Wall clock time and date at job start Sat Apr 11 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46933 * 2 1 4 4 N 1.46497 * 109.47047 * 119.99978 * 2 1 3 5 5 C 1.36940 * 119.99807 * 274.72337 * 4 2 1 6 6 H 1.07998 * 120.00232 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00069 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00486 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99881 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47254 * 89.99952 * 9 7 5 11 11 H 1.48502 * 109.47164 * 210.00343 * 9 7 5 12 12 H 1.48499 * 109.47319 * 330.00220 * 9 7 5 13 13 C 1.53000 * 109.47158 * 239.99858 * 2 1 3 14 14 H 1.08997 * 110.89073 * 299.29735 * 13 2 1 15 15 C 1.55163 * 111.00022 * 63.17895 * 13 2 1 16 16 C 1.54323 * 102.93878 * 153.57524 * 15 13 2 17 17 N 1.47025 * 107.27378 * 337.80255 * 16 15 13 18 18 C 1.34773 * 125.64863 * 178.97096 * 17 16 15 19 19 O 1.21569 * 119.99760 * 174.68025 * 18 17 16 20 20 C 1.47769 * 120.00147 * 354.68616 * 18 17 16 21 21 C 1.40635 * 119.80275 * 188.07462 * 20 18 17 22 22 C 1.35705 * 120.91843 * 179.97438 * 21 20 18 23 23 C 1.40760 * 120.11673 * 359.97438 * 22 21 20 24 24 N 1.33640 * 120.84156 * 180.02562 * 23 22 21 25 25 C 1.31121 * 121.39379 * 179.97438 * 24 23 22 26 26 C 1.39315 * 121.77451 * 0.02562 * 25 24 23 27 27 C 1.36578 * 119.90072 * 359.97438 * 26 25 24 28 28 C 1.40895 * 118.15450 * 359.97438 * 27 26 25 29 29 C 1.38542 * 119.80533 * 7.80428 * 20 18 17 30 30 C 1.47466 * 108.71911 * 358.97818 * 17 16 15 31 31 H 1.08997 * 109.47433 * 299.99567 * 1 2 3 32 32 H 1.09003 * 109.47418 * 60.00583 * 1 2 3 33 33 H 1.09005 * 109.46771 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99908 * 95.00949 * 4 2 1 35 35 H 0.96994 * 120.00653 * 179.97438 * 8 7 5 36 36 H 1.08994 * 110.71779 * 271.93545 * 15 13 2 37 37 H 1.09002 * 110.72390 * 35.03721 * 15 13 2 38 38 H 1.09001 * 109.88464 * 97.22089 * 16 15 13 39 39 H 1.09003 * 109.88060 * 218.23375 * 16 15 13 40 40 H 1.07993 * 119.54208 * 359.97438 * 21 20 18 41 41 H 1.08003 * 119.94019 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.11589 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.04980 * 179.97438 * 26 25 24 44 44 H 1.07995 * 120.92471 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.29878 * 0.02562 * 29 20 18 46 46 H 1.08995 * 110.34970 * 265.24399 * 30 17 16 47 47 H 1.09003 * 110.40226 * 142.91204 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1544 -0.0060 2.3743 6 1 1.9015 1.0428 2.4218 7 6 2.6176 -0.6602 3.5076 8 7 2.7480 -0.0025 4.6401 9 14 3.0559 -2.4742 3.4254 10 1 4.4873 -2.6215 3.0585 11 1 2.8173 -3.1017 4.7500 12 1 2.2116 -3.1416 2.4022 13 6 2.0400 -0.7213 -1.2492 14 1 1.6998 -1.7566 -1.2664 15 6 1.6091 0.0272 -2.5383 16 6 2.7009 -0.3746 -3.5524 17 7 3.8815 -0.7902 -2.7811 18 6 5.0434 -1.2330 -3.3009 19 8 5.9890 -1.4588 -2.5710 20 6 5.1680 -1.4440 -4.7582 21 6 6.3177 -2.0644 -5.2788 22 6 6.4555 -2.2698 -6.6132 23 6 5.4408 -1.8615 -7.4991 24 7 5.5612 -2.0571 -8.8157 25 6 4.6226 -1.6815 -9.6506 26 6 3.4553 -1.0608 -9.2113 27 6 3.2671 -0.8301 -7.8783 28 6 4.2775 -1.2361 -6.9842 29 6 4.1491 -1.0344 -5.6029 30 6 3.5842 -0.6426 -1.3442 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6317 1.1525 35 1 3.0713 -0.4597 5.4321 36 1 0.6289 -0.3128 -2.8721 37 1 1.6075 1.1051 -2.3762 38 1 2.3491 -1.2032 -4.1670 39 1 2.9499 0.4769 -4.1857 40 1 7.1018 -2.3818 -4.6075 41 1 7.3450 -2.7482 -6.9959 42 1 4.7580 -1.8580 -10.7075 43 1 2.7003 -0.7625 -9.9236 44 1 2.3688 -0.3499 -7.5196 45 1 3.2651 -0.5617 -5.2011 46 1 3.9380 0.3223 -0.9811 47 1 4.0409 -1.4532 -0.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325435701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:42 Heat of formation + Delta-G solvation = 37.227027 kcal Electronic energy + Delta-G solvation = -28636.608261 eV Core-core repulsion = 24784.454775 eV Total energy + Delta-G solvation = -3852.153486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.12265 -41.09827 -39.25827 -37.72573 -37.03335 -34.71332 -34.25174 -32.62226 -31.66570 -31.39205 -30.41681 -29.41012 -26.31798 -25.74510 -24.95001 -24.15414 -23.42160 -22.51912 -21.31651 -21.15254 -19.71382 -19.30395 -18.39131 -17.92730 -17.31520 -17.16853 -16.66145 -16.37988 -15.94724 -15.59505 -15.40015 -15.31591 -15.06841 -14.95379 -14.64671 -14.40629 -14.24555 -14.10170 -13.99763 -13.81501 -13.63011 -13.26951 -13.25554 -12.93093 -12.71911 -12.61445 -12.40279 -12.22719 -12.10268 -11.89031 -11.70548 -11.66550 -11.57780 -11.35524 -11.15835 -10.98764 -10.43066 -9.95994 -9.70582 -9.36920 -9.29535 -8.01881 -5.32925 -0.81939 -0.34622 0.87847 1.33988 1.34497 1.38588 1.43485 1.79074 2.21257 2.47096 3.07286 3.17729 3.30188 3.33303 3.44208 3.50575 3.67443 3.74447 3.80820 3.95548 4.00242 4.03647 4.08425 4.22410 4.31773 4.34955 4.46080 4.54476 4.60496 4.62923 4.71605 4.81283 4.83516 4.84780 4.92833 4.95584 5.01325 5.08920 5.10465 5.20107 5.23868 5.25035 5.32069 5.41967 5.47728 5.65047 5.77234 5.80488 6.23150 6.37854 6.90781 6.95807 7.10018 7.88236 8.03689 9.19913 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.002492 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.326431 B =11233.679487 C =12261.709065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.755 5.755 5 C -0.216 4.216 6 H 0.061 0.939 7 C -0.065 4.065 8 N -0.985 5.985 9 Si 0.945 3.055 10 H -0.290 1.290 11 H -0.297 1.297 12 H -0.250 1.250 13 C -0.097 4.097 14 H 0.088 0.912 15 C -0.113 4.113 16 C 0.077 3.923 17 N -0.609 5.609 18 C 0.561 3.439 19 O -0.589 6.589 20 C -0.145 4.145 21 C -0.066 4.066 22 C -0.109 4.109 23 C 0.123 3.877 24 N -0.516 5.516 25 C 0.138 3.862 26 C -0.173 4.173 27 C -0.044 4.044 28 C -0.129 4.129 29 C -0.068 4.068 30 C 0.117 3.883 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.361 0.639 35 H 0.255 0.745 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.189 0.811 43 H 0.180 0.820 44 H 0.182 0.818 45 H 0.200 0.800 46 H 0.057 0.943 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 -1.417 -36.019 36.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.074 3.926 3 H 0.065 0.935 4 N -0.398 5.398 5 C -0.347 4.347 6 H 0.079 0.921 7 C -0.257 4.257 8 N -0.636 5.636 9 Si 0.773 3.227 10 H -0.218 1.218 11 H -0.224 1.224 12 H -0.174 1.174 13 C -0.116 4.116 14 H 0.106 0.894 15 C -0.151 4.151 16 C -0.043 4.043 17 N -0.341 5.341 18 C 0.352 3.648 19 O -0.471 6.471 20 C -0.148 4.148 21 C -0.087 4.087 22 C -0.128 4.128 23 C 0.002 3.998 24 N -0.225 5.225 25 C -0.034 4.034 26 C -0.193 4.193 27 C -0.069 4.069 28 C -0.131 4.131 29 C -0.086 4.086 30 C -0.006 4.006 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.194 0.806 35 H 0.064 0.936 36 H 0.141 0.859 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.162 0.838 42 H 0.206 0.794 43 H 0.197 0.803 44 H 0.199 0.801 45 H 0.216 0.784 46 H 0.075 0.925 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.998 -1.796 -35.745 36.012 hybrid contribution 0.539 -0.817 1.624 1.896 sum -3.459 -2.613 -34.121 34.395 Atomic orbital electron populations 1.22258 0.96272 1.01486 1.01339 1.20421 0.93534 0.94882 0.83782 0.93456 1.42888 1.80074 1.09386 1.07422 1.19015 1.34071 0.94300 0.87309 0.92082 1.25394 1.02933 1.01814 0.95523 1.69856 1.55175 1.37373 1.01204 0.85558 0.78131 0.81985 0.77003 1.21752 1.22372 1.17435 1.22567 0.91885 1.01263 0.95936 0.89393 1.22814 0.99313 1.01719 0.91276 1.22987 0.84487 1.01408 0.95403 1.48495 1.13770 1.63513 1.08293 1.18420 0.81301 0.76700 0.88387 1.90778 1.39184 1.54389 1.62736 1.19747 0.97866 1.05739 0.91480 1.20859 0.96560 0.95799 0.95455 1.20769 0.99349 1.01151 0.91520 1.19249 0.93723 0.95894 0.90980 1.68090 1.31827 1.19993 1.02626 1.23748 0.88656 0.90097 1.00863 1.22364 0.99642 1.00027 0.97231 1.22037 0.97736 0.94176 0.92963 1.19071 0.96646 1.02372 0.94978 1.23300 0.99211 0.94530 0.91567 1.22154 0.97045 1.00717 0.80691 0.95259 0.89477 0.93116 0.80608 0.93595 0.85930 0.88989 0.87608 0.87476 0.85415 0.83750 0.79434 0.80310 0.80084 0.78404 0.92473 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.31 71.98 0.67 -3.64 16 2 C 0.18 5.95 2.40 44.99 0.11 6.06 16 3 H 0.05 1.66 8.07 -2.39 -0.02 1.64 16 4 N -0.75 -33.75 4.70 -322.95 -1.52 -35.26 16 5 C -0.22 -12.09 10.41 84.03 0.87 -11.22 16 6 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 7 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.98 -64.08 13.97 21.65 0.30 -63.78 16 9 Si 0.94 47.17 27.73 68.60 1.90 49.07 16 10 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 11 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 12 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 13 C -0.10 -2.38 2.64 -9.40 -0.02 -2.40 16 14 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.11 -1.50 5.44 31.78 0.17 -1.32 16 16 C 0.08 1.00 4.87 86.73 0.42 1.42 16 17 N -0.61 -15.43 3.33 -833.31 -2.77 -18.20 16 18 C 0.56 17.14 7.80 86.76 0.68 17.82 16 19 O -0.59 -24.00 16.64 -3.93 -0.07 -24.07 16 20 C -0.15 -3.45 5.87 -20.10 -0.12 -3.57 16 21 C -0.07 -1.61 9.49 22.27 0.21 -1.40 16 22 C -0.11 -2.37 9.95 22.30 0.22 -2.15 16 23 C 0.12 2.48 6.61 40.36 0.27 2.74 16 24 N -0.52 -9.61 10.33 -188.46 -1.95 -11.55 16 25 C 0.14 1.42 11.15 85.06 0.95 2.37 16 26 C -0.17 -0.96 10.03 22.14 0.22 -0.73 16 27 C -0.04 -0.32 9.89 22.53 0.22 -0.09 16 28 C -0.13 -1.96 5.74 -21.29 -0.12 -2.08 16 29 C -0.07 -1.06 8.35 22.82 0.19 -0.87 16 30 C 0.12 3.64 6.14 86.85 0.53 4.17 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.65 7.38 -2.39 -0.02 1.64 16 33 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.36 16.02 5.66 -92.71 -0.52 15.50 16 35 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 36 H 0.12 0.84 8.12 -2.39 -0.02 0.82 16 37 H 0.09 1.14 8.04 -2.39 -0.02 1.12 16 38 H 0.11 0.84 6.65 -2.39 -0.02 0.83 16 39 H 0.11 0.83 6.81 -2.39 -0.02 0.81 16 40 H 0.13 3.34 7.63 -2.91 -0.02 3.31 16 41 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 42 H 0.19 0.65 8.06 -2.91 -0.02 0.62 16 43 H 0.18 -0.39 8.06 -2.91 -0.02 -0.42 16 44 H 0.18 -0.15 8.06 -2.91 -0.02 -0.18 16 45 H 0.20 1.69 2.71 -9.86 -0.03 1.67 16 46 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 47 H 0.04 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -86.13 379.23 2.24 -83.89 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.40 Total: 18.26 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.94 Total: 1.65 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -5.94 Total: -128.80 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.07 Total: -24.07 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.90 Total: 49.07 kcal Total: -86.13 2.24 -83.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325435701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.117 kcal (2) G-P(sol) polarization free energy of solvation -86.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds