Wall clock time and date at job start Sat Apr 11 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47245 * 2 1 4 4 N 1.46500 * 109.47570 * 120.00310 * 2 1 3 5 5 C 1.36933 * 119.99975 * 281.91678 * 4 2 1 6 6 H 1.08003 * 120.00028 * 2.25560 * 5 4 2 7 7 C 1.38813 * 119.99973 * 182.26974 * 5 4 2 8 8 N 1.31617 * 119.99882 * 183.90115 * 7 5 4 9 9 Si 1.86794 * 119.99788 * 3.88966 * 7 5 4 10 10 H 1.48499 * 109.47015 * 94.33855 * 9 7 5 11 11 H 1.48504 * 109.47072 * 214.33340 * 9 7 5 12 12 H 1.48498 * 109.47597 * 334.33545 * 9 7 5 13 13 C 1.53008 * 109.46883 * 240.00412 * 2 1 3 14 14 H 1.08992 * 109.69801 * 286.22200 * 13 2 1 15 15 C 1.53622 * 109.66102 * 46.81074 * 13 2 1 16 16 C 1.53044 * 109.23644 * 174.54939 * 15 13 2 17 17 C 1.53042 * 109.54279 * 298.50939 * 16 15 13 18 18 C 1.53191 * 109.30609 * 61.36476 * 17 16 15 19 19 N 1.46919 * 109.58376 * 165.86505 * 13 2 1 20 20 C 1.34771 * 120.63776 * 6.62505 * 19 13 2 21 21 O 1.21283 * 119.99874 * 5.08413 * 20 19 13 22 22 C 1.50704 * 120.00376 * 185.08529 * 20 19 13 23 23 N 1.46506 * 109.46961 * 185.50396 * 22 20 19 24 24 C 1.36368 * 125.96139 * 266.73252 * 23 22 20 25 25 O 1.35636 * 125.98820 * 0.03699 * 24 23 22 26 26 N 1.30902 * 108.02522 * 179.89075 * 24 23 22 27 27 N 1.40114 * 107.93515 * 0.36573 * 26 24 23 28 28 C 1.30907 * 107.94302 * 359.77048 * 27 26 24 29 29 O 1.35622 * 125.98671 * 180.02562 * 28 27 26 30 30 H 1.09009 * 109.46812 * 304.64222 * 1 2 3 31 31 H 1.08993 * 109.47279 * 64.63970 * 1 2 3 32 32 H 1.08998 * 109.47303 * 184.64629 * 1 2 3 33 33 H 0.96998 * 119.99889 * 101.90373 * 4 2 1 34 34 H 0.97004 * 119.99566 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.63967 * 54.56269 * 15 13 2 36 36 H 1.08998 * 109.45933 * 294.43142 * 15 13 2 37 37 H 1.09006 * 109.46114 * 178.49009 * 16 15 13 38 38 H 1.09003 * 109.46018 * 58.53846 * 16 15 13 39 39 H 1.09000 * 109.49307 * 301.42204 * 17 16 15 40 40 H 1.08995 * 109.49934 * 181.31529 * 17 16 15 41 41 H 1.09002 * 109.58698 * 185.57941 * 18 17 16 42 42 H 1.09003 * 109.70385 * 65.22724 * 18 17 16 43 43 H 1.08995 * 109.47072 * 65.50229 * 22 20 19 44 44 H 1.08996 * 109.46710 * 305.49905 * 22 20 19 45 45 H 0.96700 * 113.99886 * 89.99906 * 25 24 23 46 46 H 0.96702 * 114.00152 * 269.96981 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.0158 -0.0494 2.4060 6 1 1.6200 0.9523 2.4854 7 6 2.5222 -0.6868 3.5304 8 7 2.4500 -0.1016 4.7071 9 14 3.3058 -2.3751 3.3734 10 1 4.7748 -2.2262 3.2150 11 1 3.0177 -3.1700 4.5943 12 1 2.7480 -3.0714 2.1864 13 6 2.0400 -0.7212 -1.2494 14 1 1.8921 -1.7955 -1.1395 15 6 1.2787 -0.2163 -2.4845 16 6 1.8870 -0.8415 -3.7421 17 6 3.3506 -0.4129 -3.8703 18 6 4.1338 -0.9151 -2.6533 19 7 3.4696 -0.4369 -1.4330 20 6 4.1600 0.2446 -0.4975 21 8 3.6263 0.5494 0.5480 22 6 5.5953 0.6282 -0.7506 23 7 6.1576 1.2390 0.4565 24 6 6.1931 2.5731 0.7369 25 8 5.7135 3.5664 -0.0524 26 7 6.7683 2.7268 1.9027 27 7 7.1196 1.4577 2.3812 28 6 6.7422 0.5731 1.4931 29 8 6.9036 -0.7701 1.5878 30 1 -0.3633 0.5842 0.8456 31 1 -0.3633 0.4401 -0.9286 32 1 -0.3634 -1.0243 0.0832 33 1 2.3435 -1.6022 1.1310 34 1 2.8035 -0.5472 5.4929 35 1 1.3561 0.8693 -2.5441 36 1 0.2299 -0.5026 -2.4068 37 1 1.3325 -0.5066 -4.6188 38 1 1.8316 -1.9278 -3.6708 39 1 3.4084 0.6746 -3.9166 40 1 3.7764 -0.8395 -4.7784 41 1 5.1526 -0.5293 -2.6898 42 1 4.1556 -2.0049 -2.6544 43 1 5.6412 1.3411 -1.5737 44 1 6.1691 -0.2620 -1.0084 45 1 4.7885 3.7916 0.1171 46 1 7.7353 -1.0936 1.2152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689912570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:36 Heat of formation + Delta-G solvation = 48.963952 kcal Electronic energy + Delta-G solvation = -32753.569683 eV Core-core repulsion = 28491.075885 eV Total energy + Delta-G solvation = -4262.493798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07366 -40.38603 -38.00626 -37.31642 -36.91029 -35.68684 -33.90846 -32.88837 -32.27195 -30.30688 -29.32516 -28.38699 -28.03664 -24.93220 -24.40539 -22.59590 -22.54075 -21.93927 -21.03188 -20.16056 -19.47258 -18.69574 -18.36621 -17.46820 -16.88510 -16.60738 -16.10051 -15.64594 -15.28059 -15.04636 -14.69559 -14.54201 -14.21815 -13.95663 -13.69770 -13.44723 -13.20565 -12.93947 -12.79001 -12.69166 -12.39747 -12.32331 -12.23124 -12.17230 -11.60250 -11.51856 -11.23189 -11.11692 -11.02516 -10.78824 -10.67386 -10.56812 -10.32169 -10.20896 -10.05935 -9.81424 -9.34187 -9.15897 -8.76424 -8.57233 -8.28478 -6.84932 -5.48115 -2.77083 1.61781 2.00795 2.49343 2.87024 3.03579 3.44500 3.48360 3.58095 3.65019 3.91285 4.37008 4.45063 4.53157 4.66899 4.76388 4.78963 4.84465 4.91381 5.14487 5.18406 5.36191 5.40502 5.43976 5.51932 5.56279 5.64461 5.75366 5.78965 5.86959 5.87411 5.90193 5.92110 6.13852 6.23447 6.26949 6.30456 6.48086 6.64853 6.89484 7.13898 7.17567 7.45470 7.57432 8.14541 8.23477 8.53236 8.69292 9.47671 10.21107 10.40523 11.71977 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008651 B = 0.007054 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.831105 B = 3968.701185 C = 5780.143194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.188 3.812 3 H 0.064 0.936 4 N -0.722 5.722 5 C -0.194 4.194 6 H 0.081 0.919 7 C -0.002 4.002 8 N -0.942 5.942 9 Si 0.880 3.120 10 H -0.281 1.281 11 H -0.299 1.299 12 H -0.288 1.288 13 C 0.144 3.856 14 H 0.065 0.935 15 C -0.128 4.128 16 C -0.120 4.120 17 C -0.134 4.134 18 C 0.108 3.892 19 N -0.613 5.613 20 C 0.453 3.547 21 O -0.411 6.411 22 C 0.084 3.916 23 N -0.494 5.494 24 C 0.413 3.587 25 O -0.443 6.443 26 N -0.292 5.292 27 N -0.293 5.293 28 C 0.423 3.577 29 O -0.427 6.427 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.354 0.646 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.414 0.586 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.317 -1.176 -23.696 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.078 3.922 3 H 0.082 0.918 4 N -0.364 5.364 5 C -0.324 4.324 6 H 0.099 0.901 7 C -0.195 4.195 8 N -0.592 5.592 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.216 1.216 13 C 0.041 3.959 14 H 0.083 0.917 15 C -0.166 4.166 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.015 4.015 19 N -0.351 5.351 20 C 0.235 3.765 21 O -0.276 6.276 22 C -0.044 4.044 23 N -0.214 5.214 24 C 0.103 3.897 25 O -0.243 6.243 26 N -0.136 5.136 27 N -0.136 5.136 28 C 0.113 3.887 29 O -0.225 6.225 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.187 0.813 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.273 0.727 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.630 -0.144 -21.529 22.253 hybrid contribution -0.096 -2.216 -1.504 2.680 sum 5.534 -2.359 -23.033 23.806 Atomic orbital electron populations 1.22583 0.99166 1.01136 1.00143 1.20333 0.90847 0.96725 0.84261 0.91789 1.42703 1.76262 1.12914 1.04530 1.18740 1.31337 0.99005 0.83302 0.90109 1.24521 1.01915 0.97573 0.95524 1.69679 1.53017 1.38420 0.98085 0.86613 0.80621 0.86011 0.75565 1.20735 1.22610 1.21553 1.21720 0.78667 0.99565 0.95966 0.91656 1.22110 0.99847 1.00995 0.93685 1.21531 0.95401 1.00734 0.98081 1.21910 0.96243 1.01618 0.97422 1.21668 0.95952 0.99371 0.84545 1.47908 1.10024 1.57289 1.19903 1.20662 0.88012 0.82582 0.85291 1.91409 1.66588 1.48063 1.21579 1.21768 0.95272 1.00758 0.86618 1.46513 1.49305 1.06959 1.18594 1.21158 0.99514 0.78533 0.90450 1.84815 1.34236 1.47736 1.57548 1.78299 1.18791 1.12629 1.03882 1.78334 1.22553 0.93623 1.19129 1.21161 0.96665 0.85572 0.85290 1.85169 1.44176 1.11884 1.81254 0.92362 0.94052 0.93620 0.81275 0.93632 0.91449 0.90289 0.91845 0.91914 0.91456 0.91055 0.90588 0.91553 0.86238 0.87235 0.72722 0.74204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 8.82 37.16 0.33 -2.58 16 2 C 0.19 3.49 1.84 -67.93 -0.13 3.37 16 3 H 0.06 1.32 6.27 -51.93 -0.33 0.99 16 4 N -0.72 -17.21 3.19 -53.42 -0.17 -17.38 16 5 C -0.19 -5.66 8.68 -15.06 -0.13 -5.80 16 6 H 0.08 2.61 8.06 -52.48 -0.42 2.18 16 7 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 8 N -0.94 -31.91 13.97 55.49 0.78 -31.13 16 9 Si 0.88 24.18 27.96 -169.99 -4.75 19.43 16 10 H -0.28 -7.89 7.11 56.52 0.40 -7.49 16 11 H -0.30 -8.38 7.11 56.52 0.40 -7.97 16 12 H -0.29 -7.38 6.20 56.52 0.35 -7.03 16 13 C 0.14 2.01 2.67 -67.37 -0.18 1.83 16 14 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 15 C -0.13 -1.32 4.39 -26.39 -0.12 -1.44 16 16 C -0.12 -0.93 5.88 -26.69 -0.16 -1.09 16 17 C -0.13 -0.89 6.08 -26.61 -0.16 -1.05 16 18 C 0.11 0.86 6.32 -3.71 -0.02 0.84 16 19 N -0.61 -7.64 2.97 -164.96 -0.49 -8.13 16 20 C 0.45 6.89 7.49 -10.99 -0.08 6.81 16 21 O -0.41 -8.66 9.28 5.56 0.05 -8.61 16 22 C 0.08 0.96 4.93 -5.19 -0.03 0.93 16 23 N -0.49 -7.66 2.25 -121.35 -0.27 -7.94 16 24 C 0.41 6.86 9.15 -88.82 -0.81 6.05 16 25 O -0.44 -5.61 13.53 -18.61 -0.25 -5.86 16 26 N -0.29 -5.89 12.72 29.65 0.38 -5.51 16 27 N -0.29 -6.16 12.72 29.65 0.38 -5.78 16 28 C 0.42 7.66 9.15 -88.82 -0.81 6.84 16 29 O -0.43 -6.78 13.58 -18.56 -0.25 -7.03 16 30 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 31 H 0.04 0.56 6.15 -51.93 -0.32 0.24 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.35 8.68 5.41 -40.82 -0.22 8.46 16 34 H 0.25 8.33 8.31 -40.82 -0.34 7.99 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.80 6.62 -51.93 -0.34 0.45 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.43 5.91 -51.93 -0.31 0.13 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.12 0.99 8.03 -51.93 -0.42 0.58 16 44 H 0.11 0.92 7.42 -51.93 -0.39 0.54 16 45 H 0.41 3.93 9.06 45.56 0.41 4.34 16 46 H 0.40 3.30 9.06 45.56 0.41 3.71 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -42.29 367.02 -6.38 -48.67 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -4.90 Total: 9.17 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: -2.40 Total: 14.57 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: 0.60 Total: -75.87 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.45 Total: -21.51 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -4.75 Total: 19.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -42.29 -6.38 -48.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689912570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.633 kcal (2) G-P(sol) polarization free energy of solvation -42.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds