Wall clock time and date at job start Sat Apr 11 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47187 * 2 1 4 4 C 1.53002 * 109.47310 * 240.00005 * 2 1 3 5 5 N 1.46900 * 109.46888 * 65.00145 * 4 2 1 6 6 C 1.46907 * 110.99769 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47163 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99783 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00241 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00453 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99869 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00187 * 180.02562 * 10 9 7 13 13 N 1.31413 * 120.00467 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00214 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47232 * 59.99378 * 14 12 10 16 16 H 1.48499 * 109.47714 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47124 * 299.99915 * 14 12 10 18 18 C 1.53000 * 109.47033 * 119.99772 * 2 1 3 19 19 N 1.46497 * 109.47039 * 294.99843 * 18 2 1 20 20 C 1.34778 * 119.99813 * 179.97438 * 19 18 2 21 21 O 1.21743 * 119.99866 * 354.58758 * 20 19 18 22 22 C 1.46374 * 120.00348 * 174.59077 * 20 19 18 23 23 C 1.36726 * 126.81989 * 4.93637 * 22 20 19 24 24 N 1.33223 * 107.96067 * 179.97438 * 23 22 20 25 25 C 1.31542 * 109.76160 * 0.02562 * 24 23 22 26 26 O 1.35205 * 125.49194 * 179.97438 * 25 24 23 27 27 N 1.34940 * 109.01309 * 359.72496 * 25 24 23 28 28 C 1.46502 * 126.54436 * 180.27227 * 27 25 24 29 29 H 1.08997 * 109.47200 * 300.00294 * 1 2 3 30 30 H 1.09000 * 109.47265 * 60.00114 * 1 2 3 31 31 H 1.08996 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46710 * 305.00228 * 4 2 1 33 33 H 1.08996 * 109.47002 * 185.00192 * 4 2 1 34 34 H 1.00899 * 111.00297 * 56.04854 * 5 4 2 35 35 H 1.09000 * 109.46582 * 300.00080 * 6 5 4 36 36 H 1.09000 * 109.47309 * 59.99653 * 6 5 4 37 37 H 0.97005 * 120.00146 * 0.02562 * 9 7 6 38 38 H 0.96996 * 120.00784 * 180.02562 * 13 12 10 39 39 H 1.08997 * 109.46813 * 55.00502 * 18 2 1 40 40 H 1.08997 * 109.46817 * 175.00081 * 18 2 1 41 41 H 0.96990 * 120.00215 * 0.02562 * 19 18 2 42 42 H 1.07995 * 126.02386 * 0.02562 * 23 22 20 43 43 H 0.96703 * 113.99907 * 90.02795 * 26 25 24 44 44 H 1.09000 * 109.47335 * 272.55252 * 28 27 25 45 45 H 1.08996 * 109.47303 * 32.55514 * 28 27 25 46 46 H 1.08997 * 109.47122 * 152.55502 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6514 0.0375 -2.4456 6 6 2.1248 -0.6271 -3.6672 7 6 1.7079 0.1780 -4.8709 8 8 1.0786 1.2048 -4.7254 9 7 2.0350 -0.2421 -6.1090 10 6 1.6552 0.4900 -7.2041 11 1 1.0935 1.4033 -7.0747 12 6 1.9920 0.0565 -8.4805 13 7 2.6750 -1.0551 -8.6381 14 14 1.4751 1.0545 -9.9726 15 1 2.0664 2.4141 -9.8878 16 1 1.9531 0.3824 -11.2075 17 1 -0.0057 1.1601 -10.0087 18 6 2.0399 -0.7212 1.2493 19 7 1.6524 0.0355 2.4423 20 6 1.9955 -0.4135 3.6660 21 8 2.5404 -1.4955 3.7867 22 6 1.7130 0.3998 4.8498 23 6 1.0287 1.5828 4.8869 24 7 0.9919 1.9966 6.1527 25 6 1.6205 1.1336 6.9211 26 8 1.7748 1.2417 8.2600 27 7 2.0817 0.1204 6.1585 28 6 2.8313 -1.0496 6.6228 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7197 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.9882 0.9873 -2.3967 35 1 3.2117 -0.7050 -3.6405 36 1 1.6905 -1.6249 -3.7297 37 1 2.5385 -1.0631 -6.2254 38 1 2.9104 -1.3575 -9.5291 39 1 1.6054 -1.7197 1.2951 40 1 3.1262 -0.7994 1.2056 41 1 1.1483 0.8591 2.3517 42 1 0.5937 2.0918 4.0395 43 1 1.0643 0.8317 8.7721 44 1 3.8958 -0.8162 6.6388 45 1 2.5027 -1.3165 7.6272 46 1 2.6529 -1.8866 5.9478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753625584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:57 Heat of formation + Delta-G solvation = -48.838239 kcal Electronic energy + Delta-G solvation = -27913.667698 eV Core-core repulsion = 23646.932878 eV Total energy + Delta-G solvation = -4266.734819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.75388 -39.87070 -38.38924 -37.89827 -37.23163 -35.18849 -34.47829 -33.86974 -32.53512 -31.20543 -29.95435 -27.62424 -27.42447 -26.71431 -24.93697 -23.68955 -22.81819 -22.04464 -20.95035 -20.36483 -19.23737 -19.14386 -18.03584 -17.82193 -16.97062 -16.66410 -16.22315 -15.98486 -15.68472 -15.40098 -14.97782 -14.83512 -14.64723 -14.42149 -14.29195 -14.04708 -13.66806 -13.47387 -13.36244 -13.22844 -13.12557 -12.72967 -12.64158 -12.40679 -11.96464 -11.69499 -11.52286 -11.17850 -11.12495 -10.98968 -10.92406 -10.78881 -10.44507 -10.36639 -10.29374 -10.21562 -9.53341 -9.50296 -8.98138 -8.47259 -8.07121 -7.96291 -6.41919 -3.82940 0.67064 1.64272 2.10368 2.81107 2.86375 3.20027 3.24883 3.25849 3.30170 3.90538 4.06463 4.12479 4.23437 4.27986 4.48074 4.66273 4.67435 4.73355 4.80461 4.89716 5.03671 5.15230 5.25174 5.28929 5.40329 5.42940 5.53877 5.65209 5.72245 5.82255 5.84032 5.86175 5.90739 5.96263 5.97537 6.15200 6.26069 6.37821 6.91745 7.01729 7.17744 7.25888 7.54671 7.63166 7.71905 8.05753 8.60841 9.17435 9.53977 10.05330 10.75683 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038605 B = 0.001428 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.112858 B =19600.128742 C =20100.843025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.079 0.921 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.127 3.873 19 N -0.711 5.711 20 C 0.596 3.404 21 O -0.545 6.545 22 C -0.080 4.080 23 C 0.057 3.943 24 N -0.486 5.486 25 C 0.397 3.603 26 O -0.439 6.439 27 N -0.427 5.427 28 C 0.065 3.935 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.349 0.651 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.405 0.595 42 H 0.187 0.813 43 H 0.405 0.595 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 -2.030 30.671 30.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.097 0.903 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.004 3.996 19 N -0.362 5.362 20 C 0.382 3.618 21 O -0.424 6.424 22 C -0.196 4.196 23 C -0.098 4.098 24 N -0.214 5.214 25 C 0.097 3.903 26 O -0.240 6.240 27 N -0.120 5.120 28 C -0.077 4.077 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.168 0.832 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.240 0.760 42 H 0.204 0.796 43 H 0.263 0.737 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.657 -1.630 30.956 31.006 hybrid contribution 0.899 -0.541 -0.808 1.324 sum 0.242 -2.170 30.148 30.227 Atomic orbital electron populations 1.21773 0.93575 1.02280 1.02247 1.21359 0.97763 1.00085 0.92777 0.90283 1.21887 0.97352 0.97983 0.89194 1.60030 1.64173 1.05851 0.99757 1.21664 0.97747 0.98655 0.90105 1.19806 0.85576 0.87948 0.84085 1.90520 1.44151 1.26403 1.85740 1.41859 1.49439 1.24256 1.04444 1.19658 1.32940 1.06799 0.83635 0.87963 1.25257 0.96887 0.96629 0.99104 1.69601 1.38786 1.21752 1.24174 0.85916 0.79067 0.79381 0.79838 1.19923 1.20986 1.19881 1.21470 1.00177 0.95537 0.82450 1.45601 1.57480 1.28169 1.04969 1.16572 0.78599 0.84635 0.81959 1.90816 1.43841 1.21468 1.86256 1.20563 1.12003 1.01723 0.85307 1.22594 0.99617 0.92734 0.94856 1.70333 1.20802 1.27443 1.02868 1.20266 0.98566 0.86357 0.85080 1.84839 1.50565 1.79079 1.09495 1.45662 1.41190 1.18507 1.06647 1.22321 0.96713 0.86857 1.01824 0.93603 0.90286 0.92719 0.90686 0.95248 0.83189 0.93877 0.89591 0.77457 0.91819 0.90732 0.91153 0.75969 0.79590 0.73718 0.89924 0.89549 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.95 37.16 0.33 -0.95 16 2 C -0.10 -0.86 2.57 -90.62 -0.23 -1.09 16 3 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 4 C 0.07 0.71 5.07 -3.82 -0.02 0.69 16 5 N -0.67 -9.84 5.58 -115.05 -0.64 -10.48 16 6 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 7 C 0.44 10.19 7.82 -10.99 -0.09 10.11 16 8 O -0.58 -15.54 15.78 5.54 0.09 -15.45 16 9 N -0.56 -14.13 5.29 -10.97 -0.06 -14.19 16 10 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 11 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 14 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.13 1.03 5.07 -4.04 -0.02 1.01 16 19 N -0.71 -5.28 5.27 -61.71 -0.33 -5.61 16 20 C 0.60 5.69 7.77 -12.99 -0.10 5.59 16 21 O -0.54 -6.70 14.84 5.15 0.08 -6.63 16 22 C -0.08 -0.70 6.92 -81.98 -0.57 -1.27 16 23 C 0.06 0.46 11.36 -17.50 -0.20 0.26 16 24 N -0.49 -4.86 11.22 -14.62 -0.16 -5.02 16 25 C 0.40 3.41 9.01 -89.59 -0.81 2.61 16 26 O -0.44 -2.64 13.53 -17.31 -0.23 -2.88 16 27 N -0.43 -3.53 3.20 -122.12 -0.39 -3.92 16 28 C 0.06 0.38 10.75 59.85 0.64 1.02 16 29 H 0.04 0.32 7.18 -51.93 -0.37 -0.05 16 30 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.35 5.33 8.43 -39.29 -0.33 5.00 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.40 2.12 6.58 -40.82 -0.27 1.85 16 42 H 0.19 0.88 7.45 -52.49 -0.39 0.49 16 43 H 0.41 0.26 9.06 45.56 0.41 0.67 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.11 0.78 6.30 -51.93 -0.33 0.46 16 LS Contribution 392.80 15.07 5.92 5.92 Total: -1.00 -36.07 392.80 -7.10 -43.17 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.74 Total: 12.00 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -1.33 Total: 10.84 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.86 Total: -62.87 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.07 Total: -24.96 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.07 -7.10 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753625584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.672 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds