Wall clock time and date at job start Sat Apr 11 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47252 * 2 1 4 4 N 1.46500 * 109.47401 * 240.00062 * 2 1 3 5 5 C 1.34779 * 119.99910 * 84.99709 * 4 2 1 6 6 O 1.21281 * 119.99996 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99888 * 180.27631 * 5 4 2 8 8 C 1.53001 * 109.46978 * 179.73086 * 7 5 4 9 9 C 1.52998 * 109.47097 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.47443 * 179.97438 * 9 8 7 11 11 C 1.36373 * 125.96450 * 269.69355 * 10 9 8 12 12 O 1.35625 * 125.98747 * 0.03666 * 11 10 9 13 13 N 1.30903 * 108.02192 * 179.88466 * 11 10 9 14 14 N 1.40119 * 107.94024 * 0.36720 * 13 11 10 15 15 C 1.30903 * 107.93901 * 359.76776 * 14 13 11 16 16 O 1.35625 * 125.98754 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.46991 * 119.99884 * 2 1 3 18 18 C 1.53944 * 113.74364 * 282.06153 * 17 2 1 19 19 N 1.47589 * 86.11597 * 222.04468 * 18 17 2 20 20 C 1.36930 * 134.49209 * 204.63685 * 19 18 17 21 21 H 1.08002 * 120.00473 * 182.73833 * 20 19 18 22 22 C 1.38819 * 120.00112 * 2.74076 * 20 19 18 23 23 N 1.31621 * 119.99819 * 353.40219 * 22 20 19 24 24 Si 1.86795 * 120.00029 * 173.40695 * 22 20 19 25 25 H 1.48504 * 109.47356 * 94.96786 * 24 22 20 26 26 H 1.48499 * 109.47362 * 214.97000 * 24 22 20 27 27 H 1.48507 * 109.47358 * 334.96950 * 24 22 20 28 28 C 1.47577 * 91.01435 * 24.63921 * 19 18 17 29 29 H 1.08995 * 109.47496 * 184.48065 * 1 2 3 30 30 H 1.08997 * 109.47503 * 304.49116 * 1 2 3 31 31 H 1.09012 * 109.46939 * 64.48769 * 1 2 3 32 32 H 0.96995 * 119.99797 * 265.00369 * 4 2 1 33 33 H 1.09002 * 109.46865 * 299.72841 * 7 5 4 34 34 H 1.08996 * 109.46739 * 59.72926 * 7 5 4 35 35 H 1.09003 * 109.46666 * 299.99865 * 8 7 5 36 36 H 1.09001 * 109.47340 * 59.99595 * 8 7 5 37 37 H 1.08995 * 109.47013 * 300.00067 * 9 8 7 38 38 H 1.09001 * 109.46880 * 59.99375 * 9 8 7 39 39 H 0.96699 * 114.00559 * 89.99704 * 12 11 10 40 40 H 0.96704 * 114.00108 * 270.02128 * 16 15 14 41 41 H 1.09006 * 112.94229 * 53.79275 * 17 2 1 42 42 H 1.08997 * 113.76935 * 336.34277 * 18 17 2 43 43 H 1.09001 * 113.77441 * 107.74670 * 18 17 2 44 44 H 0.97002 * 119.99340 * 179.97438 * 23 22 20 45 45 H 1.08997 * 113.77265 * 221.06001 * 28 19 18 46 46 H 1.08998 * 113.77408 * 89.65701 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6436 -0.7301 -3.5891 8 6 2.6899 0.2517 -4.7616 9 6 3.1933 -0.4711 -6.0126 10 7 3.2371 0.4688 -7.1355 11 6 2.2250 0.7116 -8.0165 12 8 1.0017 0.1260 -8.0062 13 7 2.6399 1.6114 -8.8720 14 7 3.9575 1.9504 -8.5368 15 6 4.2992 1.2493 -7.4855 16 8 5.4993 1.2914 -6.8552 17 6 2.0399 -0.7212 1.2492 18 6 1.9689 0.1310 2.5293 19 7 3.3031 -0.4146 2.8463 20 6 4.0101 -0.6099 4.0026 21 1 5.0166 -0.9992 3.9610 22 6 3.4331 -0.3073 5.2284 23 7 2.2597 0.2870 5.2746 24 14 4.3222 -0.7436 6.8122 25 1 5.0961 0.4321 7.2856 26 1 3.3296 -1.1318 7.8463 27 1 5.2478 -1.8781 6.5641 28 6 3.5693 -0.6651 1.4165 29 1 -0.3634 -1.0244 0.0803 30 1 -0.3634 0.5819 0.8470 31 1 -0.3633 0.4427 -0.9276 32 1 2.2490 -1.6317 -1.1526 33 1 3.6436 -1.1223 -3.4039 34 1 1.9697 -1.5522 -3.8300 35 1 1.6898 0.6439 -4.9468 36 1 3.3637 1.0739 -4.5207 37 1 4.1932 -0.8637 -5.8277 38 1 2.5191 -1.2931 -6.2532 39 1 0.3438 0.5984 -7.4780 40 1 6.1465 0.6604 -7.1989 41 1 1.6225 -1.7218 1.3624 42 1 1.9665 1.2048 2.3426 43 1 1.1896 -0.1832 3.2237 44 1 1.8564 0.4980 6.1313 45 1 4.0676 -1.6149 1.2222 46 1 4.0368 0.1749 0.9028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330022060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:32 Heat of formation + Delta-G solvation = -13.215869 kcal Electronic energy + Delta-G solvation = -28789.516306 eV Core-core repulsion = 24524.326188 eV Total energy + Delta-G solvation = -4265.190118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28868 -41.03473 -39.68249 -39.11031 -38.02765 -36.75698 -36.07099 -34.16341 -33.48477 -31.74925 -30.66788 -29.35997 -28.12070 -26.52759 -25.71630 -24.05239 -23.81521 -22.85939 -22.37407 -21.35472 -20.61123 -19.78546 -19.62804 -18.79611 -18.13170 -17.70037 -17.26327 -17.17943 -16.84631 -16.67980 -16.36360 -15.84579 -15.46986 -15.19867 -15.01060 -14.76590 -14.60828 -14.11031 -13.93822 -13.60234 -13.47722 -13.34074 -13.24520 -13.08444 -13.02730 -12.96475 -12.86579 -12.67661 -12.36153 -12.31313 -12.05066 -11.91002 -11.79881 -11.57099 -11.48828 -11.23827 -11.06877 -10.82911 -10.73160 -10.54259 -9.98124 -8.94343 -7.92792 -5.25213 0.53478 0.76085 1.16686 1.45034 1.46403 1.55940 1.76477 2.22974 2.26296 2.46608 2.93308 3.28836 3.38652 3.53435 3.61235 3.80061 3.92646 3.99221 4.09085 4.19448 4.27474 4.33761 4.41929 4.44305 4.51400 4.58336 4.72665 4.73893 4.77402 4.86135 4.86801 4.96839 5.07150 5.13049 5.20058 5.24244 5.30382 5.36541 5.53080 5.60574 5.66394 5.92913 6.25797 6.48281 6.70916 6.82403 6.90696 7.40695 7.59850 8.55572 9.24741 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.001798 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.706371 B =15565.958845 C =16275.565680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 H 0.053 0.947 4 N -0.708 5.708 5 C 0.504 3.496 6 O -0.596 6.596 7 C -0.124 4.124 8 C -0.114 4.114 9 C 0.102 3.898 10 N -0.504 5.504 11 C 0.417 3.583 12 O -0.434 6.434 13 N -0.345 5.345 14 N -0.347 5.347 15 C 0.418 3.582 16 O -0.436 6.436 17 C -0.106 4.106 18 C 0.167 3.833 19 N -0.645 5.645 20 C -0.236 4.236 21 H 0.084 0.916 22 C -0.069 4.069 23 N -0.954 5.954 24 Si 0.979 3.021 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.264 1.264 28 C 0.129 3.871 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.417 0.583 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.434 0.566 40 H 0.436 0.564 41 H 0.108 0.892 42 H 0.006 0.994 43 H 0.044 0.956 44 H 0.249 0.751 45 H 0.067 0.933 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -9.989 -25.633 27.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.072 0.928 4 N -0.360 5.360 5 C 0.293 3.707 6 O -0.477 6.477 7 C -0.164 4.164 8 C -0.153 4.153 9 C -0.019 4.019 10 N -0.224 5.224 11 C 0.106 3.894 12 O -0.237 6.237 13 N -0.190 5.190 14 N -0.192 5.192 15 C 0.107 3.893 16 O -0.240 6.240 17 C -0.126 4.126 18 C 0.041 3.959 19 N -0.371 5.371 20 C -0.364 4.364 21 H 0.102 0.898 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.807 3.193 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.189 1.189 28 C 0.004 3.996 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.254 0.746 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.296 0.704 40 H 0.299 0.701 41 H 0.126 0.874 42 H 0.024 0.976 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.249 -8.185 -26.538 27.773 hybrid contribution 0.365 -0.604 2.646 2.739 sum 0.116 -8.789 -23.892 25.457 Atomic orbital electron populations 1.22025 0.94326 1.02976 1.01529 1.20657 0.94506 0.95684 0.83599 0.92848 1.45949 1.66520 1.14784 1.08713 1.21430 0.76614 0.86918 0.85757 1.90721 1.52378 1.18647 1.85939 1.21579 1.06065 0.99235 0.89537 1.21561 1.02050 0.98348 0.93336 1.22280 1.07040 0.90512 0.82093 1.47212 1.12436 1.35986 1.26772 1.21350 0.86199 0.93145 0.88702 1.84896 1.14281 1.50855 1.73675 1.78239 1.03726 1.13722 1.23278 1.78247 1.05121 1.23409 1.12385 1.21363 0.85673 0.91107 0.91193 1.84978 1.17179 1.63586 1.58254 1.23426 0.95999 1.00284 0.92904 1.22111 0.88329 0.93592 0.91828 1.46464 1.17100 1.72168 1.01366 1.19448 0.97308 1.35761 0.83919 0.89792 1.25665 0.98328 1.01427 1.00801 1.70020 1.18832 1.47025 1.24465 0.85058 0.77262 0.77948 0.79022 1.21818 1.21909 1.18865 1.22679 0.94874 0.98497 0.83561 0.90558 0.92582 0.92878 0.74580 0.85464 0.84596 0.92010 0.93149 0.85557 0.85268 0.70393 0.70127 0.87392 0.97612 0.93800 0.94251 0.91527 0.95274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.43 71.98 0.68 -3.05 16 2 C 0.16 4.40 2.29 44.99 0.10 4.50 16 3 H 0.05 1.85 7.49 -2.39 -0.02 1.83 16 4 N -0.71 -13.12 4.95 -442.53 -2.19 -15.31 16 5 C 0.50 9.77 7.79 87.66 0.68 10.45 16 6 O -0.60 -18.22 15.64 -3.03 -0.05 -18.26 16 7 C -0.12 -0.85 5.70 29.85 0.17 -0.68 16 8 C -0.11 -1.15 4.83 30.59 0.15 -1.00 16 9 C 0.10 0.45 6.01 86.38 0.52 0.97 16 10 N -0.50 -6.38 2.76 -755.20 -2.08 -8.46 16 11 C 0.42 6.83 9.15 179.72 1.65 8.48 16 12 O -0.43 -4.20 13.57 -89.38 -1.21 -5.41 16 13 N -0.35 -8.42 12.72 -173.66 -2.21 -10.62 16 14 N -0.35 -8.56 12.72 -173.67 -2.21 -10.77 16 15 C 0.42 7.08 9.15 179.72 1.65 8.72 16 16 O -0.44 -4.76 13.58 -89.37 -1.21 -5.97 16 17 C -0.11 -3.44 3.36 -10.14 -0.03 -3.47 16 18 C 0.17 7.76 7.02 86.48 0.61 8.37 16 19 N -0.64 -32.39 3.70 -716.74 -2.65 -35.04 16 20 C -0.24 -13.11 10.69 84.04 0.90 -12.21 16 21 H 0.08 4.43 7.84 -2.91 -0.02 4.41 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 23 N -0.95 -57.62 11.43 21.65 0.25 -57.37 16 24 Si 0.98 45.27 29.56 68.60 2.03 47.30 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 28 C 0.13 4.74 8.38 86.48 0.72 5.46 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.42 4.80 8.60 -92.71 -0.80 4.01 16 33 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.14 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 36 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 37 H 0.13 -0.07 8.14 -2.39 -0.02 -0.08 16 38 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.43 0.28 9.06 -74.06 -0.67 -0.39 16 40 H 0.44 -0.53 9.06 -74.05 -0.67 -1.20 16 41 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 42 H 0.01 0.30 8.04 -2.39 -0.02 0.28 16 43 H 0.04 2.27 7.19 -2.39 -0.02 2.25 16 44 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -91.33 394.41 -4.39 -95.72 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -1.10 Total: 1.16 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 8.25 Total: 23.06 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -11.10 Total: -137.58 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -2.47 Total: -29.65 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -91.33 -4.39 -95.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330022060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.501 kcal (2) G-P(sol) polarization free energy of solvation -91.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds