Wall clock time and date at job start Sat Apr 11 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 O 1.21283 * 120.00261 * 120.00003 * 4 2 1 6 6 N 1.34777 * 120.00075 * 300.00543 * 4 2 1 7 7 C 1.46500 * 120.00084 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47249 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.47134 * 59.99161 * 8 7 6 10 10 O 1.42906 * 109.46746 * 299.99894 * 8 7 6 11 11 C 1.52995 * 109.47577 * 180.02562 * 8 7 6 12 12 N 1.46898 * 109.47353 * 184.99932 * 11 8 7 13 13 C 1.46905 * 110.99700 * 179.97438 * 12 11 8 14 14 C 1.50707 * 109.46689 * 180.02562 * 13 12 11 15 15 O 1.21285 * 119.99877 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99553 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99649 * 179.97438 * 16 14 13 18 18 H 1.07993 * 120.00545 * 359.97438 * 17 16 14 19 19 C 1.38958 * 119.99827 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99975 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99867 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.46970 * 90.00714 * 21 19 17 23 23 H 1.48502 * 109.46824 * 210.00439 * 21 19 17 24 24 H 1.48502 * 109.47025 * 330.00048 * 21 19 17 25 25 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 26 26 C 1.34946 * 126.03231 * 325.00139 * 25 2 1 27 27 C 1.35323 * 107.74129 * 179.97438 * 26 25 2 28 28 C 1.39866 * 107.92129 * 359.97438 * 27 26 25 29 29 N 1.30833 * 108.20173 * 359.74480 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.96996 * 119.99636 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.47049 * 299.99628 * 7 6 4 35 35 H 1.09000 * 109.47381 * 59.99594 * 7 6 4 36 36 H 0.96698 * 113.99791 * 299.99379 * 10 8 7 37 37 H 1.09007 * 109.46399 * 304.99928 * 11 8 7 38 38 H 1.08996 * 109.47584 * 64.99349 * 11 8 7 39 39 H 1.00899 * 111.00306 * 56.04710 * 12 11 8 40 40 H 1.08996 * 109.47261 * 299.99601 * 13 12 11 41 41 H 1.08992 * 109.47161 * 60.00113 * 13 12 11 42 42 H 0.97000 * 120.00336 * 359.97438 * 16 14 13 43 43 H 0.96997 * 120.00057 * 179.97438 * 20 19 17 44 44 H 1.08000 * 126.13231 * 359.97438 * 26 25 2 45 45 H 1.08004 * 126.03583 * 180.02562 * 27 26 25 46 46 H 1.08000 * 125.89925 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9404 3.6507 8 6 1.6860 -0.2190 4.8999 9 1 0.5961 -0.2190 4.9003 10 8 2.1622 1.1284 4.8994 11 6 2.1971 -0.9394 6.1491 12 7 1.6117 -0.3200 7.3456 13 6 2.0806 -0.9880 8.5671 14 6 1.4599 -0.3270 9.7709 15 8 0.7020 0.6086 9.6255 16 7 1.7479 -0.7750 11.0089 17 6 1.1836 -0.1734 12.1040 18 1 0.5088 0.6597 11.9747 19 6 1.4801 -0.6356 13.3805 20 7 0.9397 -0.0587 14.4302 21 14 2.6470 -2.0772 13.6042 22 1 4.0377 -1.5728 13.7334 23 1 2.2767 -2.8279 14.8309 24 1 2.5539 -2.9768 12.4263 25 7 2.0184 -0.6906 -1.1962 26 6 1.4402 -1.7558 -1.7896 27 6 2.1962 -2.0921 -2.8603 28 6 3.2728 -1.2016 -2.9238 29 7 3.1641 -0.3574 -1.9302 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.1493 0.5387 2.5435 34 1 1.8328 -1.9682 3.6508 35 1 3.2856 -0.9399 3.6505 36 1 3.1262 1.2048 4.8991 37 1 1.9091 -1.9899 6.1059 38 1 3.2833 -0.8621 6.1944 39 1 0.6039 -0.3214 7.2973 40 1 1.7916 -2.0386 8.5406 41 1 3.1661 -0.9112 8.6293 42 1 2.3544 -1.5231 11.1252 43 1 1.1464 -0.3816 15.3212 44 1 0.5361 -2.2512 -1.4676 45 1 2.0020 -2.9042 -3.5454 46 1 4.0560 -1.2068 -3.6675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320199062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:36 Heat of formation + Delta-G solvation = -28.119433 kcal Electronic energy + Delta-G solvation = -28028.741059 eV Core-core repulsion = 23762.904675 eV Total energy + Delta-G solvation = -4265.836385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68847 -40.14872 -38.70837 -38.03430 -35.20888 -35.09623 -34.60195 -33.88456 -31.70088 -30.81433 -30.36368 -29.74641 -27.52554 -25.63855 -24.64879 -23.21077 -22.13616 -21.79784 -21.40070 -20.26792 -19.42354 -18.43567 -18.33661 -17.59396 -17.10784 -16.62512 -15.97363 -15.81030 -15.62473 -15.32161 -15.09102 -14.84628 -14.62240 -14.45277 -14.15423 -13.97337 -13.72931 -13.44821 -13.30587 -13.24466 -13.12438 -12.93152 -12.74822 -12.64046 -12.22091 -12.17830 -11.97238 -11.75280 -11.30878 -11.18282 -11.02945 -10.63174 -10.62276 -10.32167 -10.00007 -9.72879 -9.62471 -9.60155 -8.93030 -8.63549 -8.24245 -8.19267 -6.33655 -3.85276 1.46722 1.91570 2.03057 2.56559 2.66835 2.99732 3.04628 3.12895 3.69798 3.79074 3.87469 4.03636 4.07663 4.16878 4.23308 4.42091 4.51322 4.56077 4.59656 4.78877 4.80188 4.85797 4.92457 5.10140 5.17593 5.19453 5.23374 5.28290 5.36637 5.45220 5.55472 5.68871 5.70199 5.73229 5.83290 5.88199 6.30092 6.56361 6.92335 6.94537 7.35760 7.36497 7.50139 7.55179 7.63311 8.11611 8.56819 8.92228 9.39495 9.79411 10.79426 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036151 B = 0.001486 C = 0.001456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.339187 B =18842.329587 C =19219.817611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.130 0.870 4 C 0.500 3.500 5 O -0.522 6.522 6 N -0.716 5.716 7 C 0.088 3.912 8 C 0.102 3.898 9 H 0.106 0.894 10 O -0.543 6.543 11 C 0.030 3.970 12 N -0.658 5.658 13 C 0.048 3.952 14 C 0.449 3.551 15 O -0.563 6.563 16 N -0.590 5.590 17 C -0.306 4.306 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.270 1.270 25 N -0.357 5.357 26 C 0.067 3.933 27 C -0.274 4.274 28 C 0.048 3.952 29 N -0.292 5.292 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.408 0.592 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.376 0.624 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.352 0.648 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.370 0.630 43 H 0.274 0.726 44 H 0.170 0.830 45 H 0.148 0.852 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 -5.080 -32.581 33.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.148 0.852 4 C 0.284 3.716 5 O -0.396 6.396 6 N -0.370 5.370 7 C -0.037 4.037 8 C 0.041 3.959 9 H 0.124 0.876 10 O -0.347 6.347 11 C -0.101 4.101 12 N -0.291 5.291 13 C -0.085 4.085 14 C 0.235 3.765 15 O -0.445 6.445 16 N -0.230 5.230 17 C -0.435 4.435 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.520 5.520 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 N -0.139 5.139 26 C -0.078 4.078 27 C -0.303 4.303 28 C -0.139 4.139 29 N -0.112 5.112 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.244 0.756 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.224 0.776 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.171 0.829 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.187 0.813 45 H 0.165 0.835 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.752 -3.441 -31.756 31.990 hybrid contribution 0.500 -2.687 0.128 2.737 sum 2.253 -6.128 -31.628 32.294 Atomic orbital electron populations 1.22182 0.90344 1.04441 1.05054 1.21066 0.96225 0.97803 0.81163 0.85235 1.20749 0.80981 0.85180 0.84735 1.90786 1.36684 1.25739 1.86435 1.45783 1.53933 1.32420 1.04858 1.22115 1.00256 0.97056 0.84247 1.22097 0.99955 0.82866 0.90960 0.87607 1.86635 1.26992 1.24461 1.96648 1.22575 1.00777 0.96047 0.90698 1.59959 1.14427 1.55440 0.99247 1.21727 1.00878 0.95614 0.90297 1.19668 0.86273 0.86978 0.83606 1.90574 1.38712 1.29821 1.85368 1.42203 1.43281 1.31496 1.05988 1.19439 1.25774 1.15631 0.82648 0.86259 1.25040 0.97835 0.98078 0.95150 1.69619 1.43082 1.40964 0.98378 0.86668 0.81660 0.82469 0.78544 1.19584 1.20165 1.19577 1.48173 1.19994 1.24488 1.21238 1.22419 0.99828 0.90754 0.94821 1.21485 0.99177 1.06329 1.03333 1.23891 0.99084 0.93823 0.97076 1.77368 1.02178 1.24302 1.07364 0.89042 0.90811 0.89885 0.75638 0.90339 0.90782 0.77640 0.94348 0.90340 0.82866 0.93782 0.89464 0.79700 0.91586 0.81309 0.83468 0.79964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 8.73 37.16 0.32 -0.20 16 2 C 0.14 0.95 3.73 -69.08 -0.26 0.70 16 3 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.50 4.42 7.22 -10.99 -0.08 4.34 16 5 O -0.52 -7.05 16.42 5.55 0.09 -6.96 16 6 N -0.72 -4.68 5.34 -60.30 -0.32 -5.00 16 7 C 0.09 0.63 5.34 -4.04 -0.02 0.61 16 8 C 0.10 0.80 3.23 -26.74 -0.09 0.71 16 9 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 10 O -0.54 -5.06 13.03 -35.23 -0.46 -5.51 16 11 C 0.03 0.28 5.32 -3.83 -0.02 0.26 16 12 N -0.66 -9.35 6.07 -115.06 -0.70 -10.05 16 13 C 0.05 0.75 6.17 -4.97 -0.03 0.72 16 14 C 0.45 10.01 7.82 -10.98 -0.09 9.92 16 15 O -0.56 -14.98 15.78 5.55 0.09 -14.89 16 16 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 17 C -0.31 -8.61 10.16 -14.93 -0.15 -8.77 16 18 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 21 Si 0.88 19.18 27.74 -169.99 -4.71 14.46 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 25 N -0.36 -3.32 3.02 -55.99 -0.17 -3.49 16 26 C 0.07 0.54 10.57 -17.22 -0.18 0.36 16 27 C -0.27 -2.18 10.80 -40.01 -0.43 -2.61 16 28 C 0.05 0.43 12.03 -17.37 -0.21 0.22 16 29 N -0.29 -3.27 12.58 30.62 0.39 -2.88 16 30 H 0.09 0.13 7.56 -51.93 -0.39 -0.26 16 31 H 0.07 0.24 7.16 -51.93 -0.37 -0.14 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.41 1.86 7.77 -40.82 -0.32 1.54 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.38 2.61 9.04 45.56 0.41 3.02 16 37 H 0.04 0.33 8.14 -51.92 -0.42 -0.10 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.35 5.23 8.43 -39.29 -0.33 4.90 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.17 0.86 7.26 -52.49 -0.38 0.48 16 45 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 46 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -39.16 394.45 -6.29 -45.45 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -5.82 Total: 14.35 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.33 Total: 7.31 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.09 Total: -60.15 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.28 Total: -27.36 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.16 -6.29 -45.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320199062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.330 kcal (2) G-P(sol) polarization free energy of solvation -39.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds