Wall clock time and date at job start Sat Apr 11 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46496 * 109.47278 * 120.00177 * 2 1 3 5 5 C 1.36944 * 120.00137 * 275.00307 * 4 2 1 6 6 H 1.08001 * 119.99565 * 359.97438 * 5 4 2 7 7 C 1.38805 * 119.99999 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00370 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47149 * 60.00206 * 9 7 5 11 11 H 1.48500 * 109.47109 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47164 * 299.99899 * 9 7 5 13 13 C 1.52997 * 109.47232 * 240.00133 * 2 1 3 14 14 H 1.09001 * 109.47289 * 299.99925 * 13 2 1 15 15 C 1.53005 * 109.47452 * 180.02562 * 13 2 1 16 16 N 1.46506 * 109.47289 * 60.00053 * 13 2 1 17 17 C 1.34774 * 120.00251 * 205.00099 * 16 13 2 18 18 O 1.21556 * 119.99936 * 359.97438 * 17 16 13 19 19 C 1.47856 * 120.00135 * 179.97438 * 17 16 13 20 20 C 1.39626 * 120.50001 * 359.72990 * 19 17 16 21 21 N 1.31695 * 120.82866 * 179.69944 * 20 19 17 22 22 C 1.31820 * 122.01357 * 0.58324 * 21 20 19 23 23 C 1.39398 * 120.91030 * 359.70641 * 22 21 20 24 24 C 1.48412 * 120.46348 * 179.97438 * 23 22 21 25 25 C 1.39329 * 120.12193 * 179.74369 * 24 23 22 26 26 C 1.38013 * 119.88146 * 179.77156 * 25 24 23 27 27 C 1.38323 * 120.11672 * 0.52294 * 26 25 24 28 28 C 1.38315 * 120.24515 * 359.70856 * 27 26 25 29 29 C 1.38020 * 120.12028 * 0.04033 * 28 27 26 30 30 C 1.39509 * 119.06925 * 359.97438 * 23 22 21 31 31 H 1.09000 * 109.47140 * 300.00017 * 1 2 3 32 32 H 1.09002 * 109.46777 * 59.99445 * 1 2 3 33 33 H 1.08998 * 109.47624 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99981 * 94.99290 * 4 2 1 35 35 H 0.97001 * 119.99767 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46812 * 300.00216 * 15 13 2 37 37 H 1.09002 * 109.46935 * 59.99874 * 15 13 2 38 38 H 1.08992 * 109.47061 * 179.97438 * 15 13 2 39 39 H 0.97006 * 119.99584 * 25.00028 * 16 13 2 40 40 H 1.08000 * 119.58116 * 359.97019 * 20 19 17 41 41 H 1.07996 * 119.53600 * 179.67864 * 22 21 20 42 42 H 1.08009 * 120.05691 * 0.02562 * 25 24 23 43 43 H 1.08001 * 119.94384 * 180.27764 * 26 25 24 44 44 H 1.08003 * 119.87635 * 179.72730 * 27 26 25 45 45 H 1.08004 * 119.94180 * 180.02562 * 28 27 26 46 46 H 1.07999 * 120.06507 * 180.02562 * 29 28 27 47 47 H 1.07995 * 120.91049 * 179.97438 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8925 1.0404 2.4242 7 6 2.6113 -0.6621 3.5092 8 7 2.9235 -1.9394 3.4503 9 14 2.7903 0.2699 5.1182 10 1 1.4683 0.8076 5.5285 11 1 3.2981 -0.6489 6.1686 12 1 3.7464 1.3917 4.9368 13 6 2.0400 -0.7212 -1.2492 14 1 1.6767 -1.7489 -1.2493 15 6 3.5700 -0.7218 -1.2490 16 7 1.5517 -0.0306 -2.4455 17 6 1.4230 -0.7029 -3.6064 18 8 1.7125 -1.8822 -3.6612 19 6 0.9296 -0.0060 -4.8135 20 6 0.5887 1.3470 -4.7611 21 7 0.1542 1.9756 -5.8337 22 6 0.0107 1.3634 -6.9923 23 6 0.3224 0.0119 -7.1316 24 6 0.1565 -0.6676 -8.4405 25 6 0.4753 -2.0174 -8.5730 26 6 0.3146 -2.6455 -9.7914 27 6 -0.1517 -1.9346 -10.8826 28 6 -0.4652 -0.5932 -10.7579 29 6 -0.3132 0.0436 -9.5429 30 6 0.7925 -0.6930 -6.0232 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2489 -1.6318 1.1525 35 1 3.2461 -2.3968 4.2425 36 1 3.9337 0.3058 -1.2487 37 1 3.9330 -1.2359 -0.3590 38 1 3.9333 -1.2360 -2.1387 39 1 1.3210 0.9107 -2.4018 40 1 0.6868 1.8859 -3.8303 41 1 -0.3539 1.9166 -7.8452 42 1 0.8436 -2.5723 -7.7227 43 1 0.5571 -3.6929 -9.8941 44 1 -0.2718 -2.4289 -11.8353 45 1 -0.8293 -0.0430 -11.6130 46 1 -0.5586 1.0909 -9.4464 47 1 1.0426 -1.7410 -6.0975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674672355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:20 Heat of formation + Delta-G solvation = 14.441472 kcal Electronic energy + Delta-G solvation = -27744.102508 eV Core-core repulsion = 23890.960966 eV Total energy + Delta-G solvation = -3853.141542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.88720 -40.63049 -39.57579 -38.26515 -35.70101 -34.52827 -33.90875 -33.12684 -31.87098 -31.00357 -30.15041 -29.98579 -26.16372 -25.90058 -25.23173 -24.27584 -23.07896 -22.59184 -21.60374 -21.33635 -19.49879 -19.12757 -18.21489 -17.62078 -17.46508 -16.87749 -16.53259 -16.25429 -16.15676 -15.52439 -15.39823 -15.31858 -15.06115 -14.93233 -14.68462 -14.66167 -14.45358 -14.08933 -13.93853 -13.73632 -13.47756 -13.34539 -13.20750 -12.92151 -12.70264 -12.59056 -12.30393 -12.26355 -12.19906 -11.91307 -11.74163 -11.50465 -11.34208 -11.33993 -10.96297 -10.71749 -10.55795 -10.16863 -9.88363 -9.20030 -9.00428 -7.90621 -5.19614 -0.64886 -0.26330 0.47540 0.76816 1.50028 1.52400 1.58205 1.76172 1.94772 2.60086 2.64878 3.03390 3.14870 3.41698 3.43419 3.64107 3.67846 3.71285 3.77848 3.89718 4.03256 4.07086 4.18255 4.20759 4.30802 4.34216 4.40440 4.57360 4.58342 4.59648 4.75932 4.86231 4.88135 4.91331 4.95146 5.01148 5.05886 5.13197 5.15327 5.31251 5.37500 5.46856 5.52155 5.55255 5.57841 5.59145 5.60230 6.04517 6.29847 6.43715 6.72024 7.09664 7.36568 8.09811 8.32991 9.32513 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.001894 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.231841 B =14780.491772 C =15377.371558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 H 0.065 0.935 4 N -0.730 5.730 5 C -0.233 4.233 6 H 0.081 0.919 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.971 3.029 10 H -0.279 1.279 11 H -0.301 1.301 12 H -0.277 1.277 13 C 0.151 3.849 14 H 0.062 0.938 15 C -0.144 4.144 16 N -0.695 5.695 17 C 0.563 3.437 18 O -0.575 6.575 19 C -0.187 4.187 20 C 0.137 3.863 21 N -0.491 5.491 22 C 0.132 3.868 23 C -0.100 4.100 24 C -0.062 4.062 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.121 4.121 29 C -0.111 4.111 30 C -0.023 4.023 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.372 0.628 35 H 0.249 0.751 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.414 0.586 40 H 0.184 0.816 41 H 0.193 0.807 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.149 0.851 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 7.160 -31.629 33.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.058 3.942 3 H 0.083 0.917 4 N -0.370 5.370 5 C -0.365 4.365 6 H 0.099 0.901 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.205 1.205 11 H -0.228 1.228 12 H -0.203 1.203 13 C 0.045 3.955 14 H 0.081 0.919 15 C -0.203 4.203 16 N -0.347 5.347 17 C 0.351 3.649 18 O -0.456 6.456 19 C -0.192 4.192 20 C -0.021 4.021 21 N -0.199 5.199 22 C -0.025 4.025 23 C -0.102 4.102 24 C -0.063 4.063 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.138 4.138 29 C -0.129 4.129 30 C -0.049 4.049 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.204 0.796 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.252 0.748 40 H 0.201 0.799 41 H 0.210 0.790 42 H 0.139 0.861 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.169 0.831 46 H 0.167 0.833 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.742 7.382 -31.432 33.203 hybrid contribution 0.539 -1.107 1.446 1.899 sum -7.203 6.276 -29.987 31.472 Atomic orbital electron populations 1.22319 0.97514 1.00587 1.01165 1.20572 0.92950 0.95755 0.84883 0.91714 1.42453 1.78461 1.10228 1.05861 1.19558 1.34763 0.94295 0.87863 0.90085 1.25529 1.03121 0.96813 1.01407 1.69822 1.52655 1.10228 1.29352 0.85247 0.77891 0.77271 0.79538 1.20533 1.22756 1.20310 1.20971 0.94248 0.96473 0.83803 0.91934 1.21940 0.94912 1.02335 1.01064 1.45734 1.65988 1.14533 1.08472 1.18308 0.77168 0.86044 0.83414 1.90772 1.52100 1.17277 1.85437 1.20819 1.07246 0.96677 0.94493 1.23368 0.90768 0.89794 0.98163 1.67790 1.13626 1.38888 0.99566 1.23594 0.92182 0.90790 0.95895 1.19844 1.01501 0.95356 0.93536 1.18662 1.01858 0.93897 0.91863 1.21442 1.00024 0.94229 0.98736 1.21375 0.99448 1.01046 0.92605 1.21628 0.97715 0.94905 0.99410 1.21473 0.99324 0.95090 0.97956 1.21508 0.98468 1.00969 0.91949 1.21883 0.91674 1.00783 0.90557 0.93674 0.90824 0.94924 0.79629 0.94230 0.91521 0.92753 0.93341 0.74792 0.79881 0.79018 0.86117 0.84410 0.83673 0.83077 0.83323 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.33 71.98 0.67 -4.50 16 2 C 0.17 6.07 2.52 44.99 0.11 6.19 16 3 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 4 N -0.73 -35.14 4.43 -322.96 -1.43 -36.57 16 5 C -0.23 -12.37 9.93 84.03 0.83 -11.53 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 8 N -0.97 -58.94 13.06 21.65 0.28 -58.65 16 9 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.15 5.00 2.20 44.99 0.10 5.10 16 14 H 0.06 2.43 7.58 -2.39 -0.02 2.41 16 15 C -0.14 -4.93 9.33 71.98 0.67 -4.26 16 16 N -0.70 -17.73 4.34 -445.38 -1.93 -19.67 16 17 C 0.56 15.92 7.75 86.79 0.67 16.60 16 18 O -0.58 -21.03 16.08 -3.89 -0.06 -21.09 16 19 C -0.19 -4.22 5.89 -20.02 -0.12 -4.34 16 20 C 0.14 2.50 10.71 85.05 0.91 3.41 16 21 N -0.49 -9.03 10.33 -193.91 -2.00 -11.03 16 22 C 0.13 2.04 10.59 84.97 0.90 2.94 16 23 C -0.10 -1.78 5.89 -19.98 -0.12 -1.90 16 24 C -0.06 -0.98 5.88 -20.04 -0.12 -1.10 16 25 C -0.13 -2.07 9.44 22.48 0.21 -1.86 16 26 C -0.13 -1.66 10.03 22.24 0.22 -1.44 16 27 C -0.12 -1.22 10.04 22.31 0.22 -0.99 16 28 C -0.12 -1.13 10.03 22.24 0.22 -0.90 16 29 C -0.11 -1.25 9.44 22.48 0.21 -1.04 16 30 C -0.02 -0.50 9.07 22.95 0.21 -0.29 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.86 7.45 -2.39 -0.02 1.84 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.37 19.83 7.58 -92.71 -0.70 19.13 16 35 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 2.17 7.44 -2.39 -0.02 2.15 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 7.68 6.45 -92.70 -0.60 7.09 16 40 H 0.18 2.33 6.41 -2.91 -0.02 2.31 16 41 H 0.19 1.61 6.21 -2.91 -0.02 1.60 16 42 H 0.12 2.03 6.27 -2.91 -0.02 2.01 16 43 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.15 0.59 8.06 -2.91 -0.02 0.57 16 46 H 0.15 0.87 6.23 -2.91 -0.02 0.86 16 47 H 0.14 3.23 5.99 -2.91 -0.02 3.21 16 Total: -1.00 -71.59 391.23 2.89 -68.70 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.28 Total: 34.60 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 6.29 Total: -3.75 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -5.08 Total: -125.92 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.06 Total: -21.09 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.59 2.89 -68.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674672355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.146 kcal (2) G-P(sol) polarization free energy of solvation -71.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds