Wall clock time and date at job start Sat Apr 11 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47643 * 2 1 4 4 C 1.53000 * 109.47456 * 120.00828 * 2 1 3 5 5 N 1.46502 * 109.46622 * 294.99859 * 4 2 1 6 6 C 1.36938 * 119.99759 * 179.72664 * 5 4 2 7 7 H 1.08000 * 120.00089 * 0.27026 * 6 5 4 8 8 C 1.38813 * 119.99830 * 180.27032 * 6 5 4 9 9 N 1.31625 * 120.00070 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 120.00156 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46994 * 89.99428 * 10 8 6 12 12 H 1.48498 * 109.47052 * 209.99713 * 10 8 6 13 13 H 1.48496 * 109.46646 * 329.99755 * 10 8 6 14 14 C 1.53008 * 109.47050 * 240.00221 * 2 1 3 15 15 N 1.46505 * 109.46900 * 64.99759 * 14 2 1 16 16 C 1.34775 * 119.99960 * 180.02562 * 15 14 2 17 17 O 1.21573 * 119.99887 * 0.02562 * 16 15 14 18 18 C 1.47689 * 119.99848 * 180.02562 * 16 15 14 19 19 C 1.39467 * 120.20798 * 6.52816 * 18 16 15 20 20 C 1.37976 * 119.96623 * 180.02562 * 19 18 16 21 21 C 1.38484 * 120.40043 * 359.97438 * 20 19 18 22 22 C 1.38070 * 120.42294 * 0.02562 * 21 20 19 23 23 C 1.39176 * 120.01701 * 359.71815 * 22 21 20 24 24 C 1.48226 * 120.19580 * 180.29433 * 23 22 21 25 25 C 1.39820 * 120.91221 * 57.79600 * 24 23 22 26 26 C 1.38001 * 119.01302 * 179.77071 * 25 24 23 27 27 N 1.31908 * 120.88551 * 0.51517 * 26 25 24 28 28 C 1.31909 * 122.02735 * 359.73045 * 27 26 25 29 29 C 1.37994 * 120.88665 * 0.02562 * 28 27 26 30 30 H 1.09003 * 109.46700 * 299.99701 * 1 2 3 31 31 H 1.08993 * 109.47098 * 59.99573 * 1 2 3 32 32 H 1.09001 * 109.46903 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47542 * 174.99856 * 4 2 1 34 34 H 1.08999 * 109.47203 * 54.99207 * 4 2 1 35 35 H 0.96997 * 120.00118 * 359.97438 * 5 4 2 36 36 H 0.97002 * 120.00008 * 180.02562 * 9 8 6 37 37 H 1.08990 * 109.47256 * 184.99866 * 14 2 1 38 38 H 1.09001 * 109.46988 * 305.00741 * 14 2 1 39 39 H 0.96997 * 119.99658 * 0.02562 * 15 14 2 40 40 H 1.07992 * 120.01300 * 0.02562 * 19 18 16 41 41 H 1.08008 * 119.79523 * 179.97438 * 20 19 18 42 42 H 1.08009 * 119.78855 * 180.02562 * 21 20 19 43 43 H 1.08004 * 119.99185 * 180.02562 * 22 21 20 44 44 H 1.08006 * 120.49863 * 0.02562 * 25 24 23 45 45 H 1.08001 * 119.56120 * 180.22357 * 26 25 24 46 46 H 1.08000 * 119.56113 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.49316 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 1.6525 0.0351 2.4423 6 6 1.9968 -0.4238 3.6857 7 1 2.5578 -1.3412 3.7865 8 6 1.6248 0.2901 4.8166 9 7 1.9552 -0.1512 6.0118 10 14 0.6538 1.8765 4.6423 11 1 -0.7995 1.5718 4.6601 12 1 0.9831 2.7848 5.7699 13 1 1.0060 2.5337 3.3581 14 6 2.0400 -0.7212 -1.2493 15 7 1.6524 0.0354 -2.4425 16 6 1.9954 -0.4134 -3.6661 17 8 2.6262 -1.4465 -3.7797 18 6 1.6051 0.3497 -4.8688 19 6 1.0021 1.6008 -4.7410 20 6 0.6390 2.3092 -5.8679 21 6 0.8699 1.7860 -7.1292 22 6 1.4658 0.5490 -7.2746 23 6 1.8440 -0.1782 -6.1499 24 6 2.4899 -1.5037 -6.3015 25 6 3.6755 -1.6460 -7.0289 26 6 4.2458 -2.8976 -7.1411 27 7 3.6820 -3.9512 -6.5823 28 6 2.5614 -3.8614 -5.8923 29 6 1.9270 -2.6472 -5.7263 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1264 -0.7997 1.2054 34 1 1.6054 -1.7199 1.2950 35 1 1.1490 0.8592 2.3518 36 1 1.6949 0.3474 6.8020 37 1 3.1262 -0.7995 -1.2057 38 1 1.6053 -1.7197 -1.2953 39 1 1.1488 0.8595 -2.3517 40 1 0.8196 2.0148 -3.7604 41 1 0.1719 3.2776 -5.7657 42 1 0.5821 2.3492 -8.0047 43 1 1.6430 0.1478 -8.2616 44 1 4.1404 -0.7884 -7.4925 45 1 5.1635 -3.0170 -7.6978 46 1 2.1342 -4.7502 -5.4519 47 1 1.0095 -2.5811 -5.1604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482112850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:24 Heat of formation + Delta-G solvation = 18.604248 kcal Electronic energy + Delta-G solvation = -28162.141274 eV Core-core repulsion = 24309.180244 eV Total energy + Delta-G solvation = -3852.961031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.74089 -40.53426 -39.35981 -38.27782 -36.15261 -34.63409 -34.09719 -32.79149 -32.16291 -31.71665 -30.76088 -27.93203 -27.34009 -25.27307 -24.71436 -24.22370 -23.69437 -22.33850 -21.71720 -21.28449 -19.75684 -18.96475 -17.94616 -17.38444 -17.14935 -16.81773 -16.61419 -16.46322 -16.13275 -15.94125 -15.74746 -15.58847 -15.39758 -14.98189 -14.71288 -14.57252 -14.34822 -14.21918 -14.16266 -13.89266 -13.67128 -13.51734 -13.21619 -12.87607 -12.75797 -12.57080 -12.30161 -12.22652 -12.07210 -12.00771 -11.78093 -11.72229 -11.38767 -10.99791 -10.50287 -10.39543 -10.27959 -9.96638 -9.84728 -9.58777 -9.31942 -8.03749 -5.38337 -0.35557 0.10909 0.30472 0.61797 1.36332 1.41973 1.49251 1.85269 2.06889 2.48011 2.78618 2.94254 3.27272 3.40469 3.51704 3.62617 3.63970 3.83044 3.90560 3.98525 4.01536 4.10366 4.11538 4.19918 4.28471 4.40031 4.44055 4.48938 4.62958 4.65797 4.70810 4.75955 4.88250 4.89470 4.90773 4.99289 5.07133 5.10712 5.18248 5.24702 5.31858 5.33957 5.43792 5.44724 5.45545 5.73985 5.81462 5.86797 6.19670 6.48599 7.06563 7.08480 7.16534 7.80982 8.02316 9.17909 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.002345 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.573150 B =11939.950831 C =13421.889840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.160 3.840 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.052 0.948 8 C -0.067 4.067 9 N -0.986 5.986 10 Si 0.960 3.040 11 H -0.275 1.275 12 H -0.296 1.296 13 H -0.246 1.246 14 C 0.140 3.860 15 N -0.708 5.708 16 C 0.545 3.455 17 O -0.559 6.559 18 C -0.140 4.140 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.085 4.085 22 C -0.113 4.113 23 C -0.018 4.018 24 C -0.005 4.005 25 C -0.162 4.162 26 C 0.081 3.919 27 N -0.512 5.512 28 C 0.075 3.925 29 C -0.112 4.112 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.021 0.979 34 H 0.024 0.976 35 H 0.369 0.631 36 H 0.258 0.742 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.412 0.588 40 H 0.149 0.851 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.177 0.823 46 H 0.161 0.839 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 7.560 -35.589 36.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.106 0.894 4 C 0.033 3.967 5 N -0.399 5.399 6 C -0.370 4.370 7 H 0.070 0.930 8 C -0.259 4.259 9 N -0.636 5.636 10 Si 0.786 3.214 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.170 1.170 14 C 0.015 3.985 15 N -0.361 5.361 16 C 0.334 3.666 17 O -0.439 6.439 18 C -0.143 4.143 19 C -0.104 4.104 20 C -0.135 4.135 21 C -0.103 4.103 22 C -0.131 4.131 23 C -0.019 4.019 24 C -0.013 4.013 25 C -0.181 4.181 26 C -0.076 4.076 27 N -0.222 5.222 28 C -0.080 4.080 29 C -0.132 4.132 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.203 0.797 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.250 0.750 40 H 0.166 0.834 41 H 0.179 0.821 42 H 0.180 0.820 43 H 0.164 0.836 44 H 0.172 0.828 45 H 0.194 0.806 46 H 0.178 0.822 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.225 5.842 -35.583 36.306 hybrid contribution -0.788 1.431 1.267 2.068 sum -5.012 7.274 -34.315 35.434 Atomic orbital electron populations 1.21807 0.93453 1.02407 1.02208 1.21396 0.97502 1.00391 0.92391 0.89411 1.20689 0.96834 0.94228 0.84975 1.42611 1.67975 1.27543 1.01816 1.19026 1.28256 1.05686 0.84016 0.93041 1.25606 1.02666 1.03081 0.94501 1.69907 1.53359 1.42367 0.97959 0.85342 0.78716 0.79378 0.77959 1.20105 1.22323 1.17005 1.21109 0.99465 0.95086 0.82795 1.45813 1.57366 1.28019 1.04889 1.18641 0.79255 0.84797 0.83938 1.90851 1.41095 1.25333 1.86647 1.19920 1.05263 0.97271 0.91847 1.21567 0.95446 0.92232 1.01151 1.21605 0.99120 1.01179 0.91631 1.21721 0.95172 0.94371 0.99056 1.21434 0.98825 0.95098 0.97737 1.18813 0.97492 0.92766 0.92877 1.19134 0.94654 0.92502 0.95044 1.22351 0.95677 0.99804 1.00281 1.23035 0.99731 0.87982 0.96860 1.67567 1.10718 1.34596 1.09316 1.22758 0.91643 0.97804 0.95765 1.21950 1.00860 0.93046 0.97338 0.93178 0.90173 0.92818 0.96089 0.95765 0.79713 0.93282 0.92396 0.91741 0.74990 0.83386 0.82137 0.82049 0.83631 0.82771 0.80573 0.82198 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.94 71.98 0.64 -2.61 16 2 C -0.10 -2.52 2.46 -10.79 -0.03 -2.55 16 3 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.16 5.91 5.65 86.38 0.49 6.40 16 5 N -0.75 -34.46 5.13 -343.45 -1.76 -36.22 16 6 C -0.24 -13.75 10.47 84.03 0.88 -12.87 16 7 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 8 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 9 N -0.99 -63.63 13.97 21.65 0.30 -63.33 16 10 Si 0.96 44.43 27.74 68.60 1.90 46.34 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.25 -9.96 6.52 99.48 0.65 -9.32 16 14 C 0.14 3.39 5.07 86.38 0.44 3.83 16 15 N -0.71 -13.75 5.23 -466.11 -2.44 -16.19 16 16 C 0.55 12.60 7.50 86.74 0.65 13.25 16 17 O -0.56 -17.03 12.28 -3.94 -0.05 -17.08 16 18 C -0.14 -2.49 5.88 -19.91 -0.12 -2.60 16 19 C -0.09 -0.94 9.52 22.50 0.21 -0.73 16 20 C -0.12 -0.84 10.02 22.27 0.22 -0.61 16 21 C -0.09 -0.59 10.03 22.29 0.22 -0.37 16 22 C -0.11 -1.26 9.66 22.46 0.22 -1.05 16 23 C -0.02 -0.32 5.46 -19.82 -0.11 -0.43 16 24 C 0.00 -0.11 4.20 -19.85 -0.08 -0.19 16 25 C -0.16 -3.07 9.78 22.60 0.22 -2.85 16 26 C 0.08 1.68 11.17 84.62 0.95 2.62 16 27 N -0.51 -13.20 10.34 -196.11 -2.03 -15.22 16 28 C 0.08 1.86 11.17 84.62 0.95 2.81 16 29 C -0.11 -2.67 6.92 22.60 0.16 -2.52 16 30 H 0.05 1.32 7.18 -2.39 -0.02 1.30 16 31 H 0.08 1.28 7.18 -2.39 -0.02 1.26 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.37 15.61 4.71 -92.71 -0.44 15.17 16 36 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.41 5.49 5.73 -92.71 -0.53 4.96 16 40 H 0.15 0.98 6.46 -2.91 -0.02 0.96 16 41 H 0.16 0.23 8.06 -2.91 -0.02 0.20 16 42 H 0.16 0.13 8.06 -2.91 -0.02 0.11 16 43 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 45 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 46 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 47 H 0.12 2.83 7.82 -2.91 -0.02 2.81 16 Total: -1.00 -79.76 387.48 2.27 -77.49 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: -0.03 Total: 28.17 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 6.38 Total: -3.96 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -5.93 Total: -130.96 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.05 Total: -17.08 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.34 kcal Total: -79.76 2.27 -77.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482112850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.099 kcal (2) G-P(sol) polarization free energy of solvation -79.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds