Wall clock time and date at job start Sat Apr 11 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46933 * 2 1 4 4 N 1.46497 * 109.47047 * 119.99978 * 2 1 3 5 5 C 1.36940 * 119.99807 * 274.72337 * 4 2 1 6 6 H 1.07998 * 120.00232 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00069 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00486 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99881 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47254 * 89.99952 * 9 7 5 11 11 H 1.48502 * 109.47164 * 210.00343 * 9 7 5 12 12 H 1.48499 * 109.47319 * 330.00220 * 9 7 5 13 13 C 1.53000 * 109.47158 * 239.99858 * 2 1 3 14 14 H 1.08997 * 110.89073 * 299.29735 * 13 2 1 15 15 C 1.55163 * 111.00022 * 63.17895 * 13 2 1 16 16 C 1.54323 * 102.93878 * 153.57524 * 15 13 2 17 17 N 1.47025 * 107.27378 * 337.80255 * 16 15 13 18 18 C 1.34773 * 125.64863 * 178.97096 * 17 16 15 19 19 O 1.21569 * 119.99760 * 174.68025 * 18 17 16 20 20 C 1.47769 * 120.00147 * 354.68616 * 18 17 16 21 21 C 1.40635 * 119.80275 * 188.07462 * 20 18 17 22 22 C 1.35705 * 120.91843 * 179.97438 * 21 20 18 23 23 C 1.40760 * 120.11673 * 359.97438 * 22 21 20 24 24 N 1.33640 * 120.84156 * 180.02562 * 23 22 21 25 25 C 1.31121 * 121.39379 * 179.97438 * 24 23 22 26 26 C 1.39315 * 121.77451 * 0.02562 * 25 24 23 27 27 C 1.36578 * 119.90072 * 359.97438 * 26 25 24 28 28 C 1.40895 * 118.15450 * 359.97438 * 27 26 25 29 29 C 1.38542 * 119.80533 * 7.80428 * 20 18 17 30 30 C 1.47466 * 108.71911 * 358.97818 * 17 16 15 31 31 H 1.08997 * 109.47433 * 299.99567 * 1 2 3 32 32 H 1.09003 * 109.47418 * 60.00583 * 1 2 3 33 33 H 1.09005 * 109.46771 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99908 * 95.00949 * 4 2 1 35 35 H 0.96994 * 120.00653 * 179.97438 * 8 7 5 36 36 H 1.08994 * 110.71779 * 271.93545 * 15 13 2 37 37 H 1.09002 * 110.72390 * 35.03721 * 15 13 2 38 38 H 1.09001 * 109.88464 * 97.22089 * 16 15 13 39 39 H 1.09003 * 109.88060 * 218.23375 * 16 15 13 40 40 H 1.07993 * 119.54208 * 359.97438 * 21 20 18 41 41 H 1.08003 * 119.94019 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.11589 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.04980 * 179.97438 * 26 25 24 44 44 H 1.07995 * 120.92471 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.29878 * 0.02562 * 29 20 18 46 46 H 1.08995 * 110.34970 * 265.24399 * 30 17 16 47 47 H 1.09003 * 110.40226 * 142.91204 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1544 -0.0060 2.3743 6 1 1.9015 1.0428 2.4218 7 6 2.6176 -0.6602 3.5076 8 7 2.7480 -0.0025 4.6401 9 14 3.0559 -2.4742 3.4254 10 1 4.4873 -2.6215 3.0585 11 1 2.8173 -3.1017 4.7500 12 1 2.2116 -3.1416 2.4022 13 6 2.0400 -0.7213 -1.2492 14 1 1.6998 -1.7566 -1.2664 15 6 1.6091 0.0272 -2.5383 16 6 2.7009 -0.3746 -3.5524 17 7 3.8815 -0.7902 -2.7811 18 6 5.0434 -1.2330 -3.3009 19 8 5.9890 -1.4588 -2.5710 20 6 5.1680 -1.4440 -4.7582 21 6 6.3177 -2.0644 -5.2788 22 6 6.4555 -2.2698 -6.6132 23 6 5.4408 -1.8615 -7.4991 24 7 5.5612 -2.0571 -8.8157 25 6 4.6226 -1.6815 -9.6506 26 6 3.4553 -1.0608 -9.2113 27 6 3.2671 -0.8301 -7.8783 28 6 4.2775 -1.2361 -6.9842 29 6 4.1491 -1.0344 -5.6029 30 6 3.5842 -0.6426 -1.3442 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6317 1.1525 35 1 3.0713 -0.4597 5.4321 36 1 0.6289 -0.3128 -2.8721 37 1 1.6075 1.1051 -2.3762 38 1 2.3491 -1.2032 -4.1670 39 1 2.9499 0.4769 -4.1857 40 1 7.1018 -2.3818 -4.6075 41 1 7.3450 -2.7482 -6.9959 42 1 4.7580 -1.8580 -10.7075 43 1 2.7003 -0.7625 -9.9236 44 1 2.3688 -0.3499 -7.5196 45 1 3.2651 -0.5617 -5.2011 46 1 3.9380 0.3223 -0.9811 47 1 4.0409 -1.4532 -0.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325435701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:43 Heat of formation + Delta-G solvation = 61.081662 kcal Electronic energy + Delta-G solvation = -28635.573847 eV Core-core repulsion = 24784.454775 eV Total energy + Delta-G solvation = -3851.119072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.38037 -40.19448 -38.14244 -36.91222 -35.55984 -33.96880 -32.61895 -31.26945 -30.84987 -30.54985 -29.06431 -28.31600 -25.51502 -24.35733 -23.92087 -23.34456 -22.44914 -21.38892 -20.22228 -19.93637 -18.72926 -17.76625 -17.42460 -17.20838 -16.42890 -16.16645 -15.54761 -15.05437 -14.80908 -14.67981 -14.46903 -14.26616 -14.03837 -13.90017 -13.59801 -13.51367 -13.15728 -12.98612 -12.75825 -12.62047 -12.32232 -12.23902 -11.94435 -11.87819 -11.78140 -11.33969 -11.03743 -11.00778 -10.91320 -10.68350 -10.62677 -10.29853 -10.09231 -9.96012 -9.82186 -9.58831 -9.20537 -8.95155 -8.72527 -8.67362 -7.29654 -5.77497 -3.13598 -0.16875 0.31060 1.50964 2.13995 2.81164 3.08332 3.38596 3.42109 3.47526 3.74099 3.84448 4.08424 4.18087 4.28437 4.35825 4.45582 4.58269 4.59636 4.67199 4.73217 4.79627 4.90357 5.03023 5.06262 5.14936 5.33625 5.38605 5.44621 5.50578 5.51503 5.61508 5.64405 5.69563 5.74692 5.84404 5.86201 5.93626 6.00861 6.07114 6.10293 6.19133 6.24199 6.32789 6.39121 6.43270 6.72264 6.93789 7.38906 7.47451 7.97305 8.03835 8.41196 9.19143 9.91923 10.10584 11.40709 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.002492 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.326431 B =11233.679487 C =12261.709065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.749 5.749 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.081 0.919 15 C -0.126 4.126 16 C 0.087 3.913 17 N -0.611 5.611 18 C 0.567 3.433 19 O -0.529 6.529 20 C -0.118 4.118 21 C -0.052 4.052 22 C -0.102 4.102 23 C 0.141 3.859 24 N -0.478 5.478 25 C 0.137 3.863 26 C -0.181 4.181 27 C -0.048 4.048 28 C -0.113 4.113 29 C -0.095 4.095 30 C 0.118 3.882 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.171 0.829 46 H 0.079 0.921 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 -1.414 -30.893 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.080 3.920 3 H 0.077 0.923 4 N -0.391 5.391 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.100 0.900 15 C -0.164 4.164 16 C -0.035 4.035 17 N -0.345 5.345 18 C 0.356 3.644 19 O -0.407 6.407 20 C -0.121 4.121 21 C -0.072 4.072 22 C -0.120 4.120 23 C 0.020 3.980 24 N -0.186 5.186 25 C -0.035 4.035 26 C -0.201 4.201 27 C -0.074 4.074 28 C -0.115 4.115 29 C -0.113 4.113 30 C -0.004 4.004 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.188 0.812 46 H 0.097 0.903 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.374 -1.803 -30.521 30.577 hybrid contribution -0.507 -0.944 0.291 1.111 sum -0.881 -2.748 -30.230 30.367 Atomic orbital electron populations 1.22414 0.98534 1.00926 1.00565 1.20124 0.92123 0.95463 0.84268 0.92326 1.42790 1.79810 1.09320 1.07226 1.19022 1.37139 0.95376 0.85731 0.89186 1.24655 1.01318 0.97396 0.95590 1.69688 1.52478 1.35550 1.00352 0.86605 0.78637 0.86835 0.76775 1.20930 1.21794 1.20377 1.22739 0.93848 1.00633 0.95450 0.90027 1.22753 0.97587 1.01728 0.94355 1.22567 0.86506 0.99179 0.95292 1.48459 1.12862 1.64235 1.08908 1.17875 0.81667 0.77558 0.87304 1.90823 1.37043 1.51639 1.61174 1.19979 0.96219 1.02766 0.93147 1.20949 0.96431 0.94667 0.95158 1.20717 0.98672 1.00810 0.91835 1.19060 0.93102 0.95421 0.90462 1.68076 1.29927 1.18025 1.02586 1.23049 0.88853 0.91782 0.99836 1.21908 0.99751 1.01790 0.96672 1.21557 0.97542 0.95170 0.93131 1.18828 0.96110 1.01944 0.94586 1.23054 0.99758 0.96692 0.91844 1.22354 0.95470 1.03325 0.79209 0.92231 0.94053 0.93618 0.80671 0.93052 0.89673 0.89815 0.90556 0.90510 0.83858 0.84090 0.82268 0.84261 0.84035 0.81212 0.90320 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.31 37.16 0.35 -2.19 16 2 C 0.19 3.24 2.40 -67.93 -0.16 3.08 16 3 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 4 N -0.75 -16.71 4.70 -53.43 -0.25 -16.96 16 5 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 6 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 9 Si 0.88 22.19 27.73 -169.99 -4.71 17.48 16 10 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 13 C -0.11 -1.44 2.64 -88.47 -0.23 -1.67 16 14 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.13 -1.16 5.44 -24.89 -0.14 -1.30 16 16 C 0.09 0.76 4.87 -3.06 -0.01 0.75 16 17 N -0.61 -8.05 3.33 -177.36 -0.59 -8.64 16 18 C 0.57 8.41 7.80 -12.37 -0.10 8.32 16 19 O -0.53 -9.95 16.64 5.30 0.09 -9.86 16 20 C -0.12 -1.41 5.87 -104.98 -0.62 -2.02 16 21 C -0.05 -0.59 9.49 -39.58 -0.38 -0.96 16 22 C -0.10 -1.06 9.95 -39.54 -0.39 -1.45 16 23 C 0.14 1.51 6.61 -84.78 -0.56 0.95 16 24 N -0.48 -4.87 10.33 -10.92 -0.11 -4.99 16 25 C 0.14 0.96 11.15 -17.45 -0.19 0.77 16 26 C -0.18 -1.01 10.03 -39.78 -0.40 -1.41 16 27 C -0.05 -0.31 9.89 -39.18 -0.39 -0.70 16 28 C -0.11 -1.05 5.74 -106.82 -0.61 -1.66 16 29 C -0.10 -0.89 8.35 -38.74 -0.32 -1.21 16 30 C 0.12 1.82 6.14 -2.51 -0.02 1.80 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.50 7.38 -51.93 -0.38 0.11 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.36 8.09 5.66 -40.82 -0.23 7.85 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 38 H 0.08 0.55 6.65 -51.93 -0.35 0.20 16 39 H 0.08 0.53 6.81 -51.93 -0.35 0.17 16 40 H 0.14 1.61 7.63 -52.49 -0.40 1.21 16 41 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 44 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 45 H 0.17 1.19 2.71 -59.88 -0.16 1.03 16 46 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 47 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -35.34 379.23 -10.04 -45.38 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.52 Total: 5.83 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -4.43 Total: -5.61 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.18 Total: -58.95 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.34 -10.04 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325435701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.465 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds