Wall clock time and date at job start Sat Apr 11 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47187 * 2 1 4 4 C 1.53002 * 109.47310 * 240.00005 * 2 1 3 5 5 N 1.46900 * 109.46888 * 65.00145 * 4 2 1 6 6 C 1.46907 * 110.99769 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47163 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99783 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00241 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00453 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99869 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00187 * 180.02562 * 10 9 7 13 13 N 1.31413 * 120.00467 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00214 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47232 * 59.99378 * 14 12 10 16 16 H 1.48499 * 109.47714 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47124 * 299.99915 * 14 12 10 18 18 C 1.53000 * 109.47033 * 119.99772 * 2 1 3 19 19 N 1.46497 * 109.47039 * 294.99843 * 18 2 1 20 20 C 1.34778 * 119.99813 * 179.97438 * 19 18 2 21 21 O 1.21743 * 119.99866 * 354.58758 * 20 19 18 22 22 C 1.46374 * 120.00348 * 174.59077 * 20 19 18 23 23 C 1.36726 * 126.81989 * 4.93637 * 22 20 19 24 24 N 1.33223 * 107.96067 * 179.97438 * 23 22 20 25 25 C 1.31542 * 109.76160 * 0.02562 * 24 23 22 26 26 O 1.35205 * 125.49194 * 179.97438 * 25 24 23 27 27 N 1.34940 * 109.01309 * 359.72496 * 25 24 23 28 28 C 1.46502 * 126.54436 * 180.27227 * 27 25 24 29 29 H 1.08997 * 109.47200 * 300.00294 * 1 2 3 30 30 H 1.09000 * 109.47265 * 60.00114 * 1 2 3 31 31 H 1.08996 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46710 * 305.00228 * 4 2 1 33 33 H 1.08996 * 109.47002 * 185.00192 * 4 2 1 34 34 H 1.00899 * 111.00297 * 56.04854 * 5 4 2 35 35 H 1.09000 * 109.46582 * 300.00080 * 6 5 4 36 36 H 1.09000 * 109.47309 * 59.99653 * 6 5 4 37 37 H 0.97005 * 120.00146 * 0.02562 * 9 7 6 38 38 H 0.96996 * 120.00784 * 180.02562 * 13 12 10 39 39 H 1.08997 * 109.46813 * 55.00502 * 18 2 1 40 40 H 1.08997 * 109.46817 * 175.00081 * 18 2 1 41 41 H 0.96990 * 120.00215 * 0.02562 * 19 18 2 42 42 H 1.07995 * 126.02386 * 0.02562 * 23 22 20 43 43 H 0.96703 * 113.99907 * 90.02795 * 26 25 24 44 44 H 1.09000 * 109.47335 * 272.55252 * 28 27 25 45 45 H 1.08996 * 109.47303 * 32.55514 * 28 27 25 46 46 H 1.08997 * 109.47122 * 152.55502 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6514 0.0375 -2.4456 6 6 2.1248 -0.6271 -3.6672 7 6 1.7079 0.1780 -4.8709 8 8 1.0786 1.2048 -4.7254 9 7 2.0350 -0.2421 -6.1090 10 6 1.6552 0.4900 -7.2041 11 1 1.0935 1.4033 -7.0747 12 6 1.9920 0.0565 -8.4805 13 7 2.6750 -1.0551 -8.6381 14 14 1.4751 1.0545 -9.9726 15 1 2.0664 2.4141 -9.8878 16 1 1.9531 0.3824 -11.2075 17 1 -0.0057 1.1601 -10.0087 18 6 2.0399 -0.7212 1.2493 19 7 1.6524 0.0355 2.4423 20 6 1.9955 -0.4135 3.6660 21 8 2.5404 -1.4955 3.7867 22 6 1.7130 0.3998 4.8498 23 6 1.0287 1.5828 4.8869 24 7 0.9919 1.9966 6.1527 25 6 1.6205 1.1336 6.9211 26 8 1.7748 1.2417 8.2600 27 7 2.0817 0.1204 6.1585 28 6 2.8313 -1.0496 6.6228 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7197 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.9882 0.9873 -2.3967 35 1 3.2117 -0.7050 -3.6405 36 1 1.6905 -1.6249 -3.7297 37 1 2.5385 -1.0631 -6.2254 38 1 2.9104 -1.3575 -9.5291 39 1 1.6054 -1.7197 1.2951 40 1 3.1262 -0.7994 1.2056 41 1 1.1483 0.8591 2.3517 42 1 0.5937 2.0918 4.0395 43 1 1.0643 0.8317 8.7721 44 1 3.8958 -0.8162 6.6388 45 1 2.5027 -1.3165 7.6272 46 1 2.6529 -1.8866 5.9478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753625584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:57 Heat of formation + Delta-G solvation = -81.295869 kcal Electronic energy + Delta-G solvation = -27915.075166 eV Core-core repulsion = 23646.932878 eV Total energy + Delta-G solvation = -4268.142288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.34355 -40.59314 -40.12040 -38.43304 -38.16475 -36.23899 -35.73965 -35.08250 -33.52789 -33.16106 -30.62130 -28.76573 -28.12440 -27.48105 -26.50284 -24.77024 -23.68432 -22.62448 -21.68439 -21.25002 -20.82004 -19.87773 -19.69283 -18.59890 -17.81764 -17.54477 -17.22664 -16.95742 -16.75280 -16.45275 -16.19898 -15.99441 -15.62726 -15.47780 -15.20284 -15.11057 -14.91991 -14.54000 -14.34506 -13.90759 -13.76807 -13.70125 -13.50453 -13.36477 -13.20880 -13.13746 -12.96815 -12.81677 -12.41600 -12.11809 -11.97704 -11.92224 -11.67104 -11.48002 -11.45605 -11.04859 -10.91942 -10.31619 -10.22270 -9.99662 -9.57588 -9.25523 -8.44878 -5.93700 0.06633 1.09511 1.41310 1.43220 1.50248 1.54004 2.08029 2.16575 2.20019 2.31323 2.78987 2.98169 3.22680 3.54561 3.56315 3.78236 3.90669 3.91711 4.01271 4.10611 4.25341 4.29959 4.35909 4.51344 4.54645 4.60182 4.61573 4.67360 4.78685 4.88653 4.94280 5.01721 5.14337 5.23726 5.31394 5.42274 5.43139 5.51735 5.59850 5.91421 6.13186 6.37614 6.47073 6.54169 6.62098 6.67825 7.06453 7.14403 7.58690 8.13853 8.72205 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038605 B = 0.001428 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.112858 B =19600.128742 C =20100.843025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.086 0.914 4 C 0.066 3.934 5 N -0.677 5.677 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.335 4.335 11 H 0.079 0.921 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.135 3.865 19 N -0.699 5.699 20 C 0.597 3.403 21 O -0.578 6.578 22 C -0.099 4.099 23 C 0.063 3.937 24 N -0.519 5.519 25 C 0.399 3.601 26 O -0.443 6.443 27 N -0.432 5.432 28 C 0.063 3.937 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.416 0.584 42 H 0.214 0.786 43 H 0.428 0.572 44 H 0.084 0.916 45 H 0.115 0.885 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 -2.096 31.656 31.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.063 4.063 5 N -0.310 5.310 6 C -0.067 4.067 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.212 5.212 10 C -0.465 4.465 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.816 3.184 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.198 1.198 18 C 0.011 3.989 19 N -0.351 5.351 20 C 0.384 3.616 21 O -0.459 6.459 22 C -0.215 4.215 23 C -0.092 4.092 24 N -0.248 5.248 25 C 0.100 3.900 26 O -0.247 6.247 27 N -0.124 5.124 28 C -0.078 4.078 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.163 0.837 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.231 0.769 43 H 0.290 0.710 44 H 0.102 0.898 45 H 0.133 0.867 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.556 -1.716 31.966 32.017 hybrid contribution 0.849 -0.514 -0.987 1.400 sum 0.293 -2.231 30.980 31.061 Atomic orbital electron populations 1.21727 0.93851 1.02001 1.01997 1.21218 0.97317 1.00259 0.91938 0.89532 1.21972 0.98266 0.97840 0.88248 1.60024 1.64709 1.05965 1.00260 1.21519 0.99069 0.98024 0.88124 1.20912 0.83838 0.87638 0.85088 1.90488 1.45548 1.28324 1.86512 1.41939 1.50044 1.24385 1.04785 1.19645 1.34432 1.07083 0.85345 0.90258 1.26024 0.96443 0.97549 1.01186 1.69663 1.38914 1.22499 1.25070 0.84996 0.78612 0.78044 0.76730 1.19672 1.19569 1.19754 1.21321 0.99986 0.95268 0.82275 1.45479 1.56982 1.28365 1.04224 1.16684 0.78115 0.84235 0.82537 1.90800 1.45520 1.22862 1.86738 1.20569 1.13265 1.02211 0.85447 1.23078 0.98664 0.92304 0.95126 1.70346 1.22215 1.28507 1.03779 1.20390 0.97718 0.86069 0.85855 1.84795 1.51939 1.79473 1.08501 1.45816 1.41184 1.18913 1.06518 1.22430 0.96734 0.85683 1.02933 0.91487 0.92877 0.93023 0.90286 0.93977 0.83653 0.91651 0.87946 0.77005 0.91336 0.91201 0.91312 0.74566 0.76926 0.71017 0.89780 0.86708 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.95 71.98 0.64 -1.66 16 2 C -0.09 -1.34 2.57 -10.79 -0.03 -1.37 16 3 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 4 C 0.07 1.29 5.07 86.30 0.44 1.73 16 5 N -0.68 -19.24 5.58 -517.92 -2.89 -22.13 16 6 C 0.07 2.12 6.17 85.55 0.53 2.65 16 7 C 0.44 20.38 7.82 87.66 0.69 21.06 16 8 O -0.62 -33.76 15.78 -3.08 -0.05 -33.81 16 9 N -0.57 -29.17 5.29 -307.00 -1.62 -30.79 16 10 C -0.34 -18.96 9.68 84.04 0.81 -18.14 16 11 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 12 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 13 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 14 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 C 0.14 1.97 5.07 86.38 0.44 2.40 16 19 N -0.70 -9.21 5.27 -467.36 -2.46 -11.67 16 20 C 0.60 10.83 7.77 86.36 0.67 11.50 16 21 O -0.58 -14.00 14.84 -4.49 -0.07 -14.07 16 22 C -0.10 -1.65 6.92 39.80 0.28 -1.37 16 23 C 0.06 0.93 11.36 84.13 0.96 1.89 16 24 N -0.52 -9.74 11.22 -313.65 -3.52 -13.26 16 25 C 0.40 6.37 9.01 179.99 1.62 7.99 16 26 O -0.44 -4.59 13.53 -84.86 -1.15 -5.74 16 27 N -0.43 -6.69 3.20 -652.01 -2.09 -8.78 16 28 C 0.06 0.68 10.75 127.77 1.37 2.05 16 29 H 0.07 0.81 7.18 -2.39 -0.02 0.79 16 30 H 0.05 1.19 7.75 -2.39 -0.02 1.17 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.34 10.27 8.43 -89.69 -0.76 9.52 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.40 19.11 7.90 -92.70 -0.73 18.37 16 38 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.42 3.43 6.58 -92.72 -0.61 2.82 16 42 H 0.21 1.55 7.45 -2.91 -0.02 1.53 16 43 H 0.43 -0.29 9.06 -74.06 -0.67 -0.96 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.10 1.35 6.30 -2.39 -0.02 1.34 16 Total: -1.00 -78.60 392.80 -4.36 -82.96 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -1.71 Total: 33.22 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 8.88 Total: 28.54 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -12.30 Total: -135.80 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -1.26 Total: -53.62 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -78.60 -4.36 -82.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753625584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.662 kcal (2) G-P(sol) polarization free energy of solvation -78.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds