Wall clock time and date at job start Sat Apr 11 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47252 * 2 1 4 4 N 1.46500 * 109.47401 * 240.00062 * 2 1 3 5 5 C 1.34779 * 119.99910 * 84.99709 * 4 2 1 6 6 O 1.21281 * 119.99996 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99888 * 180.27631 * 5 4 2 8 8 C 1.53001 * 109.46978 * 179.73086 * 7 5 4 9 9 C 1.52998 * 109.47097 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.47443 * 179.97438 * 9 8 7 11 11 C 1.36373 * 125.96450 * 269.69355 * 10 9 8 12 12 O 1.35625 * 125.98747 * 0.03666 * 11 10 9 13 13 N 1.30903 * 108.02192 * 179.88466 * 11 10 9 14 14 N 1.40119 * 107.94024 * 0.36720 * 13 11 10 15 15 C 1.30903 * 107.93901 * 359.76776 * 14 13 11 16 16 O 1.35625 * 125.98754 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.46991 * 119.99884 * 2 1 3 18 18 C 1.53944 * 113.74364 * 282.06153 * 17 2 1 19 19 N 1.47589 * 86.11597 * 222.04468 * 18 17 2 20 20 C 1.36930 * 134.49209 * 204.63685 * 19 18 17 21 21 H 1.08002 * 120.00473 * 182.73833 * 20 19 18 22 22 C 1.38819 * 120.00112 * 2.74076 * 20 19 18 23 23 N 1.31621 * 119.99819 * 353.40219 * 22 20 19 24 24 Si 1.86795 * 120.00029 * 173.40695 * 22 20 19 25 25 H 1.48504 * 109.47356 * 94.96786 * 24 22 20 26 26 H 1.48499 * 109.47362 * 214.97000 * 24 22 20 27 27 H 1.48507 * 109.47358 * 334.96950 * 24 22 20 28 28 C 1.47577 * 91.01435 * 24.63921 * 19 18 17 29 29 H 1.08995 * 109.47496 * 184.48065 * 1 2 3 30 30 H 1.08997 * 109.47503 * 304.49116 * 1 2 3 31 31 H 1.09012 * 109.46939 * 64.48769 * 1 2 3 32 32 H 0.96995 * 119.99797 * 265.00369 * 4 2 1 33 33 H 1.09002 * 109.46865 * 299.72841 * 7 5 4 34 34 H 1.08996 * 109.46739 * 59.72926 * 7 5 4 35 35 H 1.09003 * 109.46666 * 299.99865 * 8 7 5 36 36 H 1.09001 * 109.47340 * 59.99595 * 8 7 5 37 37 H 1.08995 * 109.47013 * 300.00067 * 9 8 7 38 38 H 1.09001 * 109.46880 * 59.99375 * 9 8 7 39 39 H 0.96699 * 114.00559 * 89.99704 * 12 11 10 40 40 H 0.96704 * 114.00108 * 270.02128 * 16 15 14 41 41 H 1.09006 * 112.94229 * 53.79275 * 17 2 1 42 42 H 1.08997 * 113.76935 * 336.34277 * 18 17 2 43 43 H 1.09001 * 113.77441 * 107.74670 * 18 17 2 44 44 H 0.97002 * 119.99340 * 179.97438 * 23 22 20 45 45 H 1.08997 * 113.77265 * 221.06001 * 28 19 18 46 46 H 1.08998 * 113.77408 * 89.65701 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6436 -0.7301 -3.5891 8 6 2.6899 0.2517 -4.7616 9 6 3.1933 -0.4711 -6.0126 10 7 3.2371 0.4688 -7.1355 11 6 2.2250 0.7116 -8.0165 12 8 1.0017 0.1260 -8.0062 13 7 2.6399 1.6114 -8.8720 14 7 3.9575 1.9504 -8.5368 15 6 4.2992 1.2493 -7.4855 16 8 5.4993 1.2914 -6.8552 17 6 2.0399 -0.7212 1.2492 18 6 1.9689 0.1310 2.5293 19 7 3.3031 -0.4146 2.8463 20 6 4.0101 -0.6099 4.0026 21 1 5.0166 -0.9992 3.9610 22 6 3.4331 -0.3073 5.2284 23 7 2.2597 0.2870 5.2746 24 14 4.3222 -0.7436 6.8122 25 1 5.0961 0.4321 7.2856 26 1 3.3296 -1.1318 7.8463 27 1 5.2478 -1.8781 6.5641 28 6 3.5693 -0.6651 1.4165 29 1 -0.3634 -1.0244 0.0803 30 1 -0.3634 0.5819 0.8470 31 1 -0.3633 0.4427 -0.9276 32 1 2.2490 -1.6317 -1.1526 33 1 3.6436 -1.1223 -3.4039 34 1 1.9697 -1.5522 -3.8300 35 1 1.6898 0.6439 -4.9468 36 1 3.3637 1.0739 -4.5207 37 1 4.1932 -0.8637 -5.8277 38 1 2.5191 -1.2931 -6.2532 39 1 0.3438 0.5984 -7.4780 40 1 6.1465 0.6604 -7.1989 41 1 1.6225 -1.7218 1.3624 42 1 1.9665 1.2048 2.3426 43 1 1.1896 -0.1832 3.2237 44 1 1.8564 0.4980 6.1313 45 1 4.0676 -1.6149 1.2222 46 1 4.0368 0.1749 0.9028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330022060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:33 Heat of formation + Delta-G solvation = 23.481890 kcal Electronic energy + Delta-G solvation = -28787.924971 eV Core-core repulsion = 24524.326188 eV Total energy + Delta-G solvation = -4263.598783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.68294 -40.01170 -38.61739 -38.21603 -37.52796 -36.15621 -34.87394 -32.90141 -32.17962 -30.59873 -29.99605 -27.61762 -27.48040 -24.88260 -24.17440 -23.22959 -23.17909 -22.18031 -21.21965 -20.38665 -19.37498 -19.20236 -18.98775 -17.40863 -17.11288 -16.87193 -16.53286 -16.21363 -15.97844 -15.81093 -14.86182 -14.65693 -14.46401 -14.16991 -13.96010 -13.60329 -13.43644 -13.31090 -13.08004 -12.84675 -12.72361 -12.33307 -12.31462 -12.10403 -11.70047 -11.64317 -11.44651 -11.43995 -11.30209 -10.95413 -10.92989 -10.71243 -10.46724 -10.42079 -10.15546 -9.87386 -9.86194 -9.70815 -9.48821 -8.95117 -8.78216 -6.93524 -5.82019 -3.13215 1.08854 1.29398 1.81295 2.58558 2.79641 3.07613 3.35555 3.38506 3.40620 3.42873 3.91228 4.21764 4.37987 4.40987 4.59482 4.70909 4.76837 4.83336 4.88929 5.04532 5.08891 5.15840 5.20034 5.34572 5.47865 5.50581 5.57566 5.65899 5.70411 5.75173 5.92856 5.99612 6.20158 6.28285 6.36847 6.51501 6.56373 6.57000 6.73136 6.86614 7.16667 7.31332 7.46974 7.50005 7.53370 7.93727 8.21338 9.00144 9.66535 10.55405 11.35587 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.001798 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.706371 B =15565.958845 C =16275.565680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.087 0.913 4 N -0.718 5.718 5 C 0.510 3.490 6 O -0.544 6.544 7 C -0.138 4.138 8 C -0.119 4.119 9 C 0.100 3.900 10 N -0.510 5.510 11 C 0.407 3.593 12 O -0.437 6.437 13 N -0.297 5.297 14 N -0.298 5.298 15 C 0.408 3.592 16 O -0.433 6.433 17 C -0.147 4.147 18 C 0.175 3.825 19 N -0.612 5.612 20 C -0.225 4.225 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.126 3.874 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.399 0.601 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.414 0.586 40 H 0.411 0.589 41 H 0.088 0.912 42 H 0.028 0.972 43 H 0.073 0.927 44 H 0.254 0.746 45 H 0.040 0.960 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -6.707 -24.649 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 H 0.105 0.895 4 N -0.368 5.368 5 C 0.296 3.704 6 O -0.421 6.421 7 C -0.179 4.179 8 C -0.158 4.158 9 C -0.023 4.023 10 N -0.230 5.230 11 C 0.097 3.903 12 O -0.237 6.237 13 N -0.141 5.141 14 N -0.142 5.142 15 C 0.098 3.902 16 O -0.233 6.233 17 C -0.167 4.167 18 C 0.049 3.951 19 N -0.338 5.338 20 C -0.353 4.353 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.001 4.001 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.232 0.768 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.270 0.730 41 H 0.107 0.893 42 H 0.045 0.955 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.039 -4.838 -25.523 25.999 hybrid contribution 0.583 -1.642 2.332 2.911 sum -0.456 -6.481 -23.191 24.084 Atomic orbital electron populations 1.22098 0.95445 1.01867 1.02093 1.21117 0.93771 0.97470 0.83144 0.89528 1.46154 1.66751 1.14047 1.09860 1.20448 0.77905 0.87415 0.84652 1.90727 1.50209 1.16038 1.85123 1.21556 1.03844 0.99348 0.93140 1.21665 1.03533 0.98765 0.91815 1.22037 1.04760 0.91157 0.84368 1.47147 1.13397 1.35944 1.26492 1.21328 0.85347 0.94354 0.89294 1.84919 1.14893 1.50917 1.73004 1.78378 1.03203 1.11461 1.21080 1.78385 1.04485 1.21304 1.10028 1.21342 0.84779 0.91945 0.92118 1.85007 1.17505 1.62321 1.58440 1.23845 0.97602 1.00682 0.94552 1.22196 0.89708 0.93908 0.89260 1.45995 1.16178 1.71962 0.99657 1.19020 0.96902 1.36801 0.82530 0.90308 1.24795 0.97306 1.00819 0.97500 1.69825 1.17195 1.45447 1.24274 0.86114 0.78395 0.78045 0.83268 1.21656 1.21552 1.20574 1.22528 0.93066 0.97593 0.86872 0.92736 0.91138 0.92961 0.76755 0.88353 0.88531 0.90631 0.89822 0.88286 0.87968 0.72713 0.73020 0.89330 0.95456 0.90837 0.93595 0.94142 0.95129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.43 37.16 0.35 -1.68 16 2 C 0.15 2.12 2.29 -67.93 -0.16 1.96 16 3 H 0.09 1.47 7.49 -51.93 -0.39 1.08 16 4 N -0.72 -7.72 4.95 -53.81 -0.27 -7.99 16 5 C 0.51 5.56 7.79 -10.98 -0.09 5.48 16 6 O -0.54 -8.40 15.64 5.56 0.09 -8.32 16 7 C -0.14 -0.78 5.70 -27.88 -0.16 -0.94 16 8 C -0.12 -0.76 4.83 -26.73 -0.13 -0.89 16 9 C 0.10 0.42 6.01 -4.04 -0.02 0.39 16 10 N -0.51 -3.72 2.76 -120.06 -0.33 -4.05 16 11 C 0.41 3.56 9.15 -88.81 -0.81 2.75 16 12 O -0.44 -2.56 13.57 -18.57 -0.25 -2.81 16 13 N -0.30 -3.57 12.72 29.65 0.38 -3.19 16 14 N -0.30 -3.61 12.72 29.65 0.38 -3.23 16 15 C 0.41 3.65 9.15 -88.81 -0.81 2.83 16 16 O -0.43 -2.71 13.58 -18.57 -0.25 -2.96 16 17 C -0.15 -2.47 3.36 -89.70 -0.30 -2.77 16 18 C 0.18 3.95 7.02 -2.97 -0.02 3.93 16 19 N -0.61 -15.34 3.70 -177.90 -0.66 -16.00 16 20 C -0.22 -6.24 10.69 -15.06 -0.16 -6.40 16 21 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.00 11.43 55.49 0.63 -26.37 16 24 Si 0.91 21.87 29.56 -169.99 -5.02 16.84 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.13 2.41 8.38 -2.98 -0.02 2.39 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.40 3.22 8.60 -40.82 -0.35 2.87 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.41 0.54 9.06 45.56 0.41 0.95 16 40 H 0.41 0.22 9.06 45.56 0.41 0.63 16 41 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 43 H 0.07 1.83 7.19 -51.93 -0.37 1.46 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 394.41 15.07 5.94 5.94 Total: -1.00 -39.27 394.41 -7.12 -46.38 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.32 Total: -0.99 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -2.43 Total: 6.74 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.13 Total: -60.83 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.42 Total: -14.09 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.27 -7.12 -46.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330022060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.865 kcal (2) G-P(sol) polarization free energy of solvation -39.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds