99604 0.94025 0.83967 1.45998 1.67205 1.13381 1.10105 1.17934 0.77848 0.86940 0.82492 1.90780 1.51984 1.15003 1.83987 1.21015 1.07026 0.95821 0.95709 1.23123 0.90793 0.89349 0.97771 1.67977 1.12629 1.38281 0.99242 1.19045 0.96350 0.90494 0.92102 1.20862 0.99091 1.00352 0.91306 1.21006 0.97918 0.95295 0.97030 1.20960 0.99553 0.93847 0.99564 1.21082 0.97694 1.00309 0.91354 1.18847 1.02943 0.94442 0.95341 1.21975 0.89036 1.00457 0.90050 0.93642 0.92748 0.92687 0.93299 0.94027 0.93760 0.96282 0.94598 0.91325 0.91077 0.76296 0.81890 0.84385 0.85047 0.85230 0.84821 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.17 37.16 0.34 -1.70 16 2 C -0.11 -1.94 3.01 -88.78 -0.27 -2.21 16 3 H 0.07 1.16 8.04 -51.93 -0.42 0.75 16 4 C 0.18 4.33 4.97 -3.06 -0.02 4.32 16 5 N -0.61 -15.10 3.40 -170.04 -0.58 -15.68 16 6 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -26.84 10.31 55.49 0.57 -26.27 16 10 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.14 2.74 6.56 -2.51 -0.02 2.73 16 15 C -0.11 -1.82 2.51 -88.47 -0.22 -2.04 16 16 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 17 C 0.13 1.83 5.12 -4.04 -0.02 1.81 16 18 N -0.72 -8.78 5.40 -61.27 -0.33 -9.11 16 19 C 0.56 7.43 7.77 -12.37 -0.10 7.34 16 20 O -0.54 -8.77 16.38 5.31 0.09 -8.68 16 21 C -0.19 -2.17 5.89 -104.83 -0.62 -2.79 16 22 C 0.16 1.76 10.68 -17.10 -0.18 1.58 16 23 N -0.47 -5.59 10.30 -10.67 -0.11 -5.70 16 24 C 0.14 1.53 6.61 -84.79 -0.56 0.97 16 25 C -0.10 -0.83 9.97 -39.48 -0.39 -1.23 16 26 C -0.09 -0.59 9.94 -39.93 -0.40 -0.99 16 27 C -0.12 -0.74 9.96 -39.93 -0.40 -1.14 16 28 C -0.09 -0.63 9.77 -39.47 -0.39 -1.01 16 29 C -0.11 -1.12 5.74 -106.82 -0.61 -1.74 16 30 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.05 1.27 7.02 -51.93 -0.36 0.91 16 35 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.02 0.39 7.96 -51.93 -0.41 -0.03 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 41 H 0.40 4.17 6.46 -40.82 -0.26 3.90 16 42 H 0.16 1.38 6.37 -52.48 -0.33 1.05 16 43 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 44 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.15 1.43 7.70 -52.49 -0.40 1.03 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -33.49 385.71 -10.80 -44.29 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.77 Total: 1.48 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -4.46 Total: -3.13 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.45 Total: -56.76 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.49 -10.80 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093006372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.536 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds