Wall clock time and date at job start Sat Apr 11 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47229 * 2 1 4 4 N 1.46493 * 109.47462 * 239.99701 * 2 1 3 5 5 C 1.36931 * 120.00128 * 84.99751 * 4 2 1 6 6 H 1.08002 * 120.00173 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00144 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00342 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99994 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47092 * 90.00065 * 9 7 5 11 11 H 1.48504 * 109.47231 * 210.00141 * 9 7 5 12 12 H 1.48501 * 109.46844 * 330.00018 * 9 7 5 13 13 C 1.53004 * 109.46989 * 119.99702 * 2 1 3 14 14 H 1.08996 * 110.88640 * 60.94279 * 13 2 1 15 15 C 1.55157 * 111.00383 * 184.82912 * 13 2 1 16 16 C 1.54326 * 102.94133 * 153.57526 * 15 13 2 17 17 N 1.47026 * 107.27083 * 337.80593 * 16 15 13 18 18 C 1.34777 * 125.64594 * 178.89430 * 17 16 15 19 19 O 1.21563 * 119.99735 * 185.72567 * 18 17 16 20 20 C 1.47756 * 120.00018 * 5.72672 * 18 17 16 21 21 C 1.40597 * 120.26765 * 173.05358 * 20 18 17 22 22 N 1.30803 * 121.54033 * 179.97438 * 21 20 18 23 23 C 1.33825 * 121.71678 * 0.02562 * 22 21 20 24 24 C 1.40523 * 120.81557 * 180.02562 * 23 22 21 25 25 C 1.36134 * 119.81066 * 179.91459 * 24 23 22 26 26 C 1.39340 * 121.09152 * 0.09138 * 25 24 23 27 27 C 1.36144 * 120.83220 * 359.93110 * 26 25 24 28 28 C 1.40544 * 119.61861 * 0.02562 * 27 26 25 29 29 C 1.39010 * 120.27114 * 352.77654 * 20 18 17 30 30 C 1.47419 * 108.70317 * 358.93903 * 17 16 15 31 31 H 1.08997 * 109.47449 * 295.05950 * 1 2 3 32 32 H 1.08995 * 109.47393 * 175.05508 * 1 2 3 33 33 H 1.09004 * 109.46848 * 55.05812 * 1 2 3 34 34 H 0.97004 * 120.00116 * 265.01102 * 4 2 1 35 35 H 0.96996 * 120.00412 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.72009 * 271.93988 * 15 13 2 37 37 H 1.08999 * 110.72169 * 35.21211 * 15 13 2 38 38 H 1.08997 * 109.88193 * 97.22261 * 16 15 13 39 39 H 1.08998 * 109.88301 * 218.23220 * 16 15 13 40 40 H 1.08000 * 119.23452 * 359.97438 * 21 20 18 41 41 H 1.08002 * 120.09814 * 359.97438 * 24 23 22 42 42 H 1.08002 * 119.45144 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.58382 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.19234 * 179.97438 * 27 26 25 45 45 H 1.08005 * 121.01493 * 359.97438 * 29 20 18 46 46 H 1.08993 * 110.37266 * 265.28773 * 30 17 16 47 47 H 1.09001 * 110.36560 * 142.96379 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3756 6 1 1.8927 1.0404 -2.4242 7 6 2.6115 -0.6622 -3.5091 8 7 2.7377 -0.0056 -4.6429 9 14 3.0545 -2.4750 -3.4255 10 1 1.8567 -3.2925 -3.7450 11 1 4.1298 -2.7676 -4.4070 12 1 3.5293 -2.8058 -2.0579 13 6 2.0400 -0.7212 1.2493 14 1 1.7032 -1.7577 1.2643 15 6 3.5862 -0.6372 1.3477 16 6 3.8430 -0.7584 2.8647 17 7 2.6045 -0.3610 3.5502 18 6 2.4139 -0.3508 4.8843 19 8 1.3142 -0.1027 5.3392 20 6 3.5414 -0.6410 5.7940 21 6 3.3880 -0.4901 7.1834 22 7 4.3692 -0.7405 8.0114 23 6 5.5670 -1.1519 7.5790 24 6 6.6078 -1.4161 8.4854 25 6 7.8177 -1.8353 8.0232 26 6 8.0468 -2.0071 6.6595 27 6 7.0638 -1.7610 5.7503 28 6 5.8019 -1.3277 6.1919 29 6 4.7608 -1.0711 5.2836 30 6 1.6056 0.0234 2.5365 31 1 -0.3634 0.4353 0.9309 32 1 -0.3634 -1.0238 -0.0886 33 1 -0.3633 0.5886 -0.8425 34 1 2.2490 -1.6319 -1.1525 35 1 3.0604 -0.4630 -5.4350 36 1 4.0522 -1.4632 0.8105 37 1 3.9451 0.3206 0.9711 38 1 4.0923 -1.7889 3.1173 39 1 4.6593 -0.0976 3.1563 40 1 2.4378 -0.1597 7.5764 41 1 6.4481 -1.2878 9.5458 42 1 8.6134 -2.0371 8.7250 43 1 9.0162 -2.3404 6.3196 44 1 7.2528 -1.8972 4.6958 45 1 4.9049 -1.2002 4.2210 46 1 1.6235 1.1012 2.3756 47 1 0.6105 -0.2987 2.8434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672227858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:59 Heat of formation + Delta-G solvation = 37.532122 kcal Electronic energy + Delta-G solvation = -28559.367133 eV Core-core repulsion = 24707.226877 eV Total energy + Delta-G solvation = -3852.140256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.21221 -40.98823 -39.20938 -37.85447 -37.05361 -34.97783 -34.09056 -32.40444 -31.60195 -31.25881 -31.01890 -28.96798 -26.63102 -25.70143 -25.06882 -23.97851 -23.43325 -22.56365 -21.34635 -21.08473 -19.71911 -19.38688 -18.35153 -17.99777 -17.36761 -17.11517 -16.68613 -16.39273 -15.96603 -15.57017 -15.37638 -15.18242 -15.11703 -14.95176 -14.75774 -14.56015 -14.41461 -14.13601 -13.94072 -13.70824 -13.52413 -13.46817 -12.85947 -12.77061 -12.72124 -12.67121 -12.43527 -12.37515 -11.94837 -11.89613 -11.74096 -11.69042 -11.55460 -11.40190 -11.32163 -10.93400 -10.53008 -9.97153 -9.71767 -9.32003 -9.27146 -7.95959 -5.28968 -0.85036 -0.43649 0.81950 1.41388 1.45209 1.46426 1.53494 1.74973 2.15340 2.54220 3.03507 3.07942 3.28086 3.36227 3.42263 3.47546 3.61104 3.69219 3.77711 3.81713 3.94376 4.08561 4.17280 4.23203 4.30396 4.32554 4.41740 4.46743 4.56786 4.58528 4.67581 4.69106 4.70005 4.84686 4.92694 4.95899 5.01890 5.05175 5.12476 5.15433 5.28985 5.34199 5.37122 5.41358 5.46736 5.58480 5.84172 5.84493 6.27479 6.31118 6.75485 6.91730 7.14796 7.90333 8.10333 9.25776 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.002555 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.902934 B =10955.595393 C =12443.667143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.187 3.813 3 H 0.048 0.952 4 N -0.745 5.745 5 C -0.220 4.220 6 H 0.054 0.946 7 C -0.068 4.068 8 N -0.988 5.988 9 Si 0.953 3.047 10 H -0.287 1.287 11 H -0.301 1.301 12 H -0.239 1.239 13 C -0.098 4.098 14 H 0.089 0.911 15 C -0.119 4.119 16 C 0.084 3.916 17 N -0.608 5.608 18 C 0.577 3.423 19 O -0.574 6.574 20 C -0.202 4.202 21 C 0.171 3.829 22 N -0.500 5.500 23 C 0.115 3.885 24 C -0.123 4.123 25 C -0.077 4.077 26 C -0.118 4.118 27 C -0.089 4.089 28 C -0.128 4.128 29 C -0.035 4.035 30 C 0.118 3.882 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.366 0.634 35 H 0.255 0.745 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.167 0.833 41 H 0.140 0.860 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.200 0.800 46 H 0.075 0.925 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.531 -6.378 26.180 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.079 3.921 3 H 0.066 0.934 4 N -0.388 5.388 5 C -0.351 4.351 6 H 0.072 0.928 7 C -0.259 4.259 8 N -0.639 5.639 9 Si 0.781 3.219 10 H -0.214 1.214 11 H -0.229 1.229 12 H -0.163 1.163 13 C -0.118 4.118 14 H 0.107 0.893 15 C -0.157 4.157 16 C -0.037 4.037 17 N -0.340 5.340 18 C 0.368 3.632 19 O -0.455 6.455 20 C -0.207 4.207 21 C -0.003 4.003 22 N -0.208 5.208 23 C -0.006 4.006 24 C -0.142 4.142 25 C -0.097 4.097 26 C -0.136 4.136 27 C -0.108 4.108 28 C -0.130 4.130 29 C -0.060 4.060 30 C -0.005 4.005 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.200 0.800 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.184 0.816 41 H 0.158 0.842 42 H 0.180 0.820 43 H 0.180 0.820 44 H 0.180 0.820 45 H 0.216 0.784 46 H 0.093 0.907 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.937 -5.984 27.311 30.401 hybrid contribution -0.298 -0.673 -1.460 1.635 sum 11.639 -6.658 25.851 29.122 Atomic orbital electron populations 1.22373 0.97922 1.01280 1.00696 1.20251 0.92414 0.95095 0.84372 0.93372 1.42669 1.79865 1.09588 1.06692 1.18965 1.34546 0.94294 0.87265 0.92797 1.25489 1.02694 1.02507 0.95163 1.69892 1.55061 1.37756 1.01227 0.85435 0.77291 0.80637 0.78542 1.21431 1.22857 1.16289 1.22514 0.96429 1.00211 0.92602 0.89276 1.22667 0.95048 1.04282 0.93704 1.22838 0.86774 1.01573 0.92509 1.48400 1.16099 1.65080 1.04384 1.17875 0.87549 0.76907 0.80908 1.90766 1.26655 1.51838 1.76266 1.20736 0.95459 1.09126 0.95419 1.23057 0.97645 0.91181 0.88394 1.68055 1.00462 1.13572 1.38662 1.19537 0.92309 0.96385 0.92329 1.21043 0.92198 1.01026 0.99936 1.21433 0.96612 0.94668 0.96962 1.21426 1.00739 0.98626 0.92767 1.21464 0.90490 0.96598 1.02208 1.19106 0.96798 1.03642 0.93449 1.23786 0.89847 0.88756 1.03603 1.22251 0.92518 0.99623 0.86068 0.91298 0.93131 0.94920 0.80030 0.93598 0.88953 0.90454 0.88068 0.88241 0.81632 0.84208 0.82049 0.81974 0.82007 0.78399 0.90695 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.16 9.38 71.98 0.68 -4.49 16 2 C 0.19 6.14 2.40 44.99 0.11 6.25 16 3 H 0.05 1.70 8.07 -2.38 -0.02 1.68 16 4 N -0.74 -30.91 4.71 -322.94 -1.52 -32.43 16 5 C -0.22 -11.70 10.41 84.04 0.87 -10.83 16 6 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 7 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 8 N -0.99 -61.76 13.97 21.65 0.30 -61.45 16 9 Si 0.95 42.83 27.74 68.60 1.90 44.73 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 12 H -0.24 -9.09 6.52 99.48 0.65 -8.44 16 13 C -0.10 -2.40 2.64 -9.40 -0.02 -2.42 16 14 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 15 C -0.12 -2.45 6.21 31.78 0.20 -2.26 16 16 C 0.08 1.31 4.87 86.73 0.42 1.73 16 17 N -0.61 -13.43 3.33 -821.25 -2.73 -16.17 16 18 C 0.58 15.01 7.81 86.76 0.68 15.69 16 19 O -0.57 -18.96 16.59 -3.91 -0.06 -19.03 16 20 C -0.20 -4.52 5.88 -20.00 -0.12 -4.63 16 21 C 0.17 4.13 10.73 85.42 0.92 5.04 16 22 N -0.50 -12.18 10.30 -187.68 -1.93 -14.11 16 23 C 0.11 2.37 6.61 40.27 0.27 2.64 16 24 C -0.12 -1.89 9.97 22.34 0.22 -1.66 16 25 C -0.08 -0.71 9.94 22.05 0.22 -0.49 16 26 C -0.12 -0.93 9.96 22.05 0.22 -0.71 16 27 C -0.09 -0.93 9.77 22.34 0.22 -0.71 16 28 C -0.13 -2.16 5.74 -21.29 -0.12 -2.28 16 29 C -0.03 -0.58 8.45 23.01 0.19 -0.39 16 30 C 0.12 2.80 5.41 86.86 0.47 3.27 16 31 H 0.07 1.80 7.09 -2.39 -0.02 1.78 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.37 14.39 5.66 -92.71 -0.52 13.87 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.77 8.03 -2.39 -0.02 1.75 16 38 H 0.10 1.13 6.73 -2.39 -0.02 1.12 16 39 H 0.10 1.17 6.75 -2.39 -0.02 1.16 16 40 H 0.17 3.91 7.65 -2.91 -0.02 3.88 16 41 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.16 0.47 8.06 -2.91 -0.02 0.44 16 43 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 44 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 45 H 0.20 2.18 2.86 -5.21 -0.01 2.16 16 46 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 47 H 0.08 1.94 7.78 -2.39 -0.02 1.92 16 Total: -1.00 -75.52 378.87 2.25 -73.27 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.41 Total: 24.77 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.88 Total: 0.42 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -5.88 Total: -124.16 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.06 Total: -19.03 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.90 Total: 44.73 kcal Total: -75.52 2.25 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672227858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.804 kcal (2) G-P(sol) polarization free energy of solvation -75.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds