Wall clock time and date at job start Sat Apr 11 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47212 * 2 1 4 4 N 1.46494 * 109.47404 * 120.00494 * 2 1 3 5 5 C 1.36936 * 119.99847 * 275.27186 * 4 2 1 6 6 H 1.08000 * 120.00109 * 359.72332 * 5 4 2 7 7 C 1.38818 * 120.00186 * 179.72427 * 5 4 2 8 8 N 1.31612 * 120.00056 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99624 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47544 * 90.00183 * 9 7 5 11 11 H 1.48507 * 109.47065 * 209.99989 * 9 7 5 12 12 H 1.48502 * 109.47149 * 329.99594 * 9 7 5 13 13 C 1.53010 * 109.46870 * 240.00299 * 2 1 3 14 14 H 1.08999 * 110.88268 * 299.04581 * 13 2 1 15 15 C 1.55152 * 111.00200 * 175.16050 * 13 2 1 16 16 C 1.54322 * 102.94007 * 206.42083 * 15 13 2 17 17 N 1.47019 * 107.27118 * 22.20020 * 16 15 13 18 18 C 1.34777 * 125.65041 * 181.10244 * 17 16 15 19 19 O 1.21563 * 120.00413 * 185.01970 * 18 17 16 20 20 C 1.47766 * 119.99968 * 5.02554 * 18 17 16 21 21 C 1.40594 * 120.26732 * 171.88143 * 20 18 17 22 22 N 1.30798 * 121.53559 * 179.76405 * 21 20 18 23 23 C 1.33825 * 121.71881 * 0.48861 * 22 21 20 24 24 C 1.40521 * 120.81114 * 179.73324 * 23 22 21 25 25 C 1.36135 * 119.81321 * 180.02562 * 24 23 22 26 26 C 1.39339 * 121.08678 * 0.02562 * 25 24 23 27 27 C 1.36145 * 120.83581 * 359.97438 * 26 25 24 28 28 C 1.40545 * 119.62049 * 359.97438 * 27 26 25 29 29 C 1.39014 * 120.26299 * 352.15176 * 20 18 17 30 30 C 1.47427 * 108.70581 * 1.05511 * 17 16 15 31 31 H 1.08998 * 109.47308 * 184.94741 * 1 2 3 32 32 H 1.09001 * 109.46562 * 304.94496 * 1 2 3 33 33 H 1.08996 * 109.47363 * 64.94211 * 1 2 3 34 34 H 0.96997 * 120.00298 * 94.99913 * 4 2 1 35 35 H 0.97003 * 120.00206 * 180.02562 * 8 7 5 36 36 H 1.08994 * 110.72506 * 324.78994 * 15 13 2 37 37 H 1.09003 * 110.72117 * 87.88642 * 15 13 2 38 38 H 1.09007 * 109.88216 * 141.61441 * 16 15 13 39 39 H 1.08996 * 109.88735 * 262.77599 * 16 15 13 40 40 H 1.07995 * 119.23268 * 359.97438 * 21 20 18 41 41 H 1.07998 * 120.09460 * 0.03318 * 24 23 22 42 42 H 1.07995 * 119.45798 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.58432 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.18955 * 180.02562 * 27 26 25 45 45 H 1.07994 * 121.02203 * 359.96171 * 29 20 18 46 46 H 1.08997 * 110.36718 * 217.04019 * 30 17 16 47 47 H 1.08993 * 110.36577 * 94.70790 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1439 -0.0090 2.3770 6 1 1.8871 1.0389 2.4256 7 6 2.6012 -0.6648 3.5118 8 7 2.7214 -0.0097 4.6470 9 14 3.0461 -2.4771 3.4276 10 1 4.4806 -2.6187 3.0705 11 1 2.8002 -3.1091 4.7488 12 1 2.2111 -3.1444 2.3967 13 6 2.0399 -0.7212 -1.2494 14 1 1.7033 -1.7578 -1.2642 15 6 3.5860 -0.6370 -1.3479 16 6 3.8428 -0.7583 -2.8648 17 7 2.6043 -0.3611 -3.5502 18 6 2.4134 -0.3509 -4.8844 19 8 1.3766 0.0837 -5.3468 20 6 3.4644 -0.8683 -5.7850 21 6 3.2087 -1.0194 -7.1592 22 7 4.1222 -1.4706 -7.9795 23 6 5.3412 -1.8198 -7.5518 24 6 6.3064 -2.3076 -8.4490 25 6 7.5401 -2.6574 -7.9918 26 6 7.8669 -2.5409 -6.6423 27 6 6.9590 -2.0725 -5.7423 28 6 5.6759 -1.7010 -6.1792 29 6 4.7122 -1.2147 -5.2794 30 6 1.6052 0.0232 -2.5365 31 1 -0.3634 -1.0238 0.0886 32 1 -0.3632 0.5887 0.8424 33 1 -0.3634 0.4352 -0.9309 34 1 2.2491 -1.6318 1.1524 35 1 3.0413 -0.4679 5.4399 36 1 3.9449 0.3208 -0.9714 37 1 4.0524 -1.4612 -0.8081 38 1 4.6572 -0.0953 -3.1571 39 1 4.0922 -1.7888 -3.1174 40 1 2.2365 -0.7537 -7.5472 41 1 6.0703 -2.4047 -9.4984 42 1 8.2774 -3.0320 -8.6863 43 1 8.8530 -2.8250 -6.3060 44 1 7.2235 -1.9861 -4.6988 45 1 4.9345 -1.1122 -4.2276 46 1 0.6102 -0.2990 -2.8433 47 1 1.6232 1.1011 -2.3757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672227857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:55 Heat of formation + Delta-G solvation = 37.222245 kcal Electronic energy + Delta-G solvation = -28566.418388 eV Core-core repulsion = 24714.264695 eV Total energy + Delta-G solvation = -3852.153694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21130 -40.98716 -39.21088 -37.85467 -37.05453 -34.97636 -34.09216 -32.40382 -31.60264 -31.25605 -31.01912 -28.96978 -26.63285 -25.70263 -25.06918 -23.97766 -23.43004 -22.56420 -21.34844 -21.08323 -19.72302 -19.37305 -18.35262 -17.99018 -17.35574 -17.15889 -16.69481 -16.40428 -15.93229 -15.56615 -15.39279 -15.16189 -15.12432 -14.92995 -14.73334 -14.58256 -14.42441 -14.13559 -13.97538 -13.71559 -13.51580 -13.46192 -12.84485 -12.77180 -12.72107 -12.67590 -12.43390 -12.35207 -12.01009 -11.89113 -11.71874 -11.68451 -11.59101 -11.40256 -11.30732 -10.92678 -10.53121 -9.97406 -9.71855 -9.31935 -9.27230 -7.96094 -5.29051 -0.84892 -0.43590 0.82055 1.41975 1.45170 1.46106 1.53324 1.74957 2.15252 2.54051 3.03504 3.08233 3.28463 3.35603 3.42032 3.47469 3.61133 3.68487 3.77333 3.83369 3.94339 4.08531 4.18182 4.23124 4.30394 4.32513 4.41356 4.46717 4.56115 4.58032 4.67349 4.69084 4.69675 4.84901 4.93178 4.95298 5.01582 5.05256 5.12196 5.15391 5.29137 5.34246 5.36890 5.41422 5.46796 5.58045 5.84141 5.84515 6.27386 6.31168 6.75540 6.91773 7.14689 7.90246 8.10209 9.25702 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015279 B = 0.002575 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.154593 B =10872.283049 C =12373.634718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.187 3.813 3 H 0.049 0.951 4 N -0.745 5.745 5 C -0.220 4.220 6 H 0.054 0.946 7 C -0.067 4.067 8 N -0.988 5.988 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.306 1.306 12 H -0.251 1.251 13 C -0.097 4.097 14 H 0.089 0.911 15 C -0.120 4.120 16 C 0.084 3.916 17 N -0.608 5.608 18 C 0.577 3.423 19 O -0.574 6.574 20 C -0.202 4.202 21 C 0.171 3.829 22 N -0.500 5.500 23 C 0.115 3.885 24 C -0.123 4.123 25 C -0.077 4.077 26 C -0.118 4.118 27 C -0.089 4.089 28 C -0.128 4.128 29 C -0.035 4.035 30 C 0.119 3.881 31 H 0.049 0.951 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.366 0.634 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.166 0.834 41 H 0.140 0.860 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.200 0.800 46 H 0.076 0.924 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.189 -7.468 -26.078 29.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.079 3.921 3 H 0.067 0.933 4 N -0.388 5.388 5 C -0.351 4.351 6 H 0.072 0.928 7 C -0.258 4.258 8 N -0.639 5.639 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.233 1.233 12 H -0.176 1.176 13 C -0.117 4.117 14 H 0.107 0.893 15 C -0.158 4.158 16 C -0.037 4.037 17 N -0.339 5.339 18 C 0.367 3.633 19 O -0.455 6.455 20 C -0.207 4.207 21 C -0.003 4.003 22 N -0.207 5.207 23 C -0.006 4.006 24 C -0.142 4.142 25 C -0.097 4.097 26 C -0.136 4.136 27 C -0.108 4.108 28 C -0.130 4.130 29 C -0.059 4.059 30 C -0.004 4.004 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.200 0.800 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.184 0.816 41 H 0.158 0.842 42 H 0.179 0.821 43 H 0.180 0.820 44 H 0.180 0.820 45 H 0.216 0.784 46 H 0.095 0.905 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.553 -7.181 -27.200 30.411 hybrid contribution -0.249 -0.510 1.434 1.542 sum 11.304 -7.690 -25.766 29.169 Atomic orbital electron populations 1.22375 0.97999 1.01216 1.00702 1.20253 0.92370 0.95123 0.84397 0.93318 1.42678 1.79988 1.09539 1.06611 1.18967 1.34633 0.94236 0.87276 0.92792 1.25486 1.02727 1.02493 0.95120 1.69892 1.55139 1.37780 1.01102 0.85424 0.78909 0.80759 0.76732 1.19773 1.23322 1.17561 1.22511 0.96483 1.00176 0.92562 0.89293 1.22671 0.94993 1.04375 0.93720 1.22849 0.86608 1.01734 0.92505 1.48412 1.16103 1.65045 1.04388 1.17880 0.86319 0.78201 0.80877 1.90768 1.29927 1.49051 1.75799 1.20735 0.95995 1.08266 0.95720 1.23051 0.98377 0.90452 0.88399 1.68052 1.01738 1.12838 1.38121 1.19537 0.91853 0.96738 0.92438 1.21041 0.92941 1.00249 0.99972 1.21431 0.95817 0.95513 0.96917 1.21426 1.01146 0.98113 0.92878 1.21466 0.90580 0.96598 1.02111 1.19106 0.97020 1.03191 0.93663 1.23769 0.90275 0.88673 1.03231 1.22240 0.92351 0.99674 0.86097 0.93214 0.94921 0.91296 0.80043 0.93590 0.90413 0.88843 0.88041 0.88220 0.81645 0.84216 0.82057 0.81979 0.81998 0.78420 0.90547 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 9.38 71.98 0.68 -4.52 16 2 C 0.19 6.15 2.40 44.99 0.11 6.26 16 3 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 4 N -0.74 -30.97 4.71 -322.93 -1.52 -32.49 16 5 C -0.22 -11.74 10.41 84.03 0.87 -10.86 16 6 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 7 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 8 N -0.99 -61.70 13.97 21.65 0.30 -61.40 16 9 Si 0.95 42.87 27.74 68.60 1.90 44.77 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.25 -10.04 6.52 99.48 0.65 -9.39 16 13 C -0.10 -2.39 2.64 -9.40 -0.02 -2.41 16 14 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.12 -2.45 6.21 31.78 0.20 -2.25 16 16 C 0.08 1.30 4.87 86.73 0.42 1.72 16 17 N -0.61 -13.43 3.33 -820.12 -2.73 -16.15 16 18 C 0.58 15.01 7.81 86.76 0.68 15.69 16 19 O -0.57 -19.01 16.67 -3.91 -0.07 -19.08 16 20 C -0.20 -4.51 5.88 -20.00 -0.12 -4.62 16 21 C 0.17 4.12 10.73 85.42 0.92 5.04 16 22 N -0.50 -12.16 10.30 -187.69 -1.93 -14.10 16 23 C 0.11 2.37 6.61 40.27 0.27 2.63 16 24 C -0.12 -1.88 9.97 22.34 0.22 -1.66 16 25 C -0.08 -0.71 9.94 22.04 0.22 -0.49 16 26 C -0.12 -0.92 9.96 22.05 0.22 -0.70 16 27 C -0.09 -0.92 9.77 22.35 0.22 -0.70 16 28 C -0.13 -2.15 5.74 -21.28 -0.12 -2.28 16 29 C -0.03 -0.57 8.44 23.02 0.19 -0.38 16 30 C 0.12 2.83 5.36 86.86 0.47 3.30 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.81 7.09 -2.39 -0.02 1.79 16 34 H 0.37 14.45 5.66 -92.71 -0.52 13.93 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.08 1.76 8.03 -2.39 -0.02 1.74 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.10 1.15 6.79 -2.38 -0.02 1.13 16 39 H 0.10 1.15 6.68 -2.39 -0.02 1.13 16 40 H 0.17 3.90 7.65 -2.91 -0.02 3.88 16 41 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.16 0.47 8.06 -2.91 -0.02 0.44 16 43 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 44 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 45 H 0.20 2.16 2.89 -4.79 -0.01 2.15 16 46 H 0.08 1.92 7.88 -2.39 -0.02 1.90 16 47 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 Total: -1.00 -75.54 379.01 2.25 -73.29 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.41 Total: 24.73 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.88 Total: 0.44 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -5.88 Total: -124.15 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.07 Total: -19.08 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.90 Total: 44.77 kcal Total: -75.54 2.25 -73.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672227857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.511 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds