Wall clock time and date at job start Sat Apr 11 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47406 * 2 1 4 4 C 1.53000 * 109.47105 * 119.99746 * 2 1 3 5 5 N 1.46901 * 109.47201 * 295.00352 * 4 2 1 6 6 C 1.46904 * 111.00055 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46959 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00240 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99697 * 180.02562 * 7 6 5 10 10 C 1.37103 * 119.99694 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00127 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99594 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99646 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47358 * 59.99829 * 14 12 10 16 16 H 1.48501 * 109.46683 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47075 * 299.99631 * 14 12 10 18 18 C 1.52996 * 109.47419 * 240.00105 * 2 1 3 19 19 N 1.46497 * 109.47147 * 64.99705 * 18 2 1 20 20 C 1.34782 * 120.00008 * 180.02562 * 19 18 2 21 21 O 1.21736 * 119.99544 * 5.12909 * 20 19 18 22 22 C 1.46376 * 120.00041 * 185.13020 * 20 19 18 23 23 C 1.36715 * 126.82651 * 354.46294 * 22 20 19 24 24 N 1.33228 * 107.96219 * 180.02562 * 23 22 20 25 25 C 1.31529 * 109.76219 * 359.97438 * 24 23 22 26 26 O 1.35203 * 125.49393 * 180.02562 * 25 24 23 27 27 N 1.34952 * 109.01648 * 0.02562 * 25 24 23 28 28 C 1.46501 * 126.54489 * 179.97438 * 27 25 24 29 29 H 1.09004 * 109.47422 * 300.00526 * 1 2 3 30 30 H 1.09007 * 109.46959 * 60.00079 * 1 2 3 31 31 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46772 * 55.00012 * 4 2 1 33 33 H 1.08999 * 109.47210 * 174.99886 * 4 2 1 34 34 H 1.00900 * 111.00335 * 56.04312 * 5 4 2 35 35 H 1.09003 * 109.46528 * 299.99712 * 6 5 4 36 36 H 1.08992 * 109.47308 * 59.99869 * 6 5 4 37 37 H 0.96998 * 120.00215 * 359.97438 * 9 7 6 38 38 H 0.96996 * 119.99559 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.46872 * 305.00054 * 18 2 1 40 40 H 1.09002 * 109.47183 * 185.00147 * 18 2 1 41 41 H 0.96999 * 120.00333 * 0.02562 * 19 18 2 42 42 H 1.08002 * 126.02141 * 359.77294 * 23 22 20 43 43 H 0.96704 * 113.99669 * 269.97388 * 26 25 24 44 44 H 1.08994 * 109.46988 * 274.27565 * 28 27 25 45 45 H 1.09000 * 109.47108 * 34.27732 * 28 27 25 46 46 H 1.09004 * 109.46870 * 154.27513 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4456 6 6 2.1257 -0.6264 3.6672 7 6 1.7085 0.1787 4.8708 8 8 1.0785 1.2049 4.7254 9 7 2.0365 -0.2410 6.1089 10 6 1.6574 0.4918 7.2039 11 1 1.0964 1.4055 7.0744 12 6 1.9951 0.0588 8.4804 13 7 2.6773 -1.0532 8.6379 14 14 1.4792 1.0576 9.9723 15 1 -0.0015 1.1634 10.0093 16 1 1.9581 0.3860 11.2071 17 1 2.0706 2.4170 9.8865 18 6 2.0400 -0.7212 -1.2492 19 7 1.6524 0.0354 -2.4423 20 6 1.9956 -0.4136 -3.6660 21 8 2.5452 -1.4932 -3.7861 22 6 1.7076 0.3969 -4.8503 23 6 1.0081 1.5709 -4.8895 24 7 0.9713 1.9852 -6.1552 25 6 1.6142 1.1311 -6.9215 26 8 1.7727 1.2422 -8.2596 27 7 2.0901 0.1261 -6.1569 28 6 2.8627 -1.0301 -6.6179 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6053 -1.7197 1.2952 33 1 3.1263 -0.7994 1.2056 34 1 0.6527 0.1794 2.4753 35 1 1.6920 -1.6245 3.7301 36 1 3.2125 -0.7036 3.6402 37 1 2.5407 -1.0614 6.2252 38 1 2.9126 -1.3556 9.5290 39 1 1.6054 -1.7198 -1.2951 40 1 3.1264 -0.7994 -1.2055 41 1 1.1488 0.8594 -2.3517 42 1 0.5603 2.0720 -4.0440 43 1 1.0698 0.8233 -8.7751 44 1 2.1813 -1.8133 -6.9501 45 1 3.5044 -0.7312 -7.4467 46 1 3.4772 -1.4060 -5.7998 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753625585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:01 Heat of formation + Delta-G solvation = -48.515000 kcal Electronic energy + Delta-G solvation = -27918.222760 eV Core-core repulsion = 23651.501957 eV Total energy + Delta-G solvation = -4266.720803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.74936 -39.87639 -38.41145 -37.89311 -37.27771 -35.19529 -34.47272 -33.87258 -32.51143 -31.20364 -29.96152 -27.61858 -27.43448 -26.85084 -24.96298 -23.71814 -22.83567 -22.03980 -20.90899 -20.24699 -19.25900 -19.13183 -18.02221 -17.83369 -17.00322 -16.75464 -16.34967 -15.87837 -15.68386 -15.50100 -14.97864 -14.84955 -14.61078 -14.41499 -14.26445 -14.03544 -13.72895 -13.47089 -13.26463 -13.23325 -13.01593 -12.81610 -12.72197 -12.65923 -12.07793 -11.60365 -11.54933 -11.26004 -11.07584 -11.00385 -10.93375 -10.80141 -10.44426 -10.36057 -10.30334 -10.21496 -9.53148 -9.50304 -8.97792 -8.47406 -8.07959 -7.96338 -6.41911 -3.82868 0.67184 1.64807 2.10300 2.81108 2.86681 3.20108 3.25838 3.25893 3.30260 3.90453 4.06962 4.13172 4.25176 4.28577 4.49251 4.65376 4.66237 4.69385 4.80127 4.83819 5.04161 5.11758 5.24984 5.30958 5.37207 5.40242 5.50712 5.56598 5.68264 5.77434 5.80721 5.83708 5.91450 5.95648 5.97706 6.07575 6.15443 6.26448 6.92062 7.01766 7.18320 7.26141 7.54755 7.64077 7.71924 8.05800 8.60917 9.17446 9.53955 10.05332 10.75705 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038539 B = 0.001428 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.367863 B =19600.617854 C =20099.876976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 H 0.091 0.909 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.128 3.872 19 N -0.711 5.711 20 C 0.596 3.404 21 O -0.545 6.545 22 C -0.079 4.079 23 C 0.057 3.943 24 N -0.486 5.486 25 C 0.397 3.603 26 O -0.439 6.439 27 N -0.428 5.428 28 C 0.064 3.936 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.349 0.651 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.405 0.595 42 H 0.187 0.813 43 H 0.406 0.594 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.658 -2.876 -30.686 30.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.122 4.122 3 H 0.110 0.890 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.005 3.995 19 N -0.362 5.362 20 C 0.382 3.618 21 O -0.423 6.423 22 C -0.196 4.196 23 C -0.099 4.099 24 N -0.214 5.214 25 C 0.097 3.903 26 O -0.240 6.240 27 N -0.120 5.120 28 C -0.078 4.078 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.170 0.830 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.240 0.760 42 H 0.204 0.796 43 H 0.263 0.737 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.817 -1.767 -31.035 31.095 hybrid contribution -0.667 -1.477 0.911 1.858 sum -1.483 -3.243 -30.124 30.334 Atomic orbital electron populations 1.21917 0.94601 1.02145 1.02447 1.21380 0.96576 1.01319 0.92894 0.89035 1.21872 1.00800 0.94411 0.89309 1.60080 1.21061 1.49034 0.99999 1.21669 1.01185 0.95373 0.89999 1.19809 0.85651 0.87946 0.84037 1.90518 1.44395 1.26209 1.85708 1.41859 1.49452 1.24236 1.04429 1.19663 1.32976 1.06778 0.83627 0.87957 1.25261 0.96873 0.96638 0.99107 1.69604 1.38797 1.21730 1.24167 0.85914 0.79006 0.79446 0.79827 1.19928 1.20983 1.19873 1.21453 1.00430 0.95292 0.82371 1.45609 1.57527 1.28138 1.04974 1.16573 0.78664 0.84600 0.81954 1.90822 1.43617 1.21541 1.86359 1.20570 1.11592 1.01994 0.85398 1.22590 0.99656 0.92750 0.94856 1.70329 1.20789 1.27368 1.02933 1.20247 0.98189 0.86730 0.85087 1.84817 1.51305 1.78421 1.09482 1.45659 1.40421 1.19266 1.06695 1.22322 0.96617 0.85956 1.02880 0.91278 0.92643 0.92588 0.95139 0.90734 0.83015 0.93861 0.89553 0.77448 0.91820 0.90930 0.90879 0.75978 0.79595 0.73658 0.89966 0.89231 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.84 37.16 0.33 -0.92 16 2 C -0.10 -0.88 2.63 -90.62 -0.24 -1.12 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.07 0.72 5.14 -3.82 -0.02 0.70 16 5 N -0.67 -10.10 6.12 -115.06 -0.70 -10.80 16 6 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 7 C 0.44 10.26 7.82 -10.99 -0.09 10.17 16 8 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 11 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 14 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.13 1.04 5.07 -4.05 -0.02 1.02 16 19 N -0.71 -5.25 5.27 -61.71 -0.33 -5.58 16 20 C 0.60 5.68 7.76 -12.98 -0.10 5.57 16 21 O -0.54 -6.69 14.89 5.16 0.08 -6.62 16 22 C -0.08 -0.70 6.92 -81.98 -0.57 -1.27 16 23 C 0.06 0.46 11.35 -17.50 -0.20 0.26 16 24 N -0.49 -4.85 11.22 -14.62 -0.16 -5.02 16 25 C 0.40 3.41 9.01 -89.59 -0.81 2.60 16 26 O -0.44 -2.64 13.53 -17.30 -0.23 -2.87 16 27 N -0.43 -3.53 3.20 -122.12 -0.39 -3.92 16 28 C 0.06 0.37 10.70 59.85 0.64 1.01 16 29 H 0.07 0.67 6.68 -51.93 -0.35 0.32 16 30 H 0.05 0.35 7.18 -51.93 -0.37 -0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.35 5.42 6.68 -39.29 -0.26 5.16 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.40 2.10 6.58 -40.82 -0.27 1.83 16 42 H 0.19 0.88 7.45 -52.49 -0.39 0.49 16 43 H 0.41 0.27 9.06 45.56 0.41 0.69 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.11 0.80 6.40 -51.93 -0.33 0.47 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -36.31 390.64 -7.09 -43.40 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.62 Total: 12.18 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: -1.34 Total: 10.88 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.92 Total: -63.21 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.07 Total: -25.05 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.31 -7.09 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753625585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.116 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds