Wall clock time and date at job start Sat Apr 11 2020 05:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47264 * 2 1 4 4 C 1.52999 * 109.46725 * 120.00085 * 2 1 3 5 5 N 1.46495 * 109.46918 * 175.00045 * 4 2 1 6 6 C 1.34785 * 120.00110 * 179.97438 * 5 4 2 7 7 O 1.21568 * 119.99559 * 0.02562 * 6 5 4 8 8 C 1.47708 * 120.00007 * 179.97438 * 6 5 4 9 9 C 1.40194 * 120.45567 * 180.02562 * 8 6 5 10 10 C 1.38049 * 118.37840 * 180.02562 * 9 8 6 11 11 C 1.39504 * 119.21685 * 0.02562 * 10 9 8 12 12 C 1.48232 * 119.56915 * 179.97438 * 11 10 9 13 13 C 1.39423 * 120.12784 * 179.97438 * 12 11 10 14 14 C 1.37990 * 119.86856 * 179.97438 * 13 12 11 15 15 C 1.38341 * 120.13026 * 0.02562 * 14 13 12 16 16 C 1.38346 * 120.26100 * 359.97438 * 15 14 13 17 17 C 1.37992 * 120.12615 * 0.02562 * 16 15 14 18 18 N 1.32766 * 120.86144 * 0.24751 * 11 10 9 19 19 C 1.31524 * 121.76488 * 359.47685 * 18 11 10 20 20 N 1.46499 * 109.46858 * 239.99344 * 2 1 3 21 21 C 1.46492 * 120.00483 * 300.00346 * 20 2 1 22 22 C 1.36940 * 119.99629 * 120.00510 * 20 2 1 23 23 H 1.08008 * 120.00103 * 20.37329 * 22 20 2 24 24 C 1.38813 * 120.00277 * 200.37494 * 22 20 2 25 25 N 1.31621 * 119.99667 * 14.98901 * 24 22 20 26 26 Si 1.86798 * 120.00219 * 194.98859 * 24 22 20 27 27 H 1.48503 * 109.46754 * 84.97219 * 26 24 22 28 28 H 1.48503 * 109.47190 * 204.96635 * 26 24 22 29 29 H 1.48494 * 109.47247 * 324.96763 * 26 24 22 30 30 H 1.09004 * 109.46967 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47281 * 300.00245 * 1 2 3 32 32 H 1.08998 * 109.46933 * 60.00512 * 1 2 3 33 33 H 1.08996 * 109.47659 * 54.99537 * 4 2 1 34 34 H 1.09006 * 109.47087 * 294.99326 * 4 2 1 35 35 H 0.97000 * 120.00597 * 359.97438 * 5 4 2 36 36 H 1.07996 * 120.80975 * 0.02562 * 9 8 6 37 37 H 1.08000 * 120.38392 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.06755 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.93821 * 179.72472 * 14 13 12 40 40 H 1.07999 * 119.87106 * 179.97438 * 15 14 13 41 41 H 1.07996 * 119.93540 * 180.02562 * 16 15 14 42 42 H 1.07997 * 120.06206 * 180.02562 * 17 16 15 43 43 H 1.07995 * 119.65003 * 180.28586 * 19 18 11 44 44 H 1.09003 * 109.47417 * 95.10914 * 21 20 2 45 45 H 1.09003 * 109.47310 * 215.11252 * 21 20 2 46 46 H 1.08997 * 109.47520 * 335.10467 * 21 20 2 47 47 H 0.97003 * 119.99856 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1906 6 6 4.1730 -1.4284 2.1913 7 8 3.5684 -1.8844 3.1423 8 6 5.6450 -1.5349 2.1319 9 6 6.3547 -2.1595 3.1671 10 6 7.7295 -2.2347 3.0679 11 6 8.3623 -1.6907 1.9500 12 6 9.8383 -1.7666 1.8356 13 6 10.4827 -1.2272 0.7231 14 6 11.8570 -1.3004 0.6225 15 6 12.5951 -1.9080 1.6223 16 6 11.9612 -2.4450 2.7286 17 6 10.5875 -2.3778 2.8402 18 7 7.6603 -1.1010 0.9897 19 6 6.3491 -1.0137 1.0446 20 7 2.0183 -0.6908 -1.1961 21 6 1.6644 -2.0932 -1.4279 22 6 2.8057 -0.0253 -2.0975 23 1 3.3356 0.8664 -1.7967 24 6 2.9227 -0.4968 -3.3979 25 7 2.0696 -1.3897 -3.8533 26 14 4.2908 0.1358 -4.5012 27 1 5.5273 -0.6492 -4.2561 28 1 3.8867 -0.0084 -5.9230 29 1 4.5459 1.5677 -4.2019 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.6053 -1.7198 1.2953 34 1 1.7516 -0.1583 2.1370 35 1 3.9824 -0.4629 0.4317 36 1 5.8383 -2.5717 4.0214 37 1 8.3083 -2.7092 3.8465 38 1 9.9075 -0.7522 -0.0579 39 1 12.3569 -0.8869 -0.2409 40 1 13.6705 -1.9633 1.5390 41 1 12.5427 -2.9178 3.5062 42 1 10.0937 -2.7970 3.7044 43 1 5.8118 -0.5306 0.2420 44 1 0.7888 -2.1449 -2.0751 45 1 2.5000 -2.6047 -1.9056 46 1 1.4410 -2.5738 -0.4754 47 1 2.1516 -1.7195 -4.7619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329586615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:14 Heat of formation + Delta-G solvation = 49.174255 kcal Electronic energy + Delta-G solvation = -28376.918776 eV Core-core repulsion = 24525.283361 eV Total energy + Delta-G solvation = -3851.635416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.73369 -39.39970 -38.48868 -36.74679 -33.95845 -33.14519 -32.66262 -31.99739 -31.09942 -29.82287 -29.21570 -26.13098 -26.05991 -24.47571 -24.00905 -23.04857 -22.23570 -21.70574 -20.26552 -19.44254 -18.06049 -17.25544 -16.92945 -16.72421 -16.28933 -15.43116 -15.28617 -14.85981 -14.74341 -14.72328 -14.52232 -14.18877 -13.83545 -13.72698 -13.56402 -13.15842 -12.88026 -12.76015 -12.73955 -12.45996 -12.30404 -12.03680 -11.52616 -11.47279 -11.32322 -11.11086 -10.85758 -10.78364 -10.43145 -10.31886 -10.09514 -10.01651 -9.92085 -9.88238 -9.81734 -9.42766 -9.19536 -8.69133 -8.60408 -8.39439 -6.87095 -5.78701 -3.24291 0.14576 1.13465 1.16672 1.39071 2.98996 3.35218 3.41347 3.43021 3.47512 3.56586 3.88218 3.98008 4.38076 4.43080 4.69025 4.71565 4.73382 4.79992 4.88502 5.00752 5.13483 5.24468 5.33590 5.35614 5.37087 5.43392 5.54573 5.65862 5.75377 5.86500 5.90625 5.98766 6.07053 6.14909 6.16367 6.24599 6.27268 6.32611 6.40307 6.46760 6.70221 6.71201 6.80020 6.81751 6.97918 7.35806 7.67002 7.75214 7.75786 7.90070 8.31071 8.48676 9.16146 9.79952 10.28455 11.25609 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.003062 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.235235 B = 9141.253160 C =11318.199506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.106 3.894 5 N -0.697 5.697 6 C 0.556 3.444 7 O -0.552 6.552 8 C -0.182 4.182 9 C -0.016 4.016 10 C -0.174 4.174 11 C 0.183 3.817 12 C -0.052 4.052 13 C -0.076 4.076 14 C -0.127 4.127 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.099 4.099 18 N -0.479 5.479 19 C 0.148 3.852 20 N -0.594 5.594 21 C 0.164 3.836 22 C -0.265 4.265 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.410 0.590 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.168 0.832 44 H 0.029 0.971 45 H 0.041 0.959 46 H -0.001 1.001 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.483 -0.828 13.474 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.020 4.020 5 N -0.347 5.347 6 C 0.342 3.658 7 O -0.432 6.432 8 C -0.188 4.188 9 C -0.042 4.042 10 C -0.194 4.194 11 C 0.047 3.953 12 C -0.053 4.053 13 C -0.094 4.094 14 C -0.145 4.145 15 C -0.128 4.128 16 C -0.144 4.144 17 C -0.118 4.118 18 N -0.187 5.187 19 C -0.011 4.011 20 N -0.317 5.317 21 C 0.020 3.980 22 C -0.395 4.395 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.185 0.815 44 H 0.047 0.953 45 H 0.060 0.940 46 H 0.017 0.983 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.425 -0.865 13.207 20.325 hybrid contribution 0.341 0.023 -0.509 0.613 sum 15.765 -0.843 12.698 20.261 Atomic orbital electron populations 1.22186 0.97368 1.01422 1.00635 1.20622 0.92705 0.95532 0.86345 0.91269 1.22017 0.78960 1.01537 0.99447 1.45840 1.08665 1.57632 1.22597 1.17956 0.86210 0.78647 0.82981 1.90734 1.69649 1.48977 1.33855 1.21154 0.95133 1.04494 0.97971 1.21635 0.93195 0.92211 0.97152 1.22009 0.94903 1.02908 0.99579 1.19957 0.92980 0.92403 0.89945 1.18547 0.89859 1.00853 0.96047 1.21441 0.94328 0.96580 0.97086 1.21196 0.93968 1.00021 0.99283 1.21305 1.00028 0.97401 0.94056 1.21053 0.94220 1.00675 0.98493 1.21256 0.94063 0.98347 0.98125 1.67650 1.08110 1.15700 1.27208 1.23126 0.89394 0.93064 0.95560 1.44019 1.58249 1.08089 1.21387 1.20732 0.99835 0.83322 0.94132 1.19200 1.20079 1.09781 0.90389 0.91192 1.24967 0.98377 0.99421 0.96489 1.70092 1.35058 1.33321 1.16081 0.86346 0.82043 0.78558 0.80040 1.21265 1.21809 1.20488 0.93129 0.93928 0.92159 0.91835 0.92191 0.75271 0.83375 0.84061 0.84401 0.85615 0.85935 0.85679 0.85467 0.81457 0.95292 0.94014 0.98278 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.19 37.16 0.34 -2.35 16 2 C 0.16 2.92 2.87 -67.93 -0.19 2.73 16 3 H 0.07 1.27 7.85 -51.93 -0.41 0.86 16 4 C 0.11 1.83 4.93 -4.04 -0.02 1.81 16 5 N -0.70 -11.83 5.34 -61.29 -0.33 -12.16 16 6 C 0.56 9.48 7.77 -12.39 -0.10 9.39 16 7 O -0.55 -10.73 16.41 5.31 0.09 -10.65 16 8 C -0.18 -2.71 5.89 -104.78 -0.62 -3.32 16 9 C -0.02 -0.20 9.70 -38.92 -0.38 -0.58 16 10 C -0.17 -1.96 9.44 -39.18 -0.37 -2.33 16 11 C 0.18 2.36 6.73 -82.88 -0.56 1.80 16 12 C -0.05 -0.60 5.88 -104.91 -0.62 -1.21 16 13 C -0.08 -0.85 9.57 -39.23 -0.38 -1.23 16 14 C -0.13 -1.16 10.03 -39.63 -0.40 -1.55 16 15 C -0.11 -0.87 10.04 -39.50 -0.40 -1.27 16 16 C -0.13 -0.99 10.03 -39.63 -0.40 -1.39 16 17 C -0.10 -0.89 9.42 -39.23 -0.37 -1.26 16 18 N -0.48 -7.03 9.40 -9.46 -0.09 -7.12 16 19 C 0.15 2.18 10.70 -17.17 -0.18 1.99 16 20 N -0.59 -13.49 2.29 -173.49 -0.40 -13.89 16 21 C 0.16 3.88 8.00 59.84 0.48 4.36 16 22 C -0.27 -6.62 9.34 -15.06 -0.14 -6.76 16 23 H 0.07 1.67 7.81 -52.48 -0.41 1.26 16 24 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 25 N -0.90 -25.27 10.67 55.49 0.59 -24.67 16 26 Si 0.90 20.89 29.58 -169.99 -5.03 15.87 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H 0.05 0.88 7.67 -51.93 -0.40 0.48 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.18 6.86 -51.93 -0.36 0.82 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.41 6.94 5.94 -40.82 -0.24 6.70 16 36 H 0.15 1.73 7.73 -52.49 -0.41 1.33 16 37 H 0.14 1.12 6.17 -52.49 -0.32 0.79 16 38 H 0.14 1.63 7.53 -52.49 -0.40 1.24 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.87 6.17 -52.49 -0.32 0.55 16 43 H 0.17 2.38 6.41 -52.49 -0.34 2.04 16 44 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 45 H 0.04 1.07 7.21 -51.93 -0.37 0.70 16 46 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -30.73 387.82 -10.07 -40.80 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.37 Total: 7.07 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -4.38 Total: -1.09 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.22 Total: -57.84 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.73 -10.07 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329586615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.973 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds