Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46788 * 2 1 4 4 N 1.46500 * 109.46868 * 119.99630 * 2 1 3 5 5 C 1.36933 * 120.00099 * 275.00301 * 4 2 1 6 6 H 1.08004 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00279 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99607 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46957 * 90.00808 * 9 7 5 11 11 H 1.48506 * 109.46966 * 210.00454 * 9 7 5 12 12 H 1.48493 * 109.47403 * 330.00601 * 9 7 5 13 13 C 1.52994 * 109.47260 * 240.00244 * 2 1 3 14 14 H 1.09005 * 110.91118 * 302.44429 * 13 2 1 15 15 C 1.55276 * 111.10511 * 66.35601 * 13 2 1 16 16 C 1.54327 * 103.00835 * 153.44804 * 15 13 2 17 17 N 1.47031 * 107.27035 * 337.88798 * 16 15 13 18 18 C 1.34772 * 125.64660 * 178.91571 * 17 16 15 19 19 O 1.21604 * 119.99896 * 175.18946 * 18 17 16 20 20 C 1.47430 * 120.00021 * 355.19079 * 18 17 16 21 21 C 1.38745 * 120.33475 * 46.95027 * 20 18 17 22 22 C 1.38864 * 120.73329 * 179.78345 * 21 20 18 23 23 C 1.36352 * 121.05253 * 0.49750 * 22 21 20 24 24 C 1.40445 * 120.08348 * 359.74254 * 23 22 21 25 25 C 1.40798 * 121.25389 * 179.97438 * 24 23 22 26 26 C 1.36637 * 118.15347 * 180.02562 * 25 24 23 27 27 C 1.39238 * 119.90297 * 0.02562 * 26 25 24 28 28 N 1.31222 * 121.69864 * 0.02562 * 27 26 25 29 29 C 1.33354 * 121.35388 * 359.95580 * 28 27 26 30 30 C 1.47420 * 108.70278 * 358.94142 * 17 16 15 31 31 H 1.09000 * 109.47320 * 299.99913 * 1 2 3 32 32 H 1.08997 * 109.46791 * 60.00077 * 1 2 3 33 33 H 1.08996 * 109.47170 * 180.02562 * 1 2 3 34 34 H 0.96997 * 119.99864 * 95.00367 * 4 2 1 35 35 H 0.96998 * 120.00251 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.61853 * 35.09865 * 15 13 2 37 37 H 1.08988 * 110.90952 * 271.93696 * 15 13 2 38 38 H 1.08994 * 109.88302 * 218.47493 * 16 15 13 39 39 H 1.08994 * 109.88240 * 97.30157 * 16 15 13 40 40 H 1.08008 * 119.63304 * 359.97438 * 21 20 18 41 41 H 1.08003 * 119.47779 * 180.28123 * 22 21 20 42 42 H 1.07999 * 119.95740 * 179.76704 * 23 22 21 43 43 H 1.08002 * 120.92613 * 0.04565 * 25 24 23 44 44 H 1.08000 * 120.04606 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.14639 * 180.02562 * 27 26 25 46 46 H 1.09004 * 110.36716 * 142.96478 * 30 17 16 47 47 H 1.09002 * 110.36756 * 265.17877 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8925 1.0406 2.4242 7 6 2.6122 -0.6616 3.5091 8 7 2.7373 -0.0051 4.6430 9 14 3.0565 -2.4741 3.4252 10 1 4.4891 -2.6162 3.0610 11 1 2.8173 -3.1041 4.7485 12 1 2.2163 -3.1427 2.3995 13 6 2.0401 -0.7212 -1.2492 14 1 1.6547 -1.7398 -1.2950 15 6 1.6787 0.0677 -2.5369 16 6 2.7798 -0.3631 -3.5287 17 7 3.9190 -0.8450 -2.7338 18 6 5.0741 -1.3301 -3.2306 19 8 5.9850 -1.6199 -2.4789 20 6 5.2333 -1.5094 -4.6853 21 6 4.8646 -0.4980 -5.5605 22 6 5.0151 -0.6562 -6.9318 23 6 5.5185 -1.8101 -7.4556 24 6 5.8998 -2.8614 -6.6059 25 6 6.4218 -4.0636 -7.1201 26 6 6.7719 -5.0448 -6.2360 27 6 6.6071 -4.8384 -4.8689 28 7 6.1191 -3.7163 -4.3949 29 6 5.7587 -2.7197 -5.2043 30 6 3.5882 -0.7102 -1.3036 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6317 1.1527 35 1 3.0606 -0.4623 5.4350 36 1 1.7228 1.1414 -2.3544 37 1 0.6940 -0.2193 -2.9055 38 1 3.0856 0.4887 -4.1360 39 1 2.4095 -1.1637 -4.1689 40 1 4.4588 0.4240 -5.1706 41 1 4.7256 0.1461 -7.5944 42 1 5.6245 -1.9157 -8.5252 43 1 6.5426 -4.2063 -8.1839 44 1 7.1757 -5.9791 -6.5971 45 1 6.8882 -5.6221 -4.1809 46 1 3.9935 -1.5503 -0.7396 47 1 3.9748 0.2306 -0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699941712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = 44.183878 kcal Electronic energy + Delta-G solvation = -28951.835832 eV Core-core repulsion = 25099.984017 eV Total energy + Delta-G solvation = -3851.851815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28742 -39.80458 -37.79311 -37.18126 -35.29532 -33.78376 -32.45423 -31.07174 -30.87101 -30.30536 -28.90818 -28.27173 -25.13912 -24.19123 -23.88416 -23.58519 -22.33414 -21.33077 -19.82742 -19.52452 -18.74230 -17.72721 -17.34001 -17.21138 -16.44890 -15.95471 -15.45345 -15.02283 -14.82724 -14.59619 -14.43528 -14.04819 -13.94919 -13.75759 -13.59282 -13.29529 -13.03358 -12.75047 -12.56534 -12.51420 -12.21689 -12.16852 -12.04412 -11.73437 -11.71821 -11.55537 -10.96001 -10.87396 -10.80712 -10.57252 -10.52745 -10.22449 -10.00864 -9.90637 -9.53372 -9.50070 -9.15917 -8.88996 -8.64058 -8.46053 -7.23235 -5.72265 -3.07738 -0.11959 0.46528 1.48561 2.46954 2.83978 3.10101 3.44446 3.48275 3.53073 3.80802 3.95167 4.15065 4.36762 4.37591 4.52704 4.55045 4.63235 4.65387 4.70237 4.78852 4.90428 4.97505 5.07510 5.25148 5.31584 5.39630 5.49905 5.50732 5.59194 5.60600 5.65124 5.72539 5.82571 5.84314 5.86175 5.94589 6.01880 6.09732 6.11355 6.24294 6.31041 6.36829 6.41871 6.43677 6.54471 6.79782 7.01212 7.58510 7.70860 8.03083 8.28165 8.46744 9.25075 9.98062 10.17177 11.46088 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.002922 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.467183 B = 9579.070082 C =10829.277334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.880 3.120 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.106 4.106 14 H 0.079 0.921 15 C -0.123 4.123 16 C 0.098 3.902 17 N -0.617 5.617 18 C 0.576 3.424 19 O -0.508 6.508 20 C -0.092 4.092 21 C -0.072 4.072 22 C -0.121 4.121 23 C -0.079 4.079 24 C -0.108 4.108 25 C -0.058 4.058 26 C -0.175 4.175 27 C 0.135 3.865 28 N -0.454 5.454 29 C 0.160 3.840 30 C 0.120 3.880 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.161 0.839 46 H 0.078 0.922 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.622 -4.901 -31.652 32.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.081 3.919 3 H 0.076 0.924 4 N -0.392 5.392 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.126 4.126 14 H 0.098 0.902 15 C -0.161 4.161 16 C -0.025 4.025 17 N -0.351 5.351 18 C 0.363 3.637 19 O -0.383 6.383 20 C -0.096 4.096 21 C -0.092 4.092 22 C -0.139 4.139 23 C -0.098 4.098 24 C -0.110 4.110 25 C -0.084 4.084 26 C -0.195 4.195 27 C -0.037 4.037 28 N -0.161 5.161 29 C 0.037 3.963 30 C -0.001 4.001 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.178 0.822 46 H 0.097 0.903 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.074 -4.686 -30.146 30.663 hybrid contribution 0.408 -1.530 -0.874 1.809 sum 3.482 -6.216 -31.021 31.828 Atomic orbital electron populations 1.22407 0.98606 1.00891 1.00496 1.20125 0.92052 0.95441 0.84327 0.92366 1.42796 1.79818 1.09408 1.07141 1.19030 1.36936 0.95460 0.85661 0.89196 1.24642 1.01357 0.97387 0.95577 1.69695 1.52685 1.35584 1.00272 0.86613 0.78767 0.86857 0.76700 1.20868 1.21819 1.20370 1.22740 0.94171 1.00314 0.95403 0.90221 1.22690 0.97659 1.01184 0.94599 1.22203 0.86923 0.98593 0.94764 1.48478 1.15036 1.62967 1.08666 1.17497 0.81667 0.77528 0.87009 1.90844 1.39173 1.49029 1.59254 1.19827 1.01961 0.93995 0.93827 1.21553 0.96174 0.98401 0.93057 1.20842 1.00004 0.98150 0.94860 1.21129 0.96719 0.92448 0.99528 1.18795 1.02257 0.96162 0.93830 1.21471 0.94741 0.91746 1.00452 1.21957 1.02057 1.00707 0.94730 1.23134 0.92514 0.94294 0.93778 1.68137 1.09540 1.00116 1.38338 1.18556 0.96172 0.92810 0.88786 1.22261 0.94928 1.03141 0.79786 0.92283 0.94077 0.93654 0.80657 0.93102 0.90070 0.89964 0.91476 0.91705 0.84274 0.84725 0.84866 0.84181 0.84305 0.82169 0.90319 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.34 37.16 0.35 -2.35 16 2 C 0.19 3.45 2.41 -67.93 -0.16 3.29 16 3 H 0.06 1.09 8.05 -51.92 -0.42 0.67 16 4 N -0.75 -17.46 4.62 -53.42 -0.25 -17.71 16 5 C -0.24 -6.76 10.41 -15.06 -0.16 -6.91 16 6 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -29.74 13.97 55.49 0.78 -28.97 16 9 Si 0.88 22.87 27.74 -169.99 -4.71 18.16 16 10 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 13 C -0.11 -1.59 2.63 -88.41 -0.23 -1.83 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -1.34 5.60 -24.83 -0.14 -1.47 16 16 C 0.10 1.05 5.63 -3.06 -0.02 1.03 16 17 N -0.62 -9.29 3.33 -171.78 -0.57 -9.86 16 18 C 0.58 9.80 7.15 -12.52 -0.09 9.71 16 19 O -0.51 -10.92 16.77 5.27 0.09 -10.83 16 20 C -0.09 -1.26 5.45 -104.61 -0.57 -1.83 16 21 C -0.07 -0.69 8.50 -39.16 -0.33 -1.02 16 22 C -0.12 -0.86 9.93 -40.03 -0.40 -1.26 16 23 C -0.08 -0.58 9.75 -39.43 -0.38 -0.96 16 24 C -0.11 -1.08 5.74 -106.83 -0.61 -1.69 16 25 C -0.06 -0.44 9.89 -39.19 -0.39 -0.82 16 26 C -0.17 -1.33 10.03 -39.79 -0.40 -1.73 16 27 C 0.14 1.45 11.15 -17.44 -0.19 1.25 16 28 N -0.45 -6.81 9.35 -10.76 -0.10 -6.91 16 29 C 0.16 2.18 6.59 -84.58 -0.56 1.63 16 30 C 0.12 2.06 6.06 -2.53 -0.02 2.04 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.54 7.51 -51.93 -0.39 0.15 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.36 8.50 5.66 -40.82 -0.23 8.27 16 35 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 36 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 37 H 0.08 0.75 8.14 -51.94 -0.42 0.32 16 38 H 0.07 0.56 5.97 -51.93 -0.31 0.25 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.14 1.09 5.86 -52.48 -0.31 0.78 16 41 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 43 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 44 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 46 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 47 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -37.57 382.81 -10.13 -47.70 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.73 Total: 5.50 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -4.40 Total: -2.84 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.14 Total: -63.45 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.71 Total: 18.16 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.57 -10.13 -47.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699941712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.880 kcal (2) G-P(sol) polarization free energy of solvation -37.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds