Wall clock time and date at job start Sat Apr 11 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47560 * 2 1 4 4 C 1.50707 * 109.47056 * 120.00188 * 2 1 3 5 5 O 1.21283 * 119.99770 * 120.00010 * 4 2 1 6 6 N 1.34771 * 119.99736 * 299.99610 * 4 2 1 7 7 C 1.46503 * 119.99650 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.46767 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47837 * 294.99926 * 8 7 6 10 10 N 1.46502 * 109.47333 * 55.00285 * 8 7 6 11 11 C 1.36941 * 119.99946 * 204.99926 * 10 8 7 12 12 H 1.07999 * 120.00069 * 359.97438 * 11 10 8 13 13 C 1.38813 * 119.99955 * 179.97438 * 11 10 8 14 14 N 1.31616 * 119.99914 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99950 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47194 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47266 * 120.00396 * 15 13 11 18 18 H 1.48502 * 109.47408 * 239.99939 * 15 13 11 19 19 C 1.50703 * 109.47277 * 174.99849 * 8 7 6 20 20 C 1.38232 * 120.00243 * 279.73108 * 19 8 7 21 21 C 1.38237 * 120.00129 * 179.78311 * 20 19 8 22 22 C 1.38234 * 119.99939 * 0.44034 * 21 20 19 23 23 C 1.38231 * 119.99790 * 359.81015 * 22 21 20 24 24 C 1.38234 * 120.00224 * 359.97438 * 23 22 21 25 25 C 1.50705 * 109.46856 * 239.99715 * 2 1 3 26 26 C 1.38675 * 120.41661 * 120.00166 * 25 2 1 27 27 C 1.38628 * 118.42013 * 179.97438 * 26 25 2 28 28 C 1.38220 * 119.16326 * 359.97438 * 27 26 25 29 29 N 1.31857 * 120.76198 * 0.02562 * 28 27 26 30 30 C 1.31883 * 121.72627 * 359.97438 * 29 28 27 31 31 H 1.09004 * 109.46939 * 300.00359 * 1 2 3 32 32 H 1.09000 * 109.46999 * 59.99800 * 1 2 3 33 33 H 1.08995 * 109.47560 * 179.97438 * 1 2 3 34 34 H 0.96999 * 120.00126 * 0.02562 * 6 4 2 35 35 H 1.08995 * 109.47129 * 299.99884 * 7 6 4 36 36 H 1.08994 * 109.47242 * 60.00016 * 7 6 4 37 37 H 0.96994 * 120.00206 * 24.99377 * 10 8 7 38 38 H 0.97003 * 120.00036 * 179.97438 * 14 13 11 39 39 H 1.08003 * 119.99725 * 359.97438 * 20 19 8 40 40 H 1.08002 * 119.99814 * 180.27201 * 21 20 19 41 41 H 1.08002 * 119.99909 * 179.83546 * 22 21 20 42 42 H 1.08001 * 119.99999 * 179.97438 * 23 22 21 43 43 H 1.08006 * 119.99996 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.78542 * 359.70640 * 26 25 2 45 45 H 1.07996 * 120.41751 * 179.97438 * 27 26 25 46 46 H 1.07997 * 119.62169 * 180.02562 * 28 27 26 47 47 H 1.08007 * 119.61759 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1955 -0.9403 3.6507 8 6 1.6849 -0.2195 4.8999 9 1 2.1188 0.7794 4.9460 10 7 0.2248 -0.1154 4.8412 11 6 -0.4184 0.8831 5.5228 12 1 0.1507 1.5936 6.1040 13 6 -1.8019 0.9820 5.4668 14 7 -2.4954 0.1164 4.7581 15 14 -2.6793 2.3436 6.3971 16 1 -1.6802 3.1787 7.1110 17 1 -3.4368 3.1889 5.4395 18 1 -3.6185 1.7459 7.3800 19 6 2.0840 -0.9975 6.1273 20 6 1.3499 -2.1032 6.5138 21 6 1.7187 -2.8195 7.6372 22 6 2.8162 -2.4247 8.3791 23 6 3.5473 -1.3160 7.9955 24 6 3.1811 -0.6024 6.8697 25 6 2.0322 -0.7105 -1.2305 26 6 2.8300 -0.0450 -2.1490 27 6 3.2694 -0.7385 -3.2660 28 6 2.9009 -2.0611 -3.4257 29 7 2.1408 -2.6621 -2.5314 30 6 1.7046 -2.0336 -1.4572 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1488 0.5385 2.5435 35 1 1.8325 -1.9681 3.6509 36 1 3.2855 -0.9400 3.6505 37 1 -0.2863 -0.7537 4.3195 38 1 -3.4622 0.1853 4.7193 39 1 0.4900 -2.4092 5.9364 40 1 1.1477 -3.6859 7.9366 41 1 3.1027 -2.9828 9.2583 42 1 4.4045 -1.0074 8.5754 43 1 3.7526 0.2636 6.5698 44 1 3.0989 0.9903 -1.9999 45 1 3.8919 -0.2516 -4.0021 46 1 3.2394 -2.6086 -4.2929 47 1 1.0840 -2.5591 -0.7464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481372056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:15 Heat of formation + Delta-G solvation = 30.304944 kcal Electronic energy + Delta-G solvation = -28620.815726 eV Core-core repulsion = 24768.362076 eV Total energy + Delta-G solvation = -3852.453650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59244 -39.33401 -38.73382 -35.98115 -34.55412 -33.62160 -32.21742 -31.97513 -30.43558 -29.79338 -29.57895 -27.44586 -24.97552 -23.88813 -23.56749 -23.00536 -22.09268 -21.81034 -20.09376 -19.66614 -17.56216 -17.18170 -17.04635 -16.39300 -16.18319 -15.82320 -15.27880 -14.96077 -14.65083 -14.53740 -14.20910 -13.99463 -13.80524 -13.61112 -13.30038 -13.12176 -13.11643 -12.89748 -12.78100 -12.58741 -12.37450 -12.21786 -11.98965 -11.46690 -11.40221 -11.13893 -11.00376 -10.86326 -10.74498 -10.48820 -10.15176 -9.92133 -9.85263 -9.51278 -9.44889 -9.13152 -8.96921 -8.71008 -8.42937 -8.21319 -7.17795 -5.91455 -3.22775 1.08265 1.25514 1.83958 1.90629 2.85824 3.33863 3.41611 3.42865 3.43954 3.87328 4.28361 4.33779 4.46546 4.63445 4.67886 4.87606 4.94003 5.07794 5.14720 5.20638 5.22906 5.32223 5.39250 5.42545 5.51468 5.53168 5.58261 5.68678 5.75878 5.79669 5.83584 5.85364 6.01436 6.03266 6.07056 6.14413 6.23942 6.29079 6.38861 6.46433 6.60459 6.67104 6.76392 6.91410 6.99958 7.25666 7.50649 7.60143 7.84838 7.97886 8.24633 8.49054 9.38105 9.87517 10.24467 11.29784 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009875 B = 0.003196 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.635547 B = 8757.988323 C =10809.386313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 H 0.104 0.896 4 C 0.515 3.485 5 O -0.545 6.545 6 N -0.709 5.709 7 C 0.121 3.879 8 C 0.198 3.802 9 H 0.065 0.935 10 N -0.714 5.714 11 C -0.243 4.243 12 H 0.071 0.929 13 C -0.004 4.004 14 N -0.927 5.927 15 Si 0.904 3.096 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.292 1.292 19 C -0.082 4.082 20 C -0.083 4.083 21 C -0.128 4.128 22 C -0.134 4.134 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.112 4.112 26 C -0.071 4.071 27 C -0.178 4.178 28 C 0.091 3.909 29 N -0.487 5.487 30 C 0.135 3.865 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.411 0.589 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.152 0.848 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.765 0.094 -8.867 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 H 0.122 0.878 4 C 0.300 3.700 5 O -0.423 6.423 6 N -0.361 5.361 7 C -0.003 4.003 8 C 0.087 3.913 9 H 0.083 0.917 10 N -0.355 5.355 11 C -0.374 4.374 12 H 0.089 0.911 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.735 3.265 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.219 1.219 19 C -0.086 4.086 20 C -0.101 4.101 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.114 4.114 26 C -0.097 4.097 27 C -0.198 4.198 28 C -0.065 4.065 29 N -0.195 5.195 30 C -0.022 4.022 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.222 0.778 38 H 0.066 0.934 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.169 0.831 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.944 -1.326 -8.980 14.219 hybrid contribution -0.768 1.816 0.849 2.147 sum 10.176 0.490 -8.132 13.035 Atomic orbital electron populations 1.21829 0.91109 1.03554 1.03628 1.20231 0.98328 1.00015 0.90343 0.87753 1.20330 0.80388 0.84700 0.84562 1.90707 1.38363 1.26404 1.86854 1.45931 1.52885 1.32437 1.04875 1.21578 0.98356 0.96590 0.83811 1.19479 0.87213 0.95898 0.88693 0.91715 1.42461 0.98873 1.35361 1.58763 1.19225 0.89584 1.05297 1.23324 0.91077 1.24705 0.96280 0.98876 1.00256 1.69658 1.06163 1.37395 1.44206 0.86176 0.79710 0.81397 0.79205 1.20557 1.21832 1.21863 1.20973 0.93768 0.95296 0.98528 1.21007 0.98539 0.94356 0.96235 1.21113 0.97291 1.00116 0.96073 1.20984 0.96628 0.97727 0.99887 1.20983 1.00007 0.96374 0.97467 1.21008 0.97303 0.99858 0.95756 1.20383 0.99014 0.95942 0.96082 1.21456 0.94818 1.00111 0.93319 1.22048 1.02343 0.96364 0.99053 1.22743 0.94013 0.92321 0.97462 1.67722 1.10456 1.38550 1.02763 1.22555 0.95520 0.90955 0.93165 0.90250 0.91521 0.91669 0.75212 0.91563 0.91597 0.77833 0.93423 0.85893 0.86845 0.87082 0.87002 0.86783 0.84976 0.84991 0.83077 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.91 37.15 0.33 -1.34 16 2 C -0.07 -0.80 2.92 -92.92 -0.27 -1.07 16 3 H 0.10 1.01 7.93 -51.93 -0.41 0.60 16 4 C 0.52 7.80 7.03 -10.98 -0.08 7.73 16 5 O -0.55 -10.08 15.12 5.55 0.08 -10.00 16 6 N -0.71 -10.70 5.28 -60.30 -0.32 -11.02 16 7 C 0.12 1.96 5.21 -4.04 -0.02 1.94 16 8 C 0.20 3.49 2.65 -69.08 -0.18 3.31 16 9 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 10 N -0.71 -15.33 3.79 -54.55 -0.21 -15.54 16 11 C -0.24 -6.02 9.92 -15.06 -0.15 -6.17 16 12 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 13 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 14 N -0.93 -25.44 13.06 55.49 0.72 -24.72 16 15 Si 0.90 21.03 29.55 -169.99 -5.02 16.01 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 C -0.08 -1.44 4.92 -104.62 -0.52 -1.95 16 20 C -0.08 -1.50 9.33 -39.58 -0.37 -1.87 16 21 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 22 C -0.13 -1.96 10.05 -39.59 -0.40 -2.36 16 23 C -0.13 -1.89 10.05 -39.59 -0.40 -2.29 16 24 C -0.12 -1.90 9.67 -39.58 -0.38 -2.28 16 25 C -0.11 -1.41 4.40 -104.48 -0.46 -1.87 16 26 C -0.07 -0.75 9.81 -39.28 -0.39 -1.14 16 27 C -0.18 -1.75 10.11 -39.44 -0.40 -2.14 16 28 C 0.09 1.03 11.18 -17.55 -0.20 0.83 16 29 N -0.49 -6.94 10.36 -13.25 -0.14 -7.07 16 30 C 0.14 1.93 9.12 -17.55 -0.16 1.77 16 31 H 0.08 0.99 7.56 -51.93 -0.39 0.60 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.80 7.42 -51.93 -0.39 0.42 16 34 H 0.41 6.14 7.56 -40.82 -0.31 5.83 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.39 8.99 7.80 -40.82 -0.32 8.67 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.12 2.38 7.71 -52.48 -0.40 1.97 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.11 1.57 8.04 -52.48 -0.42 1.15 16 44 H 0.13 1.05 8.00 -52.49 -0.42 0.63 16 45 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.15 2.21 7.53 -52.48 -0.40 1.81 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -30.47 397.64 -10.21 -40.69 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -6.80 Total: 17.22 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -4.53 Total: -11.57 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.06 Total: -58.35 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.47 -10.21 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481372056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.991 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds