Wall clock time and date at job start Sat Apr 11 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47004 * 2 1 4 4 C 1.53002 * 109.47022 * 239.99310 * 2 1 3 5 5 N 1.46498 * 109.46837 * 185.00081 * 4 2 1 6 6 C 1.46495 * 120.00283 * 270.00228 * 5 4 2 7 7 C 1.34783 * 119.99912 * 89.99987 * 5 4 2 8 8 O 1.21735 * 119.99509 * 6.23256 * 7 5 4 9 9 C 1.46372 * 120.00011 * 186.22510 * 7 5 4 10 10 C 1.36725 * 126.82893 * 357.77542 * 9 7 5 11 11 N 1.33220 * 107.96225 * 179.97438 * 10 9 7 12 12 C 1.31539 * 109.76453 * 359.97438 * 11 10 9 13 13 O 1.35206 * 125.49077 * 180.02562 * 12 11 10 14 14 N 1.34941 * 109.01116 * 0.02562 * 12 11 10 15 15 C 1.46500 * 126.54039 * 179.97438 * 14 12 11 16 16 N 1.46903 * 109.46747 * 119.99813 * 2 1 3 17 17 C 1.46909 * 110.99585 * 274.99749 * 16 2 1 18 18 C 1.50705 * 109.46632 * 180.02562 * 17 16 2 19 19 O 1.21289 * 120.00230 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99502 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99573 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00038 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99641 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00290 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99986 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47081 * 90.00090 * 25 23 21 27 27 H 1.48499 * 109.47110 * 210.00698 * 25 23 21 28 28 H 1.48501 * 109.46873 * 330.00576 * 25 23 21 29 29 H 1.08998 * 109.47410 * 300.00968 * 1 2 3 30 30 H 1.09008 * 109.47101 * 60.00534 * 1 2 3 31 31 H 1.09001 * 109.47318 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46946 * 65.00302 * 4 2 1 33 33 H 1.09000 * 109.46997 * 305.00233 * 4 2 1 34 34 H 1.09002 * 109.47094 * 246.77233 * 6 5 4 35 35 H 1.09001 * 109.46844 * 6.77323 * 6 5 4 36 36 H 1.09004 * 109.47510 * 126.77174 * 6 5 4 37 37 H 1.07997 * 126.01466 * 359.70014 * 10 9 7 38 38 H 0.96700 * 114.00143 * 269.97366 * 13 12 11 39 39 H 1.09003 * 109.47274 * 276.04701 * 15 14 12 40 40 H 1.09005 * 109.47580 * 36.04694 * 15 14 12 41 41 H 1.09001 * 109.47445 * 156.05106 * 15 14 12 42 42 H 1.00902 * 111.00170 * 38.95040 * 16 2 1 43 43 H 1.08997 * 109.46993 * 299.99987 * 17 16 2 44 44 H 1.08995 * 109.46851 * 60.00504 * 17 16 2 45 45 H 0.96997 * 119.99909 * 359.97438 * 20 18 17 46 46 H 0.96999 * 120.00446 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1904 6 6 4.3343 0.2338 -1.7611 7 6 4.0757 -1.8988 -0.6113 8 8 3.3881 -2.8319 -0.2390 9 6 5.5275 -1.9414 -0.4301 10 6 6.4316 -0.9974 -0.8312 11 7 7.6460 -1.4148 -0.4768 12 6 7.5569 -2.5782 0.1305 13 8 8.5968 -3.2889 0.6219 14 7 6.2602 -2.9479 0.1840 15 6 5.7274 -4.1771 0.7769 16 7 2.0196 -0.6925 1.1995 17 6 2.0824 0.2228 2.3469 18 6 2.5883 -0.5213 3.5558 19 8 2.8686 -1.6983 3.4702 20 7 2.7284 0.1209 4.7325 21 6 3.1882 -0.5562 5.8324 22 1 3.4385 -1.6039 5.7559 23 6 3.3332 0.1060 7.0453 24 7 3.0291 1.3811 7.1383 25 14 3.9604 -0.8162 8.5438 26 1 5.4413 -0.7221 8.5990 27 1 3.3801 -0.2171 9.7724 28 1 3.5582 -2.2427 8.4512 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -0.1586 -2.1369 33 1 1.6053 -1.7199 -1.2950 34 1 4.8756 -0.1545 -2.6240 35 1 3.7022 1.0653 -2.0728 36 1 5.0460 0.5795 -1.0113 37 1 6.2019 -0.0776 -1.3485 38 1 8.9845 -3.9080 -0.0118 39 1 5.7943 -4.9886 0.0522 40 1 6.3067 -4.4335 1.6640 41 1 4.6848 -4.0239 1.0555 42 1 1.4494 -1.4979 1.4102 43 1 2.7588 1.0463 2.1182 44 1 1.0870 0.6165 2.5525 45 1 2.5040 1.0620 4.8010 46 1 3.1300 1.8433 7.9851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331531599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:50 Heat of formation + Delta-G solvation = -11.415324 kcal Electronic energy + Delta-G solvation = -30759.073511 eV Core-core repulsion = 26493.961471 eV Total energy + Delta-G solvation = -4265.112040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.21806 -39.54362 -38.24440 -37.38261 -36.64124 -35.23501 -33.88927 -33.75800 -31.36719 -30.95484 -29.45442 -27.72324 -26.74466 -26.27149 -25.97502 -23.90426 -22.49247 -21.73480 -20.71515 -19.53563 -19.13160 -18.52484 -17.84502 -16.97592 -16.66523 -16.39770 -15.85299 -15.81711 -15.31363 -14.83927 -14.66542 -14.42119 -14.27968 -14.24738 -13.89920 -13.70745 -13.25178 -13.09818 -12.93254 -12.64819 -12.59120 -12.44717 -12.27415 -12.14199 -12.09181 -11.83303 -11.52531 -11.40294 -11.26857 -11.01239 -10.94387 -10.36842 -10.19083 -10.18094 -9.74732 -9.61772 -9.46016 -8.66185 -8.42176 -8.30662 -7.93083 -7.86253 -6.37514 -3.77839 1.32033 2.22972 2.66961 3.14796 3.20621 3.28551 3.34421 3.55395 3.80553 3.97466 4.14163 4.36597 4.57621 4.83008 4.88213 4.97106 5.00966 5.09326 5.16950 5.22804 5.26275 5.28303 5.30039 5.34452 5.41583 5.56443 5.64241 5.73633 5.74979 5.79514 5.92682 6.05854 6.09363 6.11444 6.33210 6.38309 6.46395 6.61185 7.33081 7.43758 7.48427 7.58948 7.80093 7.80950 8.11231 8.38646 8.66873 9.22922 9.59774 10.12147 10.80491 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008774 B = 0.004036 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.430250 B = 6935.790907 C = 9138.466058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 H 0.077 0.923 4 C 0.134 3.866 5 N -0.595 5.595 6 C 0.062 3.938 7 C 0.611 3.389 8 O -0.523 6.523 9 C -0.060 4.060 10 C 0.016 3.984 11 N -0.491 5.491 12 C 0.387 3.613 13 O -0.439 6.439 14 N -0.421 5.421 15 C 0.064 3.936 16 N -0.652 5.652 17 C 0.052 3.948 18 C 0.442 3.558 19 O -0.578 6.578 20 N -0.567 5.567 21 C -0.296 4.296 22 H 0.101 0.899 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.204 0.796 38 H 0.400 0.600 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.352 0.648 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.155 -2.134 -21.230 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.049 4.049 3 H 0.095 0.905 4 C 0.010 3.990 5 N -0.328 5.328 6 C -0.081 4.081 7 C 0.399 3.601 8 O -0.399 6.399 9 C -0.177 4.177 10 C -0.137 4.137 11 N -0.220 5.220 12 C 0.088 3.912 13 O -0.239 6.239 14 N -0.113 5.113 15 C -0.078 4.078 16 N -0.284 5.284 17 C -0.080 4.080 18 C 0.227 3.773 19 O -0.461 6.461 20 N -0.204 5.204 21 C -0.426 4.426 22 H 0.119 0.881 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.755 3.245 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.195 1.195 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.220 0.780 38 H 0.256 0.744 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.173 0.827 43 H 0.099 0.901 44 H 0.058 0.942 45 H 0.224 0.776 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.318 -2.774 -20.561 20.877 hybrid contribution -1.226 -0.272 1.124 1.685 sum 1.092 -3.046 -19.437 19.705 Atomic orbital electron populations 1.22464 0.96943 1.02451 1.02226 1.22045 0.92523 0.98245 0.92078 0.90472 1.21527 0.78890 1.02170 0.96384 1.46994 1.06379 1.20635 1.58788 1.22418 0.96229 0.90923 0.98523 1.16272 0.84249 0.82415 0.77163 1.90770 1.64076 1.36082 1.48958 1.20616 0.93948 0.93841 1.09258 1.23731 0.86948 1.00166 1.02862 1.70295 1.25955 1.09220 1.16518 1.20227 0.79428 0.91229 1.00352 1.84850 1.42819 1.56184 1.40059 1.45587 1.06671 1.17609 1.41391 1.22345 1.04024 0.82873 0.98572 1.60094 1.57705 1.08602 1.02040 1.21676 0.99495 0.95683 0.91176 1.19851 0.84998 0.88288 0.84157 1.90535 1.54875 1.16189 1.84527 1.41863 1.58128 1.12405 1.07970 1.19668 1.39790 0.96355 0.86785 0.88117 1.25231 0.97759 0.95771 0.99184 1.69610 1.48933 1.08853 1.27107 0.85884 0.78853 0.79471 0.80244 1.20420 1.20930 1.19488 0.92274 0.92191 0.92143 0.90265 0.89626 0.91788 0.90459 0.90238 0.77999 0.74374 0.90627 0.89464 0.86406 0.82715 0.90125 0.94181 0.77592 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.16 37.16 0.34 -1.44 16 2 C 0.06 0.72 2.89 -67.71 -0.20 0.53 16 3 H 0.08 0.84 7.80 -51.93 -0.40 0.43 16 4 C 0.13 1.37 5.18 -4.04 -0.02 1.35 16 5 N -0.60 -6.91 2.78 -183.24 -0.51 -7.42 16 6 C 0.06 0.48 8.63 59.84 0.52 1.00 16 7 C 0.61 9.41 6.85 -12.99 -0.09 9.32 16 8 O -0.52 -9.49 13.84 5.16 0.07 -9.42 16 9 C -0.06 -0.91 6.86 -81.98 -0.56 -1.47 16 10 C 0.02 0.22 9.93 -17.50 -0.17 0.05 16 11 N -0.49 -7.61 11.22 -14.62 -0.16 -7.77 16 12 C 0.39 5.77 9.01 -89.60 -0.81 4.96 16 13 O -0.44 -5.30 13.53 -17.31 -0.23 -5.53 16 14 N -0.42 -6.43 3.20 -122.12 -0.39 -6.82 16 15 C 0.06 0.86 10.77 59.85 0.64 1.51 16 16 N -0.65 -10.69 4.40 -107.99 -0.48 -11.17 16 17 C 0.05 0.95 5.97 -4.97 -0.03 0.92 16 18 C 0.44 10.80 7.82 -10.98 -0.09 10.71 16 19 O -0.58 -16.25 15.78 5.55 0.09 -16.16 16 20 N -0.57 -14.84 5.29 -10.96 -0.06 -14.90 16 21 C -0.30 -8.53 9.68 -14.93 -0.14 -8.68 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -25.19 13.05 55.50 0.72 -24.47 16 25 Si 0.93 21.72 29.55 -169.99 -5.02 16.70 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.63 7.45 -51.93 -0.39 0.25 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 32 H 0.08 0.55 7.98 -51.93 -0.41 0.13 16 33 H 0.09 1.01 7.34 -51.93 -0.38 0.63 16 34 H 0.06 0.40 7.47 -51.93 -0.39 0.01 16 35 H 0.08 0.41 7.86 -51.93 -0.41 0.01 16 36 H 0.08 0.69 5.38 -51.93 -0.28 0.41 16 37 H 0.20 2.00 4.06 -52.49 -0.21 1.78 16 38 H 0.40 2.38 9.06 45.56 0.41 2.79 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.12 1.97 6.23 -51.93 -0.32 1.64 16 42 H 0.35 6.43 8.17 -39.29 -0.32 6.10 16 43 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 44 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 45 H 0.39 9.81 7.90 -40.82 -0.32 9.48 16 46 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -37.93 382.43 -6.35 -44.28 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -5.44 Total: 17.63 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: -0.70 Total: 19.26 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -0.87 Total: -72.53 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.08 Total: -31.11 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.93 -6.35 -44.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331531599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.864 kcal (2) G-P(sol) polarization free energy of solvation -37.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds