Wall clock time and date at job start Sat Apr 11 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47221 * 2 1 4 4 C 1.52997 * 109.47129 * 239.99492 * 2 1 3 5 5 N 1.46504 * 109.47185 * 185.00124 * 4 2 1 6 6 C 1.34782 * 119.99802 * 179.97438 * 5 4 2 7 7 O 1.21568 * 119.99885 * 0.02562 * 6 5 4 8 8 C 1.47707 * 119.99843 * 180.02562 * 6 5 4 9 9 C 1.40195 * 120.46061 * 180.02562 * 8 6 5 10 10 C 1.38033 * 118.38367 * 180.02562 * 9 8 6 11 11 C 1.39509 * 119.21817 * 359.97438 * 10 9 8 12 12 C 1.48223 * 119.57125 * 179.97438 * 11 10 9 13 13 C 1.39437 * 120.12695 * 179.97438 * 12 11 10 14 14 C 1.37996 * 119.86654 * 179.97438 * 13 12 11 15 15 C 1.38343 * 120.13025 * 0.02562 * 14 13 12 16 16 C 1.38339 * 120.25941 * 0.02562 * 15 14 13 17 17 C 1.37984 * 120.13410 * 359.97438 * 16 15 14 18 18 N 1.32769 * 120.85906 * 0.25931 * 11 10 9 19 19 C 1.31520 * 121.76197 * 359.46920 * 18 11 10 20 20 N 1.46504 * 109.46847 * 119.99939 * 2 1 3 21 21 C 1.46497 * 120.00158 * 59.99712 * 20 2 1 22 22 C 1.36936 * 119.99932 * 239.99651 * 20 2 1 23 23 H 1.08002 * 119.99944 * 21.91121 * 22 20 2 24 24 C 1.38814 * 120.00265 * 201.90832 * 22 20 2 25 25 N 1.31615 * 119.99725 * 12.76766 * 24 22 20 26 26 Si 1.86800 * 120.00071 * 192.75988 * 24 22 20 27 27 H 1.48500 * 109.47145 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46861 * 120.00144 * 26 24 22 29 29 H 1.48496 * 109.47436 * 239.99881 * 26 24 22 30 30 H 1.08995 * 109.47442 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47094 * 300.00581 * 1 2 3 32 32 H 1.08998 * 109.46884 * 59.99928 * 1 2 3 33 33 H 1.09002 * 109.46813 * 65.00055 * 4 2 1 34 34 H 1.09003 * 109.47571 * 305.00361 * 4 2 1 35 35 H 0.96996 * 120.00161 * 0.02562 * 5 4 2 36 36 H 1.08000 * 120.80352 * 359.97438 * 9 8 6 37 37 H 1.08003 * 120.39367 * 180.02562 * 10 9 8 38 38 H 1.07999 * 120.06865 * 0.02562 * 13 12 11 39 39 H 1.07994 * 119.93435 * 179.72649 * 14 13 12 40 40 H 1.07998 * 119.86646 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.93220 * 180.02562 * 16 15 14 42 42 H 1.07998 * 120.06837 * 180.02562 * 17 16 15 43 43 H 1.08006 * 119.64931 * 180.29075 * 19 18 11 44 44 H 1.09004 * 109.47089 * 94.31397 * 21 20 2 45 45 H 1.08998 * 109.47181 * 214.30723 * 21 20 2 46 46 H 1.08992 * 109.47126 * 334.31113 * 21 20 2 47 47 H 0.96999 * 119.99843 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1730 -1.4294 -2.1906 7 8 3.5684 -1.8856 -3.1415 8 6 5.6450 -1.5360 -2.1312 9 6 6.3547 -2.1606 -3.1663 10 6 7.7293 -2.2369 -3.0665 11 6 8.3621 -1.6937 -1.9481 12 6 9.8378 -1.7717 -1.8327 13 6 10.4822 -1.2321 -0.7201 14 6 11.8563 -1.3082 -0.6178 15 6 12.5943 -1.9178 -1.6167 16 6 11.9604 -2.4539 -2.7233 17 6 10.5871 -2.3839 -2.8366 18 7 7.6592 -1.1127 -0.9831 19 6 6.3490 -1.0155 -1.0434 20 7 2.0183 -0.6906 1.1962 21 6 1.6643 -2.0931 1.4281 22 6 2.8056 -0.0252 2.0976 23 1 2.7851 1.0539 2.1392 24 6 3.6299 -0.7374 2.9579 25 7 3.8496 -2.0181 2.7489 26 14 4.4274 0.1220 4.4122 27 1 4.0234 1.5509 4.4252 28 1 3.9878 -0.5279 5.6731 29 1 5.9046 0.0258 4.2948 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -0.1584 -2.1369 34 1 1.6053 -1.7199 -1.2951 35 1 3.9824 -0.4629 -0.4315 36 1 5.8384 -2.5729 -4.0206 37 1 8.3083 -2.7107 -3.8454 38 1 9.9071 -0.7563 0.0605 39 1 12.3569 -0.8868 0.2412 40 1 13.6695 -1.9746 -1.5325 41 1 12.5417 -2.9290 -3.4997 42 1 10.0933 -2.8031 -3.7008 43 1 5.8116 -0.5317 -0.2411 44 1 2.4537 -2.7362 1.0391 45 1 1.5487 -2.2666 2.4980 46 1 0.7272 -2.3202 0.9199 47 1 4.4259 -2.5157 3.3498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329586617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:17 Heat of formation + Delta-G solvation = 33.164082 kcal Electronic energy + Delta-G solvation = -28642.826842 eV Core-core repulsion = 24790.497173 eV Total energy + Delta-G solvation = -3852.329669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.77551 -40.47497 -39.43285 -38.36486 -35.47463 -34.24406 -33.75953 -33.45605 -31.79434 -31.22742 -30.45842 -28.00327 -27.37137 -25.54824 -25.05161 -24.73265 -23.03606 -22.54934 -21.45654 -21.00303 -19.11951 -18.81906 -18.23380 -17.82937 -17.09982 -17.04568 -16.54868 -16.33661 -15.83744 -15.72828 -15.50334 -15.33014 -15.10852 -14.84619 -14.61537 -14.37329 -14.32276 -14.08158 -13.84748 -13.62918 -13.52803 -13.38674 -13.20124 -12.85648 -12.61880 -12.48874 -12.27927 -12.20474 -12.06405 -11.99965 -11.73958 -11.47517 -11.26142 -11.11257 -10.79452 -10.61421 -10.54035 -10.00561 -9.87446 -9.28347 -8.77531 -7.77771 -5.25222 -0.80451 0.13872 0.48723 0.55327 1.46696 1.51298 1.58261 1.82276 2.24062 2.52614 2.65469 2.95432 3.06761 3.36697 3.49151 3.63888 3.70808 3.77246 3.90182 4.01298 4.07625 4.13013 4.18853 4.31142 4.39799 4.50476 4.58834 4.62470 4.64630 4.70762 4.78982 4.85104 4.86540 4.99686 5.02353 5.10122 5.16089 5.28095 5.31971 5.38314 5.44480 5.55228 5.58536 5.59438 5.61836 5.70521 5.76391 6.04230 6.35309 6.55296 6.75579 7.14866 7.19025 7.90582 8.35518 9.23452 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.003261 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.752859 B = 8584.390165 C =10679.317612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.155 3.845 3 H 0.075 0.925 4 C 0.112 3.888 5 N -0.696 5.696 6 C 0.558 3.442 7 O -0.581 6.581 8 C -0.201 4.201 9 C -0.016 4.016 10 C -0.162 4.162 11 C 0.176 3.824 12 C -0.078 4.078 13 C -0.100 4.100 14 C -0.135 4.135 15 C -0.104 4.104 16 C -0.124 4.124 17 C -0.097 4.097 18 N -0.504 5.504 19 C 0.145 3.855 20 N -0.603 5.603 21 C 0.182 3.818 22 C -0.257 4.257 23 H 0.074 0.926 24 C -0.039 4.039 25 N -0.927 5.927 26 Si 0.952 3.048 27 H -0.266 1.266 28 H -0.300 1.300 29 H -0.298 1.298 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.409 0.591 36 H 0.162 0.838 37 H 0.184 0.816 38 H 0.114 0.886 39 H 0.140 0.860 40 H 0.153 0.847 41 H 0.159 0.841 42 H 0.152 0.848 43 H 0.152 0.848 44 H -0.002 1.002 45 H 0.015 0.985 46 H 0.024 0.976 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.127 0.778 -13.074 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 H 0.093 0.907 4 C -0.014 4.014 5 N -0.345 5.345 6 C 0.345 3.655 7 O -0.464 6.464 8 C -0.206 4.206 9 C -0.042 4.042 10 C -0.181 4.181 11 C 0.040 3.960 12 C -0.079 4.079 13 C -0.119 4.119 14 C -0.153 4.153 15 C -0.123 4.123 16 C -0.142 4.142 17 C -0.116 4.116 18 N -0.212 5.212 19 C -0.014 4.014 20 N -0.326 5.326 21 C 0.036 3.964 22 C -0.387 4.387 23 H 0.092 0.908 24 C -0.235 4.235 25 N -0.573 5.573 26 Si 0.782 3.218 27 H -0.191 1.191 28 H -0.227 1.227 29 H -0.225 1.225 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.247 0.753 36 H 0.179 0.821 37 H 0.201 0.799 38 H 0.133 0.867 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.177 0.823 42 H 0.170 0.830 43 H 0.170 0.830 44 H 0.016 0.984 45 H 0.034 0.966 46 H 0.042 0.958 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.154 0.735 -12.874 18.421 hybrid contribution -0.179 -0.007 1.239 1.252 sum 12.975 0.729 -11.635 17.443 Atomic orbital electron populations 1.22053 0.94863 1.01726 1.02124 1.20866 0.94431 0.95592 0.84308 0.90723 1.21969 0.79124 1.00576 0.99690 1.45875 1.08781 1.57317 1.22520 1.18214 0.87108 0.77815 0.82379 1.90681 1.70422 1.50430 1.34872 1.21042 0.94016 1.06404 0.99139 1.21847 0.93972 0.91627 0.96721 1.22350 0.94289 1.01706 0.99764 1.20474 0.94071 0.91618 0.89809 1.18685 0.89030 1.02803 0.97394 1.21444 0.95525 0.97832 0.97104 1.21413 0.93059 1.00305 1.00495 1.21710 1.01498 0.95821 0.93225 1.21485 0.93869 0.99771 0.99043 1.21564 0.94754 0.97348 0.97911 1.67635 1.07988 1.17106 1.28513 1.22913 0.89716 0.93500 0.95289 1.44092 1.57656 1.09347 1.21486 1.20416 0.94046 0.84709 0.97180 1.19520 1.15975 0.91301 1.11927 0.90799 1.25526 0.99065 0.96535 1.02339 1.70240 1.40376 1.08472 1.38211 0.85429 0.77550 0.78581 0.80215 1.19071 1.22704 1.22504 0.93259 0.92722 0.90343 0.90610 0.93605 0.75335 0.82054 0.79934 0.86740 0.84263 0.82944 0.82337 0.83012 0.83036 0.98361 0.96639 0.95754 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.18 71.98 0.66 -3.81 16 2 C 0.16 5.63 2.87 44.99 0.13 5.76 16 3 H 0.07 2.64 7.86 -2.39 -0.02 2.62 16 4 C 0.11 4.04 4.97 86.38 0.43 4.47 16 5 N -0.70 -26.93 5.34 -466.09 -2.49 -29.42 16 6 C 0.56 21.61 7.77 86.74 0.67 22.29 16 7 O -0.58 -24.51 16.41 -3.93 -0.06 -24.57 16 8 C -0.20 -6.97 5.89 -19.96 -0.12 -7.09 16 9 C -0.02 -0.44 9.70 22.70 0.22 -0.22 16 10 C -0.16 -3.84 9.44 22.53 0.21 -3.63 16 11 C 0.18 5.08 6.73 41.97 0.28 5.36 16 12 C -0.08 -1.93 5.88 -20.05 -0.12 -2.05 16 13 C -0.10 -2.54 9.57 22.50 0.22 -2.32 16 14 C -0.13 -2.56 10.03 22.24 0.22 -2.34 16 15 C -0.10 -1.50 10.04 22.32 0.22 -1.27 16 16 C -0.12 -1.67 10.03 22.23 0.22 -1.45 16 17 C -0.10 -1.66 9.42 22.50 0.21 -1.45 16 18 N -0.50 -17.63 9.40 -183.82 -1.73 -19.36 16 19 C 0.15 5.26 10.70 85.08 0.91 6.17 16 20 N -0.60 -27.34 2.29 -702.79 -1.61 -28.95 16 21 C 0.18 8.69 8.11 127.77 1.04 9.73 16 22 C -0.26 -12.84 9.33 84.03 0.78 -12.05 16 23 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 24 C -0.04 -2.02 5.10 84.86 0.43 -1.59 16 25 N -0.93 -52.18 10.64 21.65 0.23 -51.94 16 26 Si 0.95 43.67 29.57 68.60 2.03 45.70 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 29 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 30 H 0.05 1.51 6.66 -2.39 -0.02 1.50 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.05 1.79 7.84 -2.39 -0.02 1.77 16 35 H 0.41 16.75 5.94 -92.71 -0.55 16.20 16 36 H 0.16 4.02 7.73 -2.91 -0.02 4.00 16 37 H 0.18 2.64 6.17 -2.91 -0.02 2.62 16 38 H 0.11 3.32 7.53 -2.91 -0.02 3.30 16 39 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 40 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.15 1.72 6.17 -2.91 -0.02 1.70 16 43 H 0.15 5.83 6.41 -2.91 -0.02 5.81 16 44 H 0.00 -0.10 7.42 -2.38 -0.02 -0.12 16 45 H 0.01 0.79 7.20 -2.39 -0.02 0.77 16 46 H 0.02 1.02 6.43 -2.39 -0.02 1.00 16 47 H 0.24 13.71 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -67.00 387.82 3.45 -63.55 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.45 Total: 30.50 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 6.63 Total: 14.50 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -5.59 Total: -129.68 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.06 Total: -24.57 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -67.00 3.45 -63.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329586617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.712 kcal (2) G-P(sol) polarization free energy of solvation -66.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds