Wall clock time and date at job start Sat Apr 11 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47643 * 2 1 4 4 C 1.53000 * 109.47456 * 120.00828 * 2 1 3 5 5 N 1.46502 * 109.46622 * 294.99859 * 4 2 1 6 6 C 1.36938 * 119.99759 * 179.72664 * 5 4 2 7 7 H 1.08000 * 120.00089 * 0.27026 * 6 5 4 8 8 C 1.38813 * 119.99830 * 180.27032 * 6 5 4 9 9 N 1.31625 * 120.00070 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 120.00156 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46994 * 89.99428 * 10 8 6 12 12 H 1.48498 * 109.47052 * 209.99713 * 10 8 6 13 13 H 1.48496 * 109.46646 * 329.99755 * 10 8 6 14 14 C 1.53008 * 109.47050 * 240.00221 * 2 1 3 15 15 N 1.46505 * 109.46900 * 64.99759 * 14 2 1 16 16 C 1.34775 * 119.99960 * 180.02562 * 15 14 2 17 17 O 1.21573 * 119.99887 * 0.02562 * 16 15 14 18 18 C 1.47689 * 119.99848 * 180.02562 * 16 15 14 19 19 C 1.39467 * 120.20798 * 6.52816 * 18 16 15 20 20 C 1.37976 * 119.96623 * 180.02562 * 19 18 16 21 21 C 1.38484 * 120.40043 * 359.97438 * 20 19 18 22 22 C 1.38070 * 120.42294 * 0.02562 * 21 20 19 23 23 C 1.39176 * 120.01701 * 359.71815 * 22 21 20 24 24 C 1.48226 * 120.19580 * 180.29433 * 23 22 21 25 25 C 1.39820 * 120.91221 * 57.79600 * 24 23 22 26 26 C 1.38001 * 119.01302 * 179.77071 * 25 24 23 27 27 N 1.31908 * 120.88551 * 0.51517 * 26 25 24 28 28 C 1.31909 * 122.02735 * 359.73045 * 27 26 25 29 29 C 1.37994 * 120.88665 * 0.02562 * 28 27 26 30 30 H 1.09003 * 109.46700 * 299.99701 * 1 2 3 31 31 H 1.08993 * 109.47098 * 59.99573 * 1 2 3 32 32 H 1.09001 * 109.46903 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47542 * 174.99856 * 4 2 1 34 34 H 1.08999 * 109.47203 * 54.99207 * 4 2 1 35 35 H 0.96997 * 120.00118 * 359.97438 * 5 4 2 36 36 H 0.97002 * 120.00008 * 180.02562 * 9 8 6 37 37 H 1.08990 * 109.47256 * 184.99866 * 14 2 1 38 38 H 1.09001 * 109.46988 * 305.00741 * 14 2 1 39 39 H 0.96997 * 119.99658 * 0.02562 * 15 14 2 40 40 H 1.07992 * 120.01300 * 0.02562 * 19 18 16 41 41 H 1.08008 * 119.79523 * 179.97438 * 20 19 18 42 42 H 1.08009 * 119.78855 * 180.02562 * 21 20 19 43 43 H 1.08004 * 119.99185 * 180.02562 * 22 21 20 44 44 H 1.08006 * 120.49863 * 0.02562 * 25 24 23 45 45 H 1.08001 * 119.56120 * 180.22357 * 26 25 24 46 46 H 1.08000 * 119.56113 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.49316 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 1.6525 0.0351 2.4423 6 6 1.9968 -0.4238 3.6857 7 1 2.5578 -1.3412 3.7865 8 6 1.6248 0.2901 4.8166 9 7 1.9552 -0.1512 6.0118 10 14 0.6538 1.8765 4.6423 11 1 -0.7995 1.5718 4.6601 12 1 0.9831 2.7848 5.7699 13 1 1.0060 2.5337 3.3581 14 6 2.0400 -0.7212 -1.2493 15 7 1.6524 0.0354 -2.4425 16 6 1.9954 -0.4134 -3.6661 17 8 2.6262 -1.4465 -3.7797 18 6 1.6051 0.3497 -4.8688 19 6 1.0021 1.6008 -4.7410 20 6 0.6390 2.3092 -5.8679 21 6 0.8699 1.7860 -7.1292 22 6 1.4658 0.5490 -7.2746 23 6 1.8440 -0.1782 -6.1499 24 6 2.4899 -1.5037 -6.3015 25 6 3.6755 -1.6460 -7.0289 26 6 4.2458 -2.8976 -7.1411 27 7 3.6820 -3.9512 -6.5823 28 6 2.5614 -3.8614 -5.8923 29 6 1.9270 -2.6472 -5.7263 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1264 -0.7997 1.2054 34 1 1.6054 -1.7199 1.2950 35 1 1.1490 0.8592 2.3518 36 1 1.6949 0.3474 6.8020 37 1 3.1262 -0.7995 -1.2057 38 1 1.6053 -1.7197 -1.2953 39 1 1.1488 0.8595 -2.3517 40 1 0.8196 2.0148 -3.7604 41 1 0.1719 3.2776 -5.7657 42 1 0.5821 2.3492 -8.0047 43 1 1.6430 0.1478 -8.2616 44 1 4.1404 -0.7884 -7.4925 45 1 5.1635 -3.0170 -7.6978 46 1 2.1342 -4.7502 -5.4519 47 1 1.0095 -2.5811 -5.1604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482112850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:25 Heat of formation + Delta-G solvation = 41.260920 kcal Electronic energy + Delta-G solvation = -28161.158807 eV Core-core repulsion = 24309.180244 eV Total energy + Delta-G solvation = -3851.978564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99947 -39.69643 -38.66456 -37.00928 -34.74730 -33.71504 -32.76430 -31.65828 -31.24198 -30.44854 -30.11595 -26.84609 -25.85181 -24.39312 -24.03541 -23.29880 -22.17557 -21.55667 -20.76373 -20.13635 -18.46699 -17.58556 -17.15593 -16.51493 -16.23329 -16.04824 -15.62358 -15.50027 -15.12829 -15.08609 -14.56876 -14.47945 -14.02929 -13.80430 -13.77793 -13.61802 -13.52829 -13.20772 -13.10925 -12.61931 -12.51543 -12.24619 -12.24217 -11.85980 -11.72181 -11.49041 -11.09884 -10.83163 -10.74105 -10.67859 -10.46248 -10.14999 -9.73348 -9.61142 -9.58417 -9.54461 -9.28140 -9.06321 -8.93222 -8.86504 -7.26536 -5.79207 -3.15147 0.27350 0.65473 1.09720 1.31673 2.58139 2.94572 3.32877 3.34866 3.40046 3.41584 3.73472 4.04184 4.30657 4.32538 4.37489 4.50387 4.55603 4.74197 4.79845 4.84654 4.88857 4.94920 5.03024 5.07747 5.17234 5.20497 5.34696 5.46243 5.50810 5.60481 5.64876 5.67629 5.70115 5.75709 5.82737 5.84998 5.87757 5.92782 6.01721 6.14087 6.16981 6.28716 6.34393 6.39023 6.58617 6.61304 6.70127 7.29707 7.90091 7.96893 8.00868 8.39591 9.18234 9.90218 10.09749 11.39226 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.002345 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.573150 B =11939.950831 C =13421.889840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.128 3.872 15 N -0.719 5.719 16 C 0.548 3.452 17 O -0.521 6.521 18 C -0.118 4.118 19 C -0.085 4.085 20 C -0.121 4.121 21 C -0.094 4.094 22 C -0.111 4.111 23 C 0.002 3.998 24 C 0.001 3.999 25 C -0.159 4.159 26 C 0.091 3.909 27 N -0.484 5.484 28 C 0.093 3.907 29 C -0.100 4.100 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.360 0.640 36 H 0.260 0.740 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.398 0.602 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 3.907 -32.606 33.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.038 3.962 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.005 3.995 15 N -0.371 5.371 16 C 0.335 3.665 17 O -0.398 6.398 18 C -0.122 4.122 19 C -0.104 4.104 20 C -0.139 4.139 21 C -0.112 4.112 22 C -0.129 4.129 23 C 0.001 3.999 24 C -0.008 4.008 25 C -0.179 4.179 26 C -0.066 4.066 27 N -0.193 5.193 28 C -0.063 4.063 29 C -0.120 4.120 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.193 0.807 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.234 0.766 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.170 0.830 46 H 0.170 0.830 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.575 2.172 -32.543 32.717 hybrid contribution -1.344 2.615 0.406 2.968 sum -3.919 4.787 -32.137 32.727 Atomic orbital electron populations 1.21815 0.94731 1.02348 1.01174 1.21618 0.96643 1.00574 0.94612 0.90601 1.20544 0.97228 0.94235 0.84243 1.42681 1.68040 1.26958 1.02331 1.19065 1.29570 1.07091 0.81675 0.89160 1.24683 1.00810 0.98614 0.95102 1.69704 1.51262 1.40290 0.96898 0.86546 0.80439 0.84633 0.76886 1.21060 1.21693 1.20429 1.21423 1.00435 0.95267 0.82406 1.46018 1.57447 1.27787 1.05859 1.18194 0.80032 0.85135 0.83137 1.90865 1.39310 1.23574 1.86092 1.20028 1.03075 0.96076 0.92992 1.21319 0.96262 0.93291 0.99509 1.21209 1.00167 1.00357 0.92181 1.21309 0.96979 0.95120 0.97818 1.21218 0.99080 0.94675 0.97942 1.18715 0.96273 0.92988 0.91966 1.18837 0.94409 0.91875 0.95643 1.22063 0.96023 0.99252 1.00569 1.22544 0.99012 0.87991 0.97101 1.67560 1.10122 1.33380 1.08236 1.22543 0.91342 0.97091 0.95281 1.21918 1.00710 0.92599 0.96805 0.91791 0.93732 0.92264 0.95257 0.95068 0.80651 0.93032 0.90989 0.90932 0.76650 0.85188 0.85047 0.85115 0.85016 0.85184 0.83001 0.82989 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.94 37.16 0.33 -1.51 16 2 C -0.12 -1.59 2.46 -90.61 -0.22 -1.81 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.17 3.07 5.65 -4.04 -0.02 3.04 16 5 N -0.75 -17.49 5.13 -59.91 -0.31 -17.80 16 6 C -0.24 -6.89 10.47 -15.06 -0.16 -7.04 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 8 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 10 Si 0.88 21.77 27.74 -169.99 -4.71 17.06 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 14 C 0.13 1.60 5.07 -4.03 -0.02 1.58 16 15 N -0.72 -7.61 5.23 -61.30 -0.32 -7.93 16 16 C 0.55 6.54 7.50 -12.40 -0.09 6.45 16 17 O -0.52 -7.77 12.28 5.30 0.07 -7.70 16 18 C -0.12 -1.16 5.88 -104.69 -0.62 -1.77 16 19 C -0.09 -0.62 9.52 -39.22 -0.37 -0.99 16 20 C -0.12 -0.71 10.02 -39.59 -0.40 -1.10 16 21 C -0.09 -0.53 10.03 -39.55 -0.40 -0.92 16 22 C -0.11 -0.78 9.66 -39.29 -0.38 -1.16 16 23 C 0.00 0.02 5.46 -104.55 -0.57 -0.56 16 24 C 0.00 0.01 4.20 -104.61 -0.44 -0.43 16 25 C -0.16 -1.56 9.78 -39.08 -0.38 -1.95 16 26 C 0.09 0.95 11.17 -17.61 -0.20 0.75 16 27 N -0.48 -6.03 10.34 -13.34 -0.14 -6.17 16 28 C 0.09 1.09 11.17 -17.61 -0.20 0.89 16 29 C -0.10 -1.15 6.92 -39.08 -0.27 -1.42 16 30 H 0.06 0.94 7.18 -51.93 -0.37 0.56 16 31 H 0.04 0.44 7.18 -51.93 -0.37 0.07 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.36 8.06 4.71 -40.82 -0.19 7.86 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.40 3.29 5.73 -40.82 -0.23 3.06 16 40 H 0.13 0.70 6.46 -52.49 -0.34 0.36 16 41 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 42 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 43 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 45 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 47 H 0.13 1.37 7.82 -52.49 -0.41 0.96 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -35.12 387.48 -9.89 -45.00 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.59 Total: 8.18 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -4.50 Total: -7.93 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.01 Total: -60.45 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.07 Total: -7.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.12 -9.89 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482112850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.265 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds