Wall clock time and date at job start Sat Apr 11 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47229 * 2 1 4 4 N 1.46493 * 109.47462 * 239.99701 * 2 1 3 5 5 C 1.36931 * 120.00128 * 84.99751 * 4 2 1 6 6 H 1.08002 * 120.00173 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00144 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00342 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99994 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47092 * 90.00065 * 9 7 5 11 11 H 1.48504 * 109.47231 * 210.00141 * 9 7 5 12 12 H 1.48501 * 109.46844 * 330.00018 * 9 7 5 13 13 C 1.53004 * 109.46989 * 119.99702 * 2 1 3 14 14 H 1.08996 * 110.88640 * 60.94279 * 13 2 1 15 15 C 1.55157 * 111.00383 * 184.82912 * 13 2 1 16 16 C 1.54326 * 102.94133 * 153.57526 * 15 13 2 17 17 N 1.47026 * 107.27083 * 337.80593 * 16 15 13 18 18 C 1.34777 * 125.64594 * 178.89430 * 17 16 15 19 19 O 1.21563 * 119.99735 * 185.72567 * 18 17 16 20 20 C 1.47756 * 120.00018 * 5.72672 * 18 17 16 21 21 C 1.40597 * 120.26765 * 173.05358 * 20 18 17 22 22 N 1.30803 * 121.54033 * 179.97438 * 21 20 18 23 23 C 1.33825 * 121.71678 * 0.02562 * 22 21 20 24 24 C 1.40523 * 120.81557 * 180.02562 * 23 22 21 25 25 C 1.36134 * 119.81066 * 179.91459 * 24 23 22 26 26 C 1.39340 * 121.09152 * 0.09138 * 25 24 23 27 27 C 1.36144 * 120.83220 * 359.93110 * 26 25 24 28 28 C 1.40544 * 119.61861 * 0.02562 * 27 26 25 29 29 C 1.39010 * 120.27114 * 352.77654 * 20 18 17 30 30 C 1.47419 * 108.70317 * 358.93903 * 17 16 15 31 31 H 1.08997 * 109.47449 * 295.05950 * 1 2 3 32 32 H 1.08995 * 109.47393 * 175.05508 * 1 2 3 33 33 H 1.09004 * 109.46848 * 55.05812 * 1 2 3 34 34 H 0.97004 * 120.00116 * 265.01102 * 4 2 1 35 35 H 0.96996 * 120.00412 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.72009 * 271.93988 * 15 13 2 37 37 H 1.08999 * 110.72169 * 35.21211 * 15 13 2 38 38 H 1.08997 * 109.88193 * 97.22261 * 16 15 13 39 39 H 1.08998 * 109.88301 * 218.23220 * 16 15 13 40 40 H 1.08000 * 119.23452 * 359.97438 * 21 20 18 41 41 H 1.08002 * 120.09814 * 359.97438 * 24 23 22 42 42 H 1.08002 * 119.45144 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.58382 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.19234 * 179.97438 * 27 26 25 45 45 H 1.08005 * 121.01493 * 359.97438 * 29 20 18 46 46 H 1.08993 * 110.37266 * 265.28773 * 30 17 16 47 47 H 1.09001 * 110.36560 * 142.96379 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3756 6 1 1.8927 1.0404 -2.4242 7 6 2.6115 -0.6622 -3.5091 8 7 2.7377 -0.0056 -4.6429 9 14 3.0545 -2.4750 -3.4255 10 1 1.8567 -3.2925 -3.7450 11 1 4.1298 -2.7676 -4.4070 12 1 3.5293 -2.8058 -2.0579 13 6 2.0400 -0.7212 1.2493 14 1 1.7032 -1.7577 1.2643 15 6 3.5862 -0.6372 1.3477 16 6 3.8430 -0.7584 2.8647 17 7 2.6045 -0.3610 3.5502 18 6 2.4139 -0.3508 4.8843 19 8 1.3142 -0.1027 5.3392 20 6 3.5414 -0.6410 5.7940 21 6 3.3880 -0.4901 7.1834 22 7 4.3692 -0.7405 8.0114 23 6 5.5670 -1.1519 7.5790 24 6 6.6078 -1.4161 8.4854 25 6 7.8177 -1.8353 8.0232 26 6 8.0468 -2.0071 6.6595 27 6 7.0638 -1.7610 5.7503 28 6 5.8019 -1.3277 6.1919 29 6 4.7608 -1.0711 5.2836 30 6 1.6056 0.0234 2.5365 31 1 -0.3634 0.4353 0.9309 32 1 -0.3634 -1.0238 -0.0886 33 1 -0.3633 0.5886 -0.8425 34 1 2.2490 -1.6319 -1.1525 35 1 3.0604 -0.4630 -5.4350 36 1 4.0522 -1.4632 0.8105 37 1 3.9451 0.3206 0.9711 38 1 4.0923 -1.7889 3.1173 39 1 4.6593 -0.0976 3.1563 40 1 2.4378 -0.1597 7.5764 41 1 6.4481 -1.2878 9.5458 42 1 8.6134 -2.0371 8.7250 43 1 9.0162 -2.3404 6.3196 44 1 7.2528 -1.8972 4.6958 45 1 4.9049 -1.2002 4.2210 46 1 1.6235 1.1012 2.3756 47 1 0.6105 -0.2987 2.8434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672227858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:00 Heat of formation + Delta-G solvation = 58.108621 kcal Electronic energy + Delta-G solvation = -28558.474869 eV Core-core repulsion = 24707.226877 eV Total energy + Delta-G solvation = -3851.247993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44335 -40.10099 -38.14266 -37.14228 -35.64622 -34.05159 -32.47199 -31.25924 -30.76848 -30.43448 -29.74507 -27.80799 -25.66128 -24.60775 -23.95224 -23.00071 -22.55849 -21.43035 -20.25329 -19.94341 -18.86816 -17.66243 -17.62977 -17.14326 -16.32462 -16.28190 -15.66355 -15.14171 -14.94028 -14.68909 -14.48702 -14.26441 -13.93942 -13.90272 -13.72971 -13.66620 -13.17643 -12.89903 -12.61573 -12.52064 -12.34435 -12.16264 -12.12416 -11.91579 -11.84038 -11.51482 -11.08319 -10.99099 -10.85780 -10.66313 -10.57470 -10.41063 -10.28660 -9.99931 -9.72069 -9.63968 -9.22695 -9.00152 -8.82610 -8.70982 -7.34137 -5.82205 -3.18188 -0.17692 0.26309 1.46162 2.21901 2.69381 2.94265 3.29784 3.34239 3.40357 3.72745 3.83106 4.08714 4.14459 4.35874 4.39112 4.43898 4.52905 4.55276 4.68398 4.72414 4.80806 4.83093 5.00755 5.07414 5.17696 5.28616 5.36366 5.40078 5.48297 5.49872 5.55404 5.65567 5.70757 5.75472 5.83865 5.86990 5.97698 5.99925 6.02060 6.09048 6.12789 6.26383 6.34697 6.39056 6.41886 6.72927 6.94946 7.24847 7.51167 7.89366 7.93619 8.36573 9.14691 9.87014 10.06521 11.36112 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.002555 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.902934 B =10955.595393 C =12443.667143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.082 0.918 15 C -0.121 4.121 16 C 0.083 3.917 17 N -0.609 5.609 18 C 0.577 3.423 19 O -0.534 6.534 20 C -0.184 4.184 21 C 0.185 3.815 22 N -0.479 5.479 23 C 0.140 3.860 24 C -0.100 4.100 25 C -0.092 4.092 26 C -0.121 4.121 27 C -0.086 4.086 28 C -0.113 4.113 29 C -0.051 4.051 30 C 0.114 3.886 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.172 0.828 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.178 0.822 46 H 0.075 0.925 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.665 -4.029 24.595 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.581 5.581 9 Si 0.715 3.285 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.100 0.900 15 C -0.159 4.159 16 C -0.039 4.039 17 N -0.342 5.342 18 C 0.366 3.634 19 O -0.412 6.412 20 C -0.189 4.189 21 C 0.011 3.989 22 N -0.186 5.186 23 C 0.019 3.981 24 C -0.118 4.118 25 C -0.112 4.112 26 C -0.139 4.139 27 C -0.105 4.105 28 C -0.115 4.115 29 C -0.077 4.077 30 C -0.008 4.008 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.189 0.811 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.194 0.806 46 H 0.094 0.906 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.062 -3.629 25.664 27.458 hybrid contribution 0.511 -1.484 -1.052 1.889 sum 9.574 -5.113 24.612 26.899 Atomic orbital electron populations 1.22471 0.98616 1.01389 1.00380 1.20101 0.92066 0.95433 0.84309 0.92320 1.42730 1.79776 1.09400 1.06993 1.19043 1.36970 0.95597 0.85508 0.89203 1.24668 1.01490 0.97394 0.95568 1.69694 1.52631 1.35544 1.00260 0.86566 0.78117 0.86947 0.76902 1.21192 1.21845 1.20390 1.22726 0.95009 1.00493 0.94476 0.89999 1.22694 0.96657 1.04536 0.92010 1.22660 0.87299 0.99485 0.94451 1.48402 1.15450 1.65532 1.04792 1.17630 0.87622 0.77594 0.80566 1.90795 1.25042 1.49813 1.75561 1.20936 0.95111 1.06831 0.96002 1.23087 0.97579 0.90385 0.87875 1.68085 0.99689 1.12698 1.38135 1.19101 0.92261 0.95839 0.90923 1.20847 0.91645 0.99536 0.99804 1.21007 0.96961 0.97272 0.95932 1.20972 0.99668 1.00130 0.93139 1.21101 0.91562 0.97429 1.00431 1.18868 0.95585 1.03069 0.93981 1.23568 0.90880 0.90572 1.02646 1.22378 0.92416 0.99741 0.86225 0.93966 0.93385 0.92326 0.80709 0.93048 0.89528 0.89472 0.90660 0.90497 0.81073 0.84517 0.85068 0.85166 0.84763 0.80579 0.90640 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.38 37.16 0.35 -2.38 16 2 C 0.19 3.23 2.40 -67.93 -0.16 3.06 16 3 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 4 N -0.75 -15.94 4.71 -53.42 -0.25 -16.20 16 5 C -0.24 -6.37 10.41 -15.06 -0.16 -6.52 16 6 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -28.37 13.97 55.49 0.78 -27.59 16 9 Si 0.88 21.04 27.74 -169.99 -4.71 16.32 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.04 6.52 56.52 0.37 -5.67 16 13 C -0.11 -1.43 2.64 -88.47 -0.23 -1.67 16 14 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.12 -1.44 6.21 -24.90 -0.15 -1.59 16 16 C 0.08 0.80 4.87 -3.06 -0.01 0.78 16 17 N -0.61 -7.31 3.33 -173.55 -0.58 -7.89 16 18 C 0.58 7.68 7.81 -12.37 -0.10 7.58 16 19 O -0.53 -8.66 16.59 5.31 0.09 -8.57 16 20 C -0.18 -2.11 5.88 -104.83 -0.62 -2.73 16 21 C 0.18 2.15 10.73 -17.10 -0.18 1.97 16 22 N -0.48 -5.73 10.30 -10.67 -0.11 -5.84 16 23 C 0.14 1.51 6.61 -84.79 -0.56 0.95 16 24 C -0.10 -0.84 9.97 -39.48 -0.39 -1.24 16 25 C -0.09 -0.59 9.94 -39.93 -0.40 -0.98 16 26 C -0.12 -0.75 9.96 -39.92 -0.40 -1.15 16 27 C -0.09 -0.63 9.77 -39.47 -0.39 -1.02 16 28 C -0.11 -1.09 5.74 -106.82 -0.61 -1.71 16 29 C -0.05 -0.49 8.45 -38.43 -0.32 -0.82 16 30 C 0.11 1.45 5.41 -2.53 -0.01 1.43 16 31 H 0.04 0.57 7.09 -51.93 -0.37 0.21 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.36 7.59 5.66 -40.82 -0.23 7.36 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.10 8.03 -51.93 -0.42 0.68 16 38 H 0.08 0.61 6.73 -51.93 -0.35 0.26 16 39 H 0.08 0.62 6.75 -51.93 -0.35 0.27 16 40 H 0.17 1.84 7.65 -52.49 -0.40 1.44 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 43 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.18 1.33 2.86 -54.93 -0.16 1.18 16 46 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 47 H 0.08 1.09 7.78 -51.93 -0.40 0.69 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -33.06 378.87 -10.02 -43.09 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.49 Total: 6.96 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -4.45 Total: -5.99 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.16 Total: -57.51 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.06 -10.02 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672227858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.195 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds