Wall clock time and date at job start Sat Apr 11 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47264 * 2 1 4 4 C 1.52999 * 109.46725 * 120.00085 * 2 1 3 5 5 N 1.46495 * 109.46918 * 175.00045 * 4 2 1 6 6 C 1.34785 * 120.00110 * 179.97438 * 5 4 2 7 7 O 1.21568 * 119.99559 * 0.02562 * 6 5 4 8 8 C 1.47708 * 120.00007 * 179.97438 * 6 5 4 9 9 C 1.40194 * 120.45567 * 180.02562 * 8 6 5 10 10 C 1.38049 * 118.37840 * 180.02562 * 9 8 6 11 11 C 1.39504 * 119.21685 * 0.02562 * 10 9 8 12 12 C 1.48232 * 119.56915 * 179.97438 * 11 10 9 13 13 C 1.39423 * 120.12784 * 179.97438 * 12 11 10 14 14 C 1.37990 * 119.86856 * 179.97438 * 13 12 11 15 15 C 1.38341 * 120.13026 * 0.02562 * 14 13 12 16 16 C 1.38346 * 120.26100 * 359.97438 * 15 14 13 17 17 C 1.37992 * 120.12615 * 0.02562 * 16 15 14 18 18 N 1.32766 * 120.86144 * 0.24751 * 11 10 9 19 19 C 1.31524 * 121.76488 * 359.47685 * 18 11 10 20 20 N 1.46499 * 109.46858 * 239.99344 * 2 1 3 21 21 C 1.46492 * 120.00483 * 300.00346 * 20 2 1 22 22 C 1.36940 * 119.99629 * 120.00510 * 20 2 1 23 23 H 1.08008 * 120.00103 * 20.37329 * 22 20 2 24 24 C 1.38813 * 120.00277 * 200.37494 * 22 20 2 25 25 N 1.31621 * 119.99667 * 14.98901 * 24 22 20 26 26 Si 1.86798 * 120.00219 * 194.98859 * 24 22 20 27 27 H 1.48503 * 109.46754 * 84.97219 * 26 24 22 28 28 H 1.48503 * 109.47190 * 204.96635 * 26 24 22 29 29 H 1.48494 * 109.47247 * 324.96763 * 26 24 22 30 30 H 1.09004 * 109.46967 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47281 * 300.00245 * 1 2 3 32 32 H 1.08998 * 109.46933 * 60.00512 * 1 2 3 33 33 H 1.08996 * 109.47659 * 54.99537 * 4 2 1 34 34 H 1.09006 * 109.47087 * 294.99326 * 4 2 1 35 35 H 0.97000 * 120.00597 * 359.97438 * 5 4 2 36 36 H 1.07996 * 120.80975 * 0.02562 * 9 8 6 37 37 H 1.08000 * 120.38392 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.06755 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.93821 * 179.72472 * 14 13 12 40 40 H 1.07999 * 119.87106 * 179.97438 * 15 14 13 41 41 H 1.07996 * 119.93540 * 180.02562 * 16 15 14 42 42 H 1.07997 * 120.06206 * 180.02562 * 17 16 15 43 43 H 1.07995 * 119.65003 * 180.28586 * 19 18 11 44 44 H 1.09003 * 109.47417 * 95.10914 * 21 20 2 45 45 H 1.09003 * 109.47310 * 215.11252 * 21 20 2 46 46 H 1.08997 * 109.47520 * 335.10467 * 21 20 2 47 47 H 0.97003 * 119.99856 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1906 6 6 4.1730 -1.4284 2.1913 7 8 3.5684 -1.8844 3.1423 8 6 5.6450 -1.5349 2.1319 9 6 6.3547 -2.1595 3.1671 10 6 7.7295 -2.2347 3.0679 11 6 8.3623 -1.6907 1.9500 12 6 9.8383 -1.7666 1.8356 13 6 10.4827 -1.2272 0.7231 14 6 11.8570 -1.3004 0.6225 15 6 12.5951 -1.9080 1.6223 16 6 11.9612 -2.4450 2.7286 17 6 10.5875 -2.3778 2.8402 18 7 7.6603 -1.1010 0.9897 19 6 6.3491 -1.0137 1.0446 20 7 2.0183 -0.6908 -1.1961 21 6 1.6644 -2.0932 -1.4279 22 6 2.8057 -0.0253 -2.0975 23 1 3.3356 0.8664 -1.7967 24 6 2.9227 -0.4968 -3.3979 25 7 2.0696 -1.3897 -3.8533 26 14 4.2908 0.1358 -4.5012 27 1 5.5273 -0.6492 -4.2561 28 1 3.8867 -0.0084 -5.9230 29 1 4.5459 1.5677 -4.2019 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.6053 -1.7198 1.2953 34 1 1.7516 -0.1583 2.1370 35 1 3.9824 -0.4629 0.4317 36 1 5.8383 -2.5717 4.0214 37 1 8.3083 -2.7092 3.8465 38 1 9.9075 -0.7522 -0.0579 39 1 12.3569 -0.8869 -0.2409 40 1 13.6705 -1.9633 1.5390 41 1 12.5427 -2.9178 3.5062 42 1 10.0937 -2.7970 3.7044 43 1 5.8118 -0.5306 0.2420 44 1 0.7888 -2.1449 -2.0751 45 1 2.5000 -2.6047 -1.9056 46 1 1.4410 -2.5738 -0.4754 47 1 2.1516 -1.7195 -4.7619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329586615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:13 Heat of formation + Delta-G solvation = 32.525814 kcal Electronic energy + Delta-G solvation = -28377.640707 eV Core-core repulsion = 24525.283361 eV Total energy + Delta-G solvation = -3852.357346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.78696 -40.49485 -39.43728 -38.38330 -35.52939 -34.24118 -33.74843 -33.44396 -31.79052 -31.26405 -30.47869 -28.02715 -27.39073 -25.55123 -25.05484 -24.76107 -23.03921 -22.55553 -21.48836 -21.02188 -19.15858 -18.82177 -18.23152 -17.82346 -17.16374 -17.04565 -16.56006 -16.29073 -15.88015 -15.76294 -15.50532 -15.33463 -15.10547 -14.88681 -14.57525 -14.44738 -14.32218 -14.10206 -13.86959 -13.64176 -13.48128 -13.38269 -13.06989 -12.87203 -12.67274 -12.54123 -12.29057 -12.20065 -12.09699 -11.99746 -11.78115 -11.51701 -11.27897 -11.11240 -10.80121 -10.61479 -10.54631 -10.03898 -9.86990 -9.28418 -8.81066 -7.79725 -5.25228 -0.81157 0.13671 0.49153 0.55309 1.48640 1.51551 1.56843 1.81588 2.18802 2.52329 2.65016 2.95096 3.06582 3.35428 3.49317 3.61797 3.68839 3.76699 3.89704 4.00732 4.06250 4.13415 4.18609 4.31289 4.36121 4.50722 4.58359 4.60860 4.64736 4.70324 4.76190 4.83033 4.92212 5.00031 5.02842 5.04695 5.16605 5.23542 5.33516 5.38708 5.41845 5.53991 5.55780 5.58636 5.61966 5.68253 5.75023 6.04403 6.33785 6.52543 6.74503 7.12471 7.17902 7.89173 8.33747 9.23822 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.003062 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.235235 B = 9141.253160 C =11318.199506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.155 3.845 3 H 0.076 0.924 4 C 0.115 3.885 5 N -0.699 5.699 6 C 0.559 3.441 7 O -0.578 6.578 8 C -0.201 4.201 9 C -0.015 4.015 10 C -0.162 4.162 11 C 0.178 3.822 12 C -0.079 4.079 13 C -0.098 4.098 14 C -0.135 4.135 15 C -0.105 4.105 16 C -0.125 4.125 17 C -0.098 4.098 18 N -0.503 5.503 19 C 0.141 3.859 20 N -0.603 5.603 21 C 0.184 3.816 22 C -0.256 4.256 23 H 0.082 0.918 24 C -0.050 4.050 25 N -0.937 5.937 26 Si 0.958 3.042 27 H -0.289 1.289 28 H -0.303 1.303 29 H -0.266 1.266 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.409 0.591 36 H 0.160 0.840 37 H 0.181 0.819 38 H 0.118 0.882 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.163 0.837 44 H 0.002 0.998 45 H 0.012 0.988 46 H 0.020 0.980 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.955 -0.706 15.982 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 H 0.094 0.906 4 C -0.010 4.010 5 N -0.349 5.349 6 C 0.346 3.654 7 O -0.461 6.461 8 C -0.206 4.206 9 C -0.041 4.041 10 C -0.181 4.181 11 C 0.042 3.958 12 C -0.080 4.080 13 C -0.117 4.117 14 C -0.153 4.153 15 C -0.124 4.124 16 C -0.143 4.143 17 C -0.116 4.116 18 N -0.211 5.211 19 C -0.018 4.018 20 N -0.326 5.326 21 C 0.039 3.961 22 C -0.386 4.386 23 H 0.100 0.900 24 C -0.245 4.245 25 N -0.584 5.584 26 Si 0.787 3.213 27 H -0.216 1.216 28 H -0.230 1.230 29 H -0.191 1.191 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.247 0.753 36 H 0.178 0.822 37 H 0.198 0.802 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.175 0.825 42 H 0.169 0.831 43 H 0.180 0.820 44 H 0.020 0.980 45 H 0.031 0.969 46 H 0.038 0.962 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.899 -0.706 15.743 23.848 hybrid contribution -0.282 -0.007 -1.189 1.222 sum 17.616 -0.713 14.554 22.862 Atomic orbital electron populations 1.22071 0.95899 1.01335 1.01487 1.20807 0.93757 0.95584 0.85030 0.90573 1.21869 0.79120 1.00828 0.99188 1.45865 1.08594 1.57742 1.22698 1.18219 0.87069 0.77764 0.82299 1.90708 1.70411 1.50186 1.34752 1.21018 0.93830 1.06501 0.99220 1.21850 0.93911 0.91547 0.96780 1.22345 0.94355 1.01754 0.99683 1.20424 0.93963 0.91504 0.89875 1.18679 0.89158 1.02798 0.97334 1.21453 0.95422 0.97699 0.97160 1.21419 0.93205 1.00277 1.00420 1.21708 1.01478 0.95843 0.93330 1.21480 0.93968 0.99832 0.99030 1.21564 0.94706 0.97398 0.97966 1.67649 1.08040 1.16915 1.28542 1.23046 0.89668 0.93504 0.95616 1.44154 1.58395 1.07932 1.22134 1.20376 0.97404 0.84089 0.94213 1.19586 1.19283 1.09320 0.90376 0.90002 1.25631 1.00402 1.00383 0.98067 1.70251 1.36921 1.35310 1.15901 0.85419 0.79485 0.78610 0.77771 1.21642 1.23020 1.19059 0.93717 0.90346 0.93955 0.93055 0.90254 0.75341 0.82198 0.80201 0.86347 0.84265 0.83134 0.82540 0.83080 0.82030 0.97985 0.96908 0.96163 0.94621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.19 71.98 0.66 -4.25 16 2 C 0.16 5.64 2.87 44.99 0.13 5.77 16 3 H 0.08 2.68 7.85 -2.39 -0.02 2.66 16 4 C 0.12 3.85 4.93 86.38 0.43 4.28 16 5 N -0.70 -23.59 5.34 -466.10 -2.49 -26.08 16 6 C 0.56 18.97 7.77 86.74 0.67 19.65 16 7 O -0.58 -22.19 16.41 -3.93 -0.06 -22.25 16 8 C -0.20 -5.94 5.89 -19.96 -0.12 -6.05 16 9 C -0.01 -0.36 9.70 22.70 0.22 -0.14 16 10 C -0.16 -3.30 9.44 22.53 0.21 -3.09 16 11 C 0.18 4.46 6.73 41.97 0.28 4.74 16 12 C -0.08 -1.71 5.88 -20.05 -0.12 -1.83 16 13 C -0.10 -2.20 9.57 22.50 0.22 -1.98 16 14 C -0.14 -2.27 10.03 22.24 0.22 -2.05 16 15 C -0.11 -1.34 10.04 22.32 0.22 -1.11 16 16 C -0.13 -1.48 10.03 22.24 0.22 -1.26 16 17 C -0.10 -1.46 9.42 22.50 0.21 -1.25 16 18 N -0.50 -15.06 9.40 -183.83 -1.73 -16.79 16 19 C 0.14 4.25 10.70 85.07 0.91 5.16 16 20 N -0.60 -27.52 2.29 -702.79 -1.61 -29.13 16 21 C 0.18 8.92 8.00 127.77 1.02 9.94 16 22 C -0.26 -12.81 9.34 84.03 0.79 -12.03 16 23 H 0.08 3.85 7.81 -2.91 -0.02 3.83 16 24 C -0.05 -2.65 5.06 84.86 0.43 -2.22 16 25 N -0.94 -54.27 10.67 21.65 0.23 -54.04 16 26 Si 0.96 43.86 29.58 68.60 2.03 45.89 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 28 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 30 H 0.04 1.52 7.67 -2.38 -0.02 1.50 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.86 6.86 -2.39 -0.02 1.84 16 34 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.41 13.96 5.94 -92.71 -0.55 13.41 16 36 H 0.16 3.46 7.73 -2.91 -0.02 3.44 16 37 H 0.18 2.13 6.17 -2.91 -0.02 2.11 16 38 H 0.12 2.99 7.53 -2.91 -0.02 2.97 16 39 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.15 1.41 6.17 -2.91 -0.02 1.39 16 43 H 0.16 4.83 6.41 -2.91 -0.02 4.81 16 44 H 0.00 0.10 7.40 -2.39 -0.02 0.08 16 45 H 0.01 0.66 7.21 -2.39 -0.02 0.64 16 46 H 0.02 0.87 6.53 -2.39 -0.02 0.85 16 47 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -68.18 387.82 3.43 -64.75 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.44 Total: 25.38 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.62 Total: 12.26 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -5.60 Total: -126.03 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.06 Total: -22.25 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -68.18 3.43 -64.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329586615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.275 kcal (2) G-P(sol) polarization free energy of solvation -68.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds