Wall clock time and date at job start Sat Apr 11 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47330 * 2 1 4 4 N 1.46501 * 109.47035 * 119.99438 * 2 1 3 5 5 C 1.36931 * 120.00522 * 274.72242 * 4 2 1 6 6 H 1.08008 * 119.99808 * 359.97438 * 5 4 2 7 7 C 1.38816 * 120.00667 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99599 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00423 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46865 * 90.00072 * 9 7 5 11 11 H 1.48493 * 109.47323 * 210.00408 * 9 7 5 12 12 H 1.48498 * 109.47001 * 330.00357 * 9 7 5 13 13 C 1.52997 * 109.47202 * 239.99406 * 2 1 3 14 14 H 1.08998 * 110.88655 * 299.30285 * 13 2 1 15 15 C 1.55159 * 111.00132 * 63.18317 * 13 2 1 16 16 C 1.54327 * 102.94209 * 153.57939 * 15 13 2 17 17 N 1.47019 * 107.26928 * 337.80171 * 16 15 13 18 18 C 1.34774 * 125.64523 * 178.97542 * 17 16 15 19 19 O 1.21568 * 119.99780 * 175.00933 * 18 17 16 20 20 C 1.47756 * 120.00277 * 355.01120 * 18 17 16 21 21 C 1.40603 * 120.26784 * 187.81933 * 20 18 17 22 22 N 1.30800 * 121.53503 * 179.97438 * 21 20 18 23 23 C 1.33825 * 121.72131 * 0.03109 * 22 21 20 24 24 C 1.40531 * 120.81716 * 179.97438 * 23 22 21 25 25 C 1.36133 * 119.80894 * 179.97438 * 24 23 22 26 26 C 1.39344 * 121.09389 * 0.04204 * 25 24 23 27 27 C 1.36140 * 120.82948 * 359.95584 * 26 25 24 28 28 C 1.40545 * 119.62030 * 0.02562 * 27 26 25 29 29 C 1.39011 * 120.26923 * 7.54292 * 20 18 17 30 30 C 1.47466 * 108.72605 * 358.98126 * 17 16 15 31 31 H 1.09000 * 109.47252 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47337 * 300.00420 * 1 2 3 33 33 H 1.09003 * 109.47196 * 60.00033 * 1 2 3 34 34 H 0.97004 * 120.00080 * 95.00293 * 4 2 1 35 35 H 0.96993 * 120.00344 * 180.02562 * 8 7 5 36 36 H 1.09009 * 110.71522 * 271.93763 * 15 13 2 37 37 H 1.08996 * 110.72278 * 35.03191 * 15 13 2 38 38 H 1.08999 * 109.88108 * 97.22624 * 16 15 13 39 39 H 1.09002 * 109.87639 * 218.23519 * 16 15 13 40 40 H 1.07989 * 119.23241 * 359.97438 * 21 20 18 41 41 H 1.07995 * 120.09413 * 359.97438 * 24 23 22 42 42 H 1.08005 * 119.45030 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.58108 * 179.97438 * 26 25 24 44 44 H 1.08003 * 120.18370 * 180.02562 * 27 26 25 45 45 H 1.08005 * 121.01278 * 0.02562 * 29 20 18 46 46 H 1.09006 * 110.34431 * 265.25468 * 30 17 16 47 47 H 1.08991 * 110.40753 * 142.91448 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1545 -0.0060 2.3744 6 1 1.9023 1.0431 2.4216 7 6 2.6167 -0.6604 3.5080 8 7 2.9245 -1.9388 3.4503 9 14 2.8031 0.2736 5.1149 10 1 1.5367 0.1898 5.8860 11 1 3.9067 -0.3232 5.9092 12 1 3.1140 1.6968 4.8270 13 6 2.0400 -0.7214 -1.2491 14 1 1.6996 -1.7567 -1.2662 15 6 1.6092 0.0270 -2.5383 16 6 2.7009 -0.3749 -3.5524 17 7 3.8814 -0.7905 -2.7810 18 6 5.0433 -1.2334 -3.3009 19 8 5.9870 -1.4650 -2.5703 20 6 5.1702 -1.4375 -4.7587 21 6 6.3174 -2.0520 -5.2911 22 7 6.4553 -2.2454 -6.5774 23 6 5.5138 -1.8685 -7.4506 24 6 5.6821 -2.0851 -8.8288 25 6 4.7109 -1.6940 -9.6989 26 6 3.5455 -1.0780 -9.2470 27 6 3.3459 -0.8510 -7.9196 28 6 4.3274 -1.2420 -6.9928 29 6 4.1539 -1.0289 -5.6146 30 6 3.5842 -0.6429 -1.3442 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6317 1.1528 35 1 3.2471 -2.3962 4.2425 36 1 0.6288 -0.3129 -2.8721 37 1 1.6075 1.1048 -2.3762 38 1 2.3489 -1.2035 -4.1669 39 1 2.9500 0.4765 -4.1857 40 1 7.1028 -2.3716 -4.6225 41 1 6.5793 -2.5606 -9.1967 42 1 4.8464 -1.8629 -10.7570 43 1 2.7910 -0.7772 -9.9588 44 1 2.4385 -0.3731 -7.5809 45 1 3.2602 -0.5580 -5.2323 46 1 3.9380 0.3222 -0.9812 47 1 4.0409 -1.4534 -0.7763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672227856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:54 Heat of formation + Delta-G solvation = 54.835820 kcal Electronic energy + Delta-G solvation = -28532.144271 eV Core-core repulsion = 24680.754359 eV Total energy + Delta-G solvation = -3851.389912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36236 -39.96236 -38.01057 -37.05924 -35.44677 -33.95685 -32.48894 -31.13495 -30.65689 -30.36653 -28.78411 -28.13835 -25.37723 -24.50001 -23.94639 -23.12004 -22.58716 -21.51050 -20.08282 -19.72453 -18.76700 -17.55762 -17.31416 -16.88466 -16.27821 -16.09188 -15.59686 -15.03198 -14.87259 -14.59587 -14.43311 -14.22099 -13.91140 -13.83522 -13.76354 -13.38386 -13.12325 -12.82791 -12.70403 -12.22513 -12.17450 -12.11305 -12.02408 -11.84723 -11.45245 -11.35424 -10.95031 -10.88781 -10.77479 -10.62931 -10.59866 -10.26466 -10.23213 -9.90795 -9.63998 -9.61451 -9.15777 -8.92412 -8.67537 -8.63240 -6.97806 -5.76370 -3.05750 -0.11586 0.32326 1.51494 2.30270 2.86142 3.06535 3.43842 3.49069 3.51111 3.79139 3.90518 4.14530 4.21891 4.40295 4.42855 4.48039 4.58855 4.62043 4.71973 4.79295 4.83750 4.89797 5.10965 5.16339 5.26405 5.33711 5.43135 5.52360 5.53821 5.58256 5.71678 5.79340 5.82829 5.85955 5.90707 5.94809 6.00306 6.11101 6.12764 6.22902 6.28752 6.34531 6.43685 6.50093 6.58221 6.80921 7.03128 7.43122 7.59077 7.69595 8.08513 8.41461 9.52940 10.09071 10.43302 11.46054 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022327 B = 0.002306 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.805720 B =12139.948358 C =13150.152218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.127 4.127 16 C 0.087 3.913 17 N -0.610 5.610 18 C 0.573 3.427 19 O -0.527 6.527 20 C -0.178 4.178 21 C 0.185 3.815 22 N -0.479 5.479 23 C 0.138 3.862 24 C -0.098 4.098 25 C -0.094 4.094 26 C -0.122 4.122 27 C -0.087 4.087 28 C -0.113 4.113 29 C -0.054 4.054 30 C 0.120 3.880 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.173 0.827 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.177 0.823 46 H 0.075 0.925 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 2.729 -28.182 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.165 4.165 16 C -0.036 4.036 17 N -0.344 5.344 18 C 0.361 3.639 19 O -0.404 6.404 20 C -0.184 4.184 21 C 0.012 3.988 22 N -0.186 5.186 23 C 0.017 3.983 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.140 4.140 27 C -0.106 4.106 28 C -0.115 4.115 29 C -0.080 4.080 30 C -0.001 4.001 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.190 0.810 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.193 0.807 46 H 0.093 0.907 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.697 2.297 -28.094 28.197 hybrid contribution -0.635 0.505 1.230 1.474 sum -1.332 2.801 -26.864 27.043 Atomic orbital electron populations 1.22445 0.99051 1.00911 1.00008 1.20148 0.91942 0.95156 0.85298 0.93261 1.42414 1.78143 1.10662 1.05335 1.19186 1.36817 0.93700 0.87334 0.91228 1.24737 1.02082 0.95949 0.98064 1.69651 1.50776 1.08571 1.28882 0.86221 0.77262 0.78834 0.84041 1.21810 1.21795 1.20793 1.22692 0.93768 1.00641 0.95097 0.89932 1.22755 0.97483 1.01617 0.94637 1.22555 0.86679 0.98991 0.95383 1.48477 1.12695 1.64060 1.09132 1.17627 0.81834 0.77702 0.86755 1.90835 1.37133 1.51475 1.60950 1.21008 0.97711 1.05201 0.94449 1.23126 0.94780 0.89849 0.91093 1.68091 1.29043 1.18549 1.02923 1.19109 0.89908 0.94984 0.94253 1.20852 1.00109 1.00236 0.90474 1.20987 0.93348 0.96913 1.00161 1.20947 0.97885 0.99316 0.95832 1.21061 0.98002 0.98583 0.92977 1.18860 0.96438 1.02011 0.94150 1.23508 0.99148 0.93343 0.91985 1.22348 0.95584 1.03333 0.78793 0.93494 0.92730 0.94399 0.78249 0.93486 0.89767 0.90023 0.90720 0.90747 0.80978 0.84545 0.85139 0.85274 0.84903 0.80695 0.90708 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.31 37.16 0.35 -2.30 16 2 C 0.18 3.30 2.40 -67.93 -0.16 3.13 16 3 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 4 N -0.72 -17.15 4.90 -53.43 -0.26 -17.41 16 5 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 9 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 C -0.10 -1.47 2.64 -88.47 -0.23 -1.70 16 14 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 15 C -0.13 -1.26 5.44 -24.89 -0.14 -1.39 16 16 C 0.09 0.81 4.87 -3.06 -0.01 0.80 16 17 N -0.61 -8.42 3.33 -173.32 -0.58 -8.99 16 18 C 0.57 8.78 7.81 -12.37 -0.10 8.68 16 19 O -0.53 -10.11 16.67 5.31 0.09 -10.02 16 20 C -0.18 -2.25 5.88 -104.83 -0.62 -2.87 16 21 C 0.19 2.38 10.73 -17.10 -0.18 2.20 16 22 N -0.48 -6.12 10.30 -10.67 -0.11 -6.23 16 23 C 0.14 1.56 6.61 -84.79 -0.56 1.00 16 24 C -0.10 -0.86 9.97 -39.47 -0.39 -1.25 16 25 C -0.09 -0.61 9.94 -39.93 -0.40 -1.01 16 26 C -0.12 -0.74 9.96 -39.92 -0.40 -1.13 16 27 C -0.09 -0.62 9.77 -39.47 -0.39 -1.00 16 28 C -0.11 -1.11 5.74 -106.82 -0.61 -1.72 16 29 C -0.05 -0.54 8.44 -38.43 -0.32 -0.87 16 30 C 0.12 1.96 6.15 -2.50 -0.02 1.95 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.48 7.38 -51.93 -0.38 0.10 16 34 H 0.38 9.82 7.80 -40.82 -0.32 9.51 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.08 0.68 8.12 -51.92 -0.42 0.26 16 37 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 38 H 0.07 0.58 6.67 -51.93 -0.35 0.24 16 39 H 0.07 0.55 6.80 -51.93 -0.35 0.20 16 40 H 0.17 2.12 7.65 -52.49 -0.40 1.72 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 45 H 0.18 1.30 2.88 -54.69 -0.16 1.15 16 46 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 47 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -33.64 382.52 -10.38 -44.03 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.56 Total: 7.27 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -4.43 Total: -4.50 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.22 Total: -59.83 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.64 -10.38 -44.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672227856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.861 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds