Wall clock time and date at job start Sat Apr 11 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46956 * 2 1 4 4 C 1.50706 * 109.46636 * 240.00898 * 2 1 3 5 5 N 1.31271 * 120.05786 * 280.08860 * 4 2 1 6 6 C 1.32570 * 122.77433 * 180.02562 * 5 4 2 7 7 C 1.36206 * 121.87979 * 359.95985 * 6 5 4 8 8 C 1.40650 * 118.66653 * 0.02562 * 7 6 5 9 9 C 1.40234 * 122.23498 * 179.97438 * 8 7 6 10 10 C 1.36211 * 119.48189 * 180.02562 * 9 8 7 11 11 C 1.39376 * 121.02471 * 0.02562 * 10 9 8 12 12 C 1.36158 * 121.09249 * 359.97438 * 11 10 9 13 13 C 1.40386 * 120.05902 * 100.05226 * 4 2 1 14 14 N 1.46893 * 109.47816 * 120.00439 * 2 1 3 15 15 C 1.46899 * 110.99955 * 308.96077 * 14 2 1 16 16 C 1.53240 * 109.34182 * 172.74659 * 15 14 2 17 17 N 1.47078 * 108.52285 * 53.82217 * 16 15 14 18 18 C 1.34775 * 120.88108 * 128.83757 * 17 16 15 19 19 O 1.21694 * 120.00117 * 185.35806 * 18 17 16 20 20 C 1.46374 * 119.99885 * 5.36578 * 18 17 16 21 21 H 1.07995 * 120.00014 * 354.99203 * 20 18 17 22 22 C 1.40047 * 119.99978 * 174.99880 * 20 18 17 23 23 N 1.30673 * 119.99994 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 120.00141 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47279 * 89.99301 * 24 22 20 26 26 H 1.48500 * 109.47386 * 209.99946 * 24 22 20 27 27 H 1.48506 * 109.46741 * 329.99387 * 24 22 20 28 28 C 1.47084 * 118.23988 * 308.81902 * 17 16 15 29 29 C 1.46900 * 111.00359 * 184.65065 * 14 2 1 30 30 H 1.09002 * 109.46956 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46901 * 299.98780 * 1 2 3 32 32 H 1.08996 * 109.47776 * 59.99217 * 1 2 3 33 33 H 1.08008 * 119.05942 * 179.97438 * 6 5 4 34 34 H 1.08003 * 120.66605 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.25915 * 359.97438 * 9 8 7 36 36 H 1.08006 * 119.48799 * 180.02562 * 10 9 8 37 37 H 1.08009 * 119.45058 * 180.27025 * 11 10 9 38 38 H 1.08004 * 120.24793 * 179.97438 * 12 11 10 39 39 H 1.09007 * 109.48746 * 292.69936 * 15 14 2 40 40 H 1.08998 * 109.49410 * 52.77939 * 15 14 2 41 41 H 1.09004 * 109.62722 * 294.11602 * 16 15 14 42 42 H 1.08995 * 109.63289 * 173.53929 * 16 15 14 43 43 H 0.97003 * 119.99851 * 180.02562 * 23 22 20 44 44 H 1.09001 * 109.63007 * 291.47572 * 28 17 16 45 45 H 1.08996 * 109.62778 * 170.89283 * 28 17 16 46 46 H 1.08996 * 109.49356 * 307.21837 * 29 14 2 47 47 H 1.09008 * 109.49008 * 67.26861 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2307 5 7 2.0637 -2.0221 -1.2659 6 6 2.4951 -2.7016 -2.3193 7 6 2.9377 -2.0773 -3.4460 8 6 2.9341 -0.6713 -3.4840 9 6 3.3737 0.0478 -4.6049 10 6 3.3463 1.4094 -4.5808 11 6 2.8886 2.0989 -3.4593 12 6 2.4544 1.4336 -2.3536 13 6 2.4665 0.0299 -2.3417 14 7 2.0198 -0.6925 1.1993 15 6 1.3824 -0.1610 2.4113 16 6 1.7795 -1.0240 3.6137 17 7 3.2471 -1.1042 3.6669 18 6 3.9145 -0.8244 4.8039 19 8 5.1312 -0.8005 4.8052 20 6 3.1757 -0.5494 6.0373 21 1 2.0975 -0.4907 6.0193 22 6 3.8672 -0.3621 7.2407 23 7 5.1718 -0.4334 7.2626 24 14 2.9245 -0.0105 8.8146 25 1 2.5951 -1.2908 9.4910 26 1 3.7589 0.8249 9.7153 27 1 1.6699 0.7143 8.4887 28 6 3.9673 -1.4982 2.4465 29 6 3.4840 -0.6165 1.2900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 2.4953 -3.7811 -2.2831 34 1 3.2846 -2.6504 -4.2932 35 1 3.7319 -0.4740 -5.4800 36 1 3.6844 1.9633 -5.4441 37 1 2.8738 3.1789 -3.4694 38 1 2.1029 1.9818 -1.4918 39 1 1.7118 0.8650 2.5754 40 1 0.2992 -0.1809 2.2912 41 1 1.3621 -2.0245 3.5002 42 1 1.4041 -0.5696 4.5306 43 1 5.6506 -0.3041 8.0962 44 1 3.7601 -2.5443 2.2206 45 1 5.0383 -1.3572 2.5916 46 1 3.9250 -0.9667 0.3568 47 1 3.7842 0.4160 1.4693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364697324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:58 Heat of formation + Delta-G solvation = 17.854687 kcal Electronic energy + Delta-G solvation = -29393.813455 eV Core-core repulsion = 25540.819921 eV Total energy + Delta-G solvation = -3852.993534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.00307 -40.45766 -38.78756 -38.06011 -35.99308 -34.66043 -33.78409 -32.55271 -32.14181 -31.27721 -30.04903 -28.80477 -27.06665 -25.62482 -24.54068 -24.35778 -23.70481 -22.54282 -21.30013 -20.52454 -18.77292 -18.67241 -18.27695 -17.82408 -17.24757 -16.61314 -16.17428 -16.06371 -15.95430 -15.89044 -15.57304 -15.47549 -15.16610 -14.83531 -14.64532 -14.53707 -14.36074 -13.78460 -13.67870 -13.39466 -13.26292 -13.00140 -12.95391 -12.86242 -12.72377 -12.67562 -12.54028 -12.46236 -12.19221 -11.97709 -11.93184 -11.83075 -11.59710 -11.00195 -10.92563 -10.24228 -10.01632 -9.79404 -9.42609 -8.99901 -8.95219 -8.28596 -6.83546 -0.57703 -0.02064 0.96151 1.40825 1.42666 1.57816 2.15601 2.24279 2.45932 2.64567 2.92775 3.13222 3.21670 3.57866 3.61356 3.77685 3.87839 3.93845 4.04460 4.06233 4.09991 4.18360 4.25218 4.32374 4.34912 4.42830 4.48836 4.50570 4.57862 4.63664 4.72160 4.75535 4.81511 4.88435 4.91161 4.91766 5.01709 5.09536 5.16871 5.19943 5.29003 5.39161 5.47527 5.49181 5.70561 5.73979 5.93842 6.02300 6.08030 6.14694 6.40090 6.88138 7.18066 7.43693 8.46540 8.67834 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020860 B = 0.002590 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.962197 B =10806.705835 C =10867.022608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.128 3.872 3 H 0.062 0.938 4 C 0.168 3.832 5 N -0.483 5.483 6 C 0.058 3.942 7 C -0.157 4.157 8 C -0.046 4.046 9 C -0.117 4.117 10 C -0.101 4.101 11 C -0.118 4.118 12 C -0.108 4.108 13 C -0.123 4.123 14 N -0.516 5.516 15 C 0.046 3.954 16 C 0.125 3.875 17 N -0.646 5.646 18 C 0.540 3.460 19 O -0.636 6.636 20 C -0.566 4.566 21 H 0.097 0.903 22 C 0.027 3.973 23 N -0.825 5.825 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.244 1.244 28 C 0.131 3.869 29 C 0.073 3.927 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.137 0.863 39 H 0.026 0.974 40 H 0.119 0.881 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.273 0.727 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.414 3.968 -24.627 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.019 3.981 3 H 0.079 0.921 4 C 0.015 3.985 5 N -0.191 5.191 6 C -0.085 4.085 7 C -0.176 4.176 8 C -0.051 4.051 9 C -0.135 4.135 10 C -0.119 4.119 11 C -0.136 4.136 12 C -0.127 4.127 13 C -0.126 4.126 14 N -0.241 5.241 15 C -0.082 4.082 16 C 0.002 3.998 17 N -0.383 5.383 18 C 0.346 3.654 19 O -0.523 6.523 20 C -0.602 4.602 21 H 0.114 0.886 22 C -0.188 4.188 23 N -0.455 5.455 24 Si 0.817 3.183 25 H -0.186 1.186 26 H -0.200 1.200 27 H -0.167 1.167 28 C 0.006 3.994 29 C -0.056 4.056 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.183 0.817 34 H 0.182 0.818 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.155 0.845 39 H 0.045 0.955 40 H 0.137 0.863 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.987 2.876 -23.932 26.490 hybrid contribution 0.889 1.025 0.135 1.364 sum -10.098 3.901 -23.797 26.144 Atomic orbital electron populations 1.21872 0.90955 1.03227 1.03319 1.20624 0.97392 0.94048 0.86031 0.92058 1.21494 0.93661 0.89689 0.93626 1.67252 1.14311 1.09246 1.28241 1.22615 0.95847 1.01276 0.88785 1.22211 1.01130 0.93609 1.00653 1.18509 0.97880 0.94356 0.94377 1.21295 0.99772 0.94964 0.97463 1.21391 0.97139 0.94428 0.98988 1.21305 0.97653 1.01752 0.92892 1.21267 0.99467 0.92182 0.99834 1.19041 1.02578 0.95638 0.95316 1.61831 1.04363 1.56074 1.01844 1.22651 1.00980 0.95713 0.88890 1.21686 0.79947 0.99757 0.98388 1.48132 1.07070 1.72944 1.10131 1.18737 0.86651 0.76312 0.83656 1.90532 1.16493 1.59500 1.85805 1.21490 0.95019 1.51936 0.91752 0.88565 1.27046 0.95532 0.91715 1.04493 1.70210 1.09999 1.36752 1.28509 0.85019 0.78797 0.79149 0.75350 1.18638 1.20016 1.16705 1.21145 0.96124 0.97438 0.84647 1.22094 0.88965 0.97006 0.97573 0.91954 0.89934 0.90806 0.81657 0.81808 0.82718 0.82632 0.83201 0.84483 0.95533 0.86315 0.92207 0.89131 0.91671 0.92843 0.93081 0.91101 0.96494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.65 71.98 0.62 -2.07 16 2 C 0.13 3.20 2.14 44.17 0.09 3.29 16 3 H 0.06 1.46 6.00 -2.39 -0.01 1.44 16 4 C 0.17 4.40 4.46 43.17 0.19 4.59 16 5 N -0.48 -13.64 9.89 -183.62 -1.82 -15.46 16 6 C 0.06 1.33 11.07 84.11 0.93 2.26 16 7 C -0.16 -2.95 9.88 22.39 0.22 -2.73 16 8 C -0.05 -0.94 5.75 -21.28 -0.12 -1.07 16 9 C -0.12 -1.72 9.81 22.28 0.22 -1.51 16 10 C -0.10 -1.27 9.95 22.07 0.22 -1.05 16 11 C -0.12 -1.70 9.94 22.06 0.22 -1.49 16 12 C -0.11 -2.05 9.33 22.31 0.21 -1.84 16 13 C -0.12 -2.86 5.74 -21.31 -0.12 -2.98 16 14 N -0.52 -16.07 4.26 -874.40 -3.73 -19.80 16 15 C 0.05 1.39 5.20 86.38 0.45 1.84 16 16 C 0.13 4.79 6.47 86.35 0.56 5.35 16 17 N -0.65 -31.60 3.01 -823.02 -2.48 -34.08 16 18 C 0.54 32.72 7.62 86.36 0.66 33.38 16 19 O -0.64 -44.49 14.49 -4.33 -0.06 -44.55 16 20 C -0.57 -32.43 8.85 24.83 0.22 -32.21 16 21 H 0.10 4.87 5.75 -2.91 -0.02 4.85 16 22 C 0.03 1.52 5.50 85.30 0.47 1.98 16 23 N -0.83 -51.63 11.84 21.84 0.26 -51.37 16 24 Si 1.00 41.16 29.56 68.60 2.03 43.19 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.24 -9.18 7.11 99.48 0.71 -8.47 16 28 C 0.13 5.85 6.61 86.35 0.57 6.42 16 29 C 0.07 2.67 5.47 86.38 0.47 3.14 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.40 6.16 -2.39 -0.01 1.39 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.14 2.31 6.25 -2.91 -0.02 2.30 16 39 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.12 2.78 5.76 -2.39 -0.01 2.76 16 41 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.09 3.49 5.47 -2.39 -0.01 3.48 16 43 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 44 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 2.59 7.04 -2.39 -0.02 2.57 16 46 H 0.07 2.52 6.98 -2.39 -0.02 2.50 16 47 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -83.34 373.66 1.28 -82.06 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.99 Total: 24.70 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 6.08 Total: 15.31 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -7.76 Total: -120.71 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.06 Total: -44.55 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -83.34 1.28 -82.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364697324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.910 kcal (2) G-P(sol) polarization free energy of solvation -83.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds