Wall clock time and date at job start Sat Apr 11 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47004 * 2 1 4 4 C 1.53002 * 109.47022 * 239.99310 * 2 1 3 5 5 N 1.46498 * 109.46837 * 185.00081 * 4 2 1 6 6 C 1.46495 * 120.00283 * 270.00228 * 5 4 2 7 7 C 1.34783 * 119.99912 * 89.99987 * 5 4 2 8 8 O 1.21735 * 119.99509 * 6.23256 * 7 5 4 9 9 C 1.46372 * 120.00011 * 186.22510 * 7 5 4 10 10 C 1.36725 * 126.82893 * 357.77542 * 9 7 5 11 11 N 1.33220 * 107.96225 * 179.97438 * 10 9 7 12 12 C 1.31539 * 109.76453 * 359.97438 * 11 10 9 13 13 O 1.35206 * 125.49077 * 180.02562 * 12 11 10 14 14 N 1.34941 * 109.01116 * 0.02562 * 12 11 10 15 15 C 1.46500 * 126.54039 * 179.97438 * 14 12 11 16 16 N 1.46903 * 109.46747 * 119.99813 * 2 1 3 17 17 C 1.46909 * 110.99585 * 274.99749 * 16 2 1 18 18 C 1.50705 * 109.46632 * 180.02562 * 17 16 2 19 19 O 1.21289 * 120.00230 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99502 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99573 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00038 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99641 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00290 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99986 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47081 * 90.00090 * 25 23 21 27 27 H 1.48499 * 109.47110 * 210.00698 * 25 23 21 28 28 H 1.48501 * 109.46873 * 330.00576 * 25 23 21 29 29 H 1.08998 * 109.47410 * 300.00968 * 1 2 3 30 30 H 1.09008 * 109.47101 * 60.00534 * 1 2 3 31 31 H 1.09001 * 109.47318 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46946 * 65.00302 * 4 2 1 33 33 H 1.09000 * 109.46997 * 305.00233 * 4 2 1 34 34 H 1.09002 * 109.47094 * 246.77233 * 6 5 4 35 35 H 1.09001 * 109.46844 * 6.77323 * 6 5 4 36 36 H 1.09004 * 109.47510 * 126.77174 * 6 5 4 37 37 H 1.07997 * 126.01466 * 359.70014 * 10 9 7 38 38 H 0.96700 * 114.00143 * 269.97366 * 13 12 11 39 39 H 1.09003 * 109.47274 * 276.04701 * 15 14 12 40 40 H 1.09005 * 109.47580 * 36.04694 * 15 14 12 41 41 H 1.09001 * 109.47445 * 156.05106 * 15 14 12 42 42 H 1.00902 * 111.00170 * 38.95040 * 16 2 1 43 43 H 1.08997 * 109.46993 * 299.99987 * 17 16 2 44 44 H 1.08995 * 109.46851 * 60.00504 * 17 16 2 45 45 H 0.96997 * 119.99909 * 359.97438 * 20 18 17 46 46 H 0.96999 * 120.00446 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1904 6 6 4.3343 0.2338 -1.7611 7 6 4.0757 -1.8988 -0.6113 8 8 3.3881 -2.8319 -0.2390 9 6 5.5275 -1.9414 -0.4301 10 6 6.4316 -0.9974 -0.8312 11 7 7.6460 -1.4148 -0.4768 12 6 7.5569 -2.5782 0.1305 13 8 8.5968 -3.2889 0.6219 14 7 6.2602 -2.9479 0.1840 15 6 5.7274 -4.1771 0.7769 16 7 2.0196 -0.6925 1.1995 17 6 2.0824 0.2228 2.3469 18 6 2.5883 -0.5213 3.5558 19 8 2.8686 -1.6983 3.4702 20 7 2.7284 0.1209 4.7325 21 6 3.1882 -0.5562 5.8324 22 1 3.4385 -1.6039 5.7559 23 6 3.3332 0.1060 7.0453 24 7 3.0291 1.3811 7.1383 25 14 3.9604 -0.8162 8.5438 26 1 5.4413 -0.7221 8.5990 27 1 3.3801 -0.2171 9.7724 28 1 3.5582 -2.2427 8.4512 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -0.1586 -2.1369 33 1 1.6053 -1.7199 -1.2950 34 1 4.8756 -0.1545 -2.6240 35 1 3.7022 1.0653 -2.0728 36 1 5.0460 0.5795 -1.0113 37 1 6.2019 -0.0776 -1.3485 38 1 8.9845 -3.9080 -0.0118 39 1 5.7943 -4.9886 0.0522 40 1 6.3067 -4.4335 1.6640 41 1 4.6848 -4.0239 1.0555 42 1 1.4494 -1.4979 1.4102 43 1 2.7588 1.0463 2.1182 44 1 1.0870 0.6165 2.5525 45 1 2.5040 1.0620 4.8010 46 1 3.1300 1.8433 7.9851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331531599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:49 Heat of formation + Delta-G solvation = -45.138628 kcal Electronic energy + Delta-G solvation = -30760.535863 eV Core-core repulsion = 26493.961471 eV Total energy + Delta-G solvation = -4266.574392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.29214 -40.60743 -40.06623 -38.37954 -37.83143 -36.34631 -35.87130 -34.90619 -33.31710 -32.30048 -30.49718 -28.60031 -27.95306 -27.70250 -26.94448 -25.68576 -23.51958 -22.77275 -21.69447 -21.15127 -20.44419 -19.93355 -19.54130 -17.98141 -17.84334 -17.71134 -17.21249 -16.83903 -16.71493 -16.37237 -16.12477 -15.82639 -15.52974 -15.30895 -15.20213 -15.09084 -14.49951 -14.40888 -13.88334 -13.77546 -13.67042 -13.60446 -13.56821 -13.38293 -13.20082 -13.10427 -12.92327 -12.82764 -12.54360 -12.45064 -12.16569 -12.09927 -11.82264 -11.53537 -11.29018 -10.86142 -10.74970 -10.35977 -10.03284 -9.59429 -9.46514 -9.08087 -8.49481 -5.97925 0.24551 1.20899 1.33869 1.36900 1.49687 1.61446 2.04493 2.20727 2.26178 2.49741 2.83842 2.97979 3.17685 3.53352 3.63012 3.81519 3.95160 4.01601 4.21564 4.22504 4.27704 4.33274 4.37787 4.45068 4.48624 4.58755 4.60219 4.63084 4.74971 4.88024 4.96078 4.99070 5.03183 5.10307 5.30944 5.37003 5.39268 5.57688 5.74010 5.91457 6.19372 6.46027 6.49897 6.57919 6.58822 6.73326 7.10722 7.34224 7.54446 8.11321 8.68128 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008774 B = 0.004036 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.430250 B = 6935.790907 C = 9138.466058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.063 3.937 3 H 0.094 0.906 4 C 0.133 3.867 5 N -0.589 5.589 6 C 0.053 3.947 7 C 0.600 3.400 8 O -0.565 6.565 9 C -0.090 4.090 10 C 0.027 3.973 11 N -0.515 5.515 12 C 0.384 3.616 13 O -0.445 6.445 14 N -0.433 5.433 15 C 0.069 3.931 16 N -0.667 5.667 17 C 0.070 3.930 18 C 0.436 3.564 19 O -0.620 6.620 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.266 1.266 28 H -0.275 1.275 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.238 0.762 38 H 0.425 0.575 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.337 0.663 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.395 0.605 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -0.297 -22.747 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.047 4.047 3 H 0.112 0.888 4 C 0.010 3.990 5 N -0.320 5.320 6 C -0.089 4.089 7 C 0.388 3.612 8 O -0.445 6.445 9 C -0.207 4.207 10 C -0.125 4.125 11 N -0.244 5.244 12 C 0.085 3.915 13 O -0.249 6.249 14 N -0.125 5.125 15 C -0.073 4.073 16 N -0.298 5.298 17 C -0.062 4.062 18 C 0.223 3.777 19 O -0.506 6.506 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.091 0.909 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.191 1.191 28 H -0.199 1.199 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.286 0.714 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.156 0.844 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.229 0.771 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.314 -0.878 -22.129 22.267 hybrid contribution -1.199 -0.836 1.529 2.115 sum 1.115 -1.714 -20.601 20.702 Atomic orbital electron populations 1.22374 0.95430 1.02195 1.03294 1.22218 0.93767 0.98561 0.90194 0.88823 1.21702 0.78010 1.01762 0.97509 1.47140 1.07311 1.20193 1.57365 1.22676 0.96612 0.90914 0.98662 1.16545 0.84261 0.83056 0.77305 1.90746 1.64804 1.37868 1.51103 1.20953 0.94433 0.94656 1.10616 1.24392 0.85876 1.00567 1.01710 1.70337 1.26839 1.09648 1.17622 1.20460 0.79835 0.91467 0.99771 1.84792 1.42084 1.56702 1.41317 1.45769 1.07032 1.18048 1.41695 1.22276 1.01789 0.83522 0.99677 1.60109 1.58615 1.08336 1.02767 1.21500 1.00489 0.95238 0.88997 1.21022 0.83313 0.88088 0.85257 1.90509 1.56295 1.18420 1.85401 1.41928 1.58622 1.12520 1.08201 1.19587 1.42228 0.95735 0.88678 0.90917 1.25992 0.97240 0.96637 1.01241 1.69663 1.48647 1.09602 1.28147 0.84978 0.78463 0.78024 0.77173 1.19811 1.19087 1.19945 0.93193 0.89020 0.93127 0.85542 0.91671 0.89801 0.86941 0.91071 0.74654 0.71363 0.87709 0.89103 0.89904 0.84416 0.88428 0.91995 0.77083 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.16 71.98 0.66 -2.32 16 2 C 0.06 1.30 2.89 44.92 0.13 1.43 16 3 H 0.09 1.66 7.80 -2.39 -0.02 1.64 16 4 C 0.13 2.40 5.18 86.38 0.45 2.84 16 5 N -0.59 -12.59 2.78 -851.84 -2.36 -14.95 16 6 C 0.05 0.64 8.63 127.77 1.10 1.74 16 7 C 0.60 18.64 6.85 86.36 0.59 19.23 16 8 O -0.57 -21.59 13.84 -4.46 -0.06 -21.65 16 9 C -0.09 -2.79 6.86 39.80 0.27 -2.52 16 10 C 0.03 0.72 9.93 84.13 0.84 1.56 16 11 N -0.51 -15.62 11.22 -313.65 -3.52 -19.13 16 12 C 0.38 11.42 9.01 179.99 1.62 13.04 16 13 O -0.44 -10.50 13.53 -84.86 -1.15 -11.65 16 14 N -0.43 -13.54 3.20 -651.99 -2.09 -15.63 16 15 C 0.07 1.98 10.77 127.77 1.38 3.36 16 16 N -0.67 -21.73 4.40 -495.56 -2.18 -23.91 16 17 C 0.07 2.50 5.97 85.56 0.51 3.01 16 18 C 0.44 21.90 7.82 87.66 0.69 22.58 16 19 O -0.62 -36.61 15.78 -3.06 -0.05 -36.66 16 20 N -0.57 -30.88 5.29 -306.98 -1.62 -32.50 16 21 C -0.33 -19.75 9.68 84.04 0.81 -18.94 16 22 H 0.07 4.65 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 24 N -0.92 -50.97 13.05 21.66 0.28 -50.69 16 25 Si 0.99 44.64 29.55 68.60 2.03 46.67 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 28 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 29 H 0.05 0.96 7.45 -2.39 -0.02 0.94 16 30 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.05 0.97 8.13 -2.39 -0.02 0.96 16 32 H 0.13 1.12 7.98 -2.39 -0.02 1.10 16 33 H 0.06 1.49 7.34 -2.39 -0.02 1.47 16 34 H 0.08 0.73 7.47 -2.39 -0.02 0.71 16 35 H 0.11 0.61 7.86 -2.39 -0.02 0.59 16 36 H 0.07 1.02 5.38 -2.39 -0.01 1.01 16 37 H 0.24 4.11 4.06 -2.91 -0.01 4.09 16 38 H 0.43 4.62 9.06 -74.06 -0.67 3.95 16 39 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 41 H 0.08 3.02 6.23 -2.39 -0.01 3.00 16 42 H 0.34 12.72 8.17 -89.69 -0.73 11.99 16 43 H 0.10 3.17 8.05 -2.39 -0.02 3.15 16 44 H 0.06 1.95 7.44 -2.39 -0.02 1.93 16 45 H 0.40 20.09 7.90 -92.71 -0.73 19.36 16 46 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -86.77 382.43 -2.28 -89.05 By element: Atomic # 1 Polarization: 47.27 SS G_CDS: -1.07 Total: 46.20 kcal Atomic # 6 Polarization: 35.35 SS G_CDS: 9.51 Total: 44.86 kcal Atomic # 7 Polarization: -145.33 SS G_CDS: -11.49 Total: -156.82 kcal Atomic # 8 Polarization: -68.71 SS G_CDS: -1.26 Total: -69.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -86.77 -2.28 -89.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331531599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.915 kcal (2) G-P(sol) polarization free energy of solvation -86.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds