Wall clock time and date at job start Sat Apr 11 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47406 * 2 1 4 4 C 1.53000 * 109.47105 * 119.99746 * 2 1 3 5 5 N 1.46901 * 109.47201 * 295.00352 * 4 2 1 6 6 C 1.46904 * 111.00055 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46959 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00240 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99697 * 180.02562 * 7 6 5 10 10 C 1.37103 * 119.99694 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00127 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99594 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99646 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47358 * 59.99829 * 14 12 10 16 16 H 1.48501 * 109.46683 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47075 * 299.99631 * 14 12 10 18 18 C 1.52996 * 109.47419 * 240.00105 * 2 1 3 19 19 N 1.46497 * 109.47147 * 64.99705 * 18 2 1 20 20 C 1.34782 * 120.00008 * 180.02562 * 19 18 2 21 21 O 1.21736 * 119.99544 * 5.12909 * 20 19 18 22 22 C 1.46376 * 120.00041 * 185.13020 * 20 19 18 23 23 C 1.36715 * 126.82651 * 354.46294 * 22 20 19 24 24 N 1.33228 * 107.96219 * 180.02562 * 23 22 20 25 25 C 1.31529 * 109.76219 * 359.97438 * 24 23 22 26 26 O 1.35203 * 125.49393 * 180.02562 * 25 24 23 27 27 N 1.34952 * 109.01648 * 0.02562 * 25 24 23 28 28 C 1.46501 * 126.54489 * 179.97438 * 27 25 24 29 29 H 1.09004 * 109.47422 * 300.00526 * 1 2 3 30 30 H 1.09007 * 109.46959 * 60.00079 * 1 2 3 31 31 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46772 * 55.00012 * 4 2 1 33 33 H 1.08999 * 109.47210 * 174.99886 * 4 2 1 34 34 H 1.00900 * 111.00335 * 56.04312 * 5 4 2 35 35 H 1.09003 * 109.46528 * 299.99712 * 6 5 4 36 36 H 1.08992 * 109.47308 * 59.99869 * 6 5 4 37 37 H 0.96998 * 120.00215 * 359.97438 * 9 7 6 38 38 H 0.96996 * 119.99559 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.46872 * 305.00054 * 18 2 1 40 40 H 1.09002 * 109.47183 * 185.00147 * 18 2 1 41 41 H 0.96999 * 120.00333 * 0.02562 * 19 18 2 42 42 H 1.08002 * 126.02141 * 359.77294 * 23 22 20 43 43 H 0.96704 * 113.99669 * 269.97388 * 26 25 24 44 44 H 1.08994 * 109.46988 * 274.27565 * 28 27 25 45 45 H 1.09000 * 109.47108 * 34.27732 * 28 27 25 46 46 H 1.09004 * 109.46870 * 154.27513 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4456 6 6 2.1257 -0.6264 3.6672 7 6 1.7085 0.1787 4.8708 8 8 1.0785 1.2049 4.7254 9 7 2.0365 -0.2410 6.1089 10 6 1.6574 0.4918 7.2039 11 1 1.0964 1.4055 7.0744 12 6 1.9951 0.0588 8.4804 13 7 2.6773 -1.0532 8.6379 14 14 1.4792 1.0576 9.9723 15 1 -0.0015 1.1634 10.0093 16 1 1.9581 0.3860 11.2071 17 1 2.0706 2.4170 9.8865 18 6 2.0400 -0.7212 -1.2492 19 7 1.6524 0.0354 -2.4423 20 6 1.9956 -0.4136 -3.6660 21 8 2.5452 -1.4932 -3.7861 22 6 1.7076 0.3969 -4.8503 23 6 1.0081 1.5709 -4.8895 24 7 0.9713 1.9852 -6.1552 25 6 1.6142 1.1311 -6.9215 26 8 1.7727 1.2422 -8.2596 27 7 2.0901 0.1261 -6.1569 28 6 2.8627 -1.0301 -6.6179 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6053 -1.7197 1.2952 33 1 3.1263 -0.7994 1.2056 34 1 0.6527 0.1794 2.4753 35 1 1.6920 -1.6245 3.7301 36 1 3.2125 -0.7036 3.6402 37 1 2.5407 -1.0614 6.2252 38 1 2.9126 -1.3556 9.5290 39 1 1.6054 -1.7198 -1.2951 40 1 3.1264 -0.7994 -1.2055 41 1 1.1488 0.8594 -2.3517 42 1 0.5603 2.0720 -4.0440 43 1 1.0698 0.8233 -8.7751 44 1 2.1813 -1.8133 -6.9501 45 1 3.5044 -0.7312 -7.4467 46 1 3.4772 -1.4060 -5.7998 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753625585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:00 Heat of formation + Delta-G solvation = -81.282751 kcal Electronic energy + Delta-G solvation = -27919.643676 eV Core-core repulsion = 23651.501957 eV Total energy + Delta-G solvation = -4268.141719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.34045 -40.59977 -40.13299 -38.44902 -38.20476 -36.23774 -35.74934 -35.07908 -33.51644 -33.15389 -30.62867 -28.73837 -28.12242 -27.61717 -26.50748 -24.83010 -23.68542 -22.62046 -21.60309 -21.20414 -20.80901 -19.89366 -19.67376 -18.58216 -17.92968 -17.57343 -17.25988 -17.07001 -16.68994 -16.43240 -16.21855 -15.98760 -15.64353 -15.48907 -15.30278 -15.08775 -14.81774 -14.49673 -14.31775 -13.91399 -13.76942 -13.70711 -13.53233 -13.42261 -13.29853 -13.20606 -13.05563 -12.77088 -12.41889 -12.12226 -12.04313 -11.80898 -11.71129 -11.48414 -11.47101 -11.04582 -10.92167 -10.32529 -10.21754 -10.00132 -9.57315 -9.28610 -8.45174 -5.94012 0.06787 1.09822 1.41251 1.43183 1.50080 1.54033 2.07200 2.16508 2.20392 2.31214 2.79542 2.97979 3.22325 3.54428 3.56935 3.77709 3.91014 3.94445 3.97450 4.03294 4.25578 4.30658 4.35632 4.50335 4.57030 4.60052 4.60945 4.62279 4.76559 4.84524 4.93915 4.99780 5.06105 5.23488 5.30851 5.38594 5.42132 5.46595 5.52169 5.91123 6.12778 6.37802 6.46467 6.54252 6.61693 6.67922 7.06485 7.13956 7.58023 8.13167 8.71906 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038539 B = 0.001428 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.367863 B =19600.617854 C =20099.876976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.682 5.682 6 C 0.064 3.936 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.336 4.336 11 H 0.080 0.920 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.993 3.007 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.136 3.864 19 N -0.699 5.699 20 C 0.597 3.403 21 O -0.577 6.577 22 C -0.098 4.098 23 C 0.063 3.937 24 N -0.519 5.519 25 C 0.399 3.601 26 O -0.443 6.443 27 N -0.432 5.432 28 C 0.064 3.936 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.416 0.584 42 H 0.214 0.786 43 H 0.428 0.572 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 -3.088 -31.570 31.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.315 5.315 6 C -0.068 4.068 7 C 0.224 3.776 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.466 4.466 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.816 3.184 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.198 1.198 18 C 0.012 3.988 19 N -0.351 5.351 20 C 0.384 3.616 21 O -0.459 6.459 22 C -0.214 4.214 23 C -0.092 4.092 24 N -0.248 5.248 25 C 0.100 3.900 26 O -0.247 6.247 27 N -0.125 5.125 28 C -0.077 4.077 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.231 0.769 43 H 0.290 0.710 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.943 -1.998 -31.944 32.021 hybrid contribution -0.634 -1.403 1.063 1.871 sum -1.577 -3.401 -30.882 31.108 Atomic orbital electron populations 1.21904 0.94110 1.02341 1.02610 1.21222 0.96832 1.00828 0.92010 0.89318 1.21970 1.01310 0.94746 0.88346 1.60081 1.20872 1.50096 1.00457 1.21533 1.02226 0.95088 0.88004 1.20911 0.83928 0.87665 0.85046 1.90485 1.45812 1.28154 1.86482 1.41937 1.50024 1.24358 1.04758 1.19653 1.34502 1.07069 0.85332 0.90249 1.26031 0.96410 0.97555 1.01191 1.69667 1.38891 1.22467 1.25078 0.84992 0.78642 0.78018 0.76706 1.19650 1.19551 1.19762 1.21308 1.00122 0.95133 0.82215 1.45486 1.57015 1.28339 1.04226 1.16683 0.78172 0.84208 0.82528 1.90805 1.45285 1.22950 1.86838 1.20574 1.12813 1.02515 0.85530 1.23074 0.98736 0.92309 0.95116 1.70341 1.22213 1.28423 1.03843 1.20373 0.97407 0.86399 0.85859 1.84773 1.52629 1.78829 1.08502 1.45815 1.40425 1.19645 1.06582 1.22419 0.96836 0.85762 1.02707 0.92891 0.90704 0.92390 0.93988 0.90158 0.83461 0.91623 0.87833 0.76982 0.91323 0.91156 0.91293 0.74577 0.76931 0.70994 0.88559 0.87475 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.84 71.98 0.64 -1.58 16 2 C -0.09 -1.39 2.63 -10.80 -0.03 -1.41 16 3 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 4 C 0.07 1.31 5.14 86.30 0.44 1.75 16 5 N -0.68 -19.80 6.12 -517.93 -3.17 -22.98 16 6 C 0.06 2.11 6.17 85.56 0.53 2.64 16 7 C 0.44 20.48 7.82 87.66 0.69 21.16 16 8 O -0.62 -34.01 15.78 -3.07 -0.05 -34.06 16 9 N -0.57 -29.21 5.29 -306.98 -1.62 -30.83 16 10 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 11 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 12 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 13 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 14 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 18 C 0.14 1.99 5.07 86.38 0.44 2.42 16 19 N -0.70 -9.24 5.27 -467.35 -2.46 -11.71 16 20 C 0.60 10.84 7.76 86.36 0.67 11.51 16 21 O -0.58 -14.00 14.89 -4.46 -0.07 -14.06 16 22 C -0.10 -1.64 6.92 39.80 0.28 -1.37 16 23 C 0.06 0.93 11.35 84.12 0.96 1.88 16 24 N -0.52 -9.77 11.22 -313.66 -3.52 -13.29 16 25 C 0.40 6.39 9.01 179.99 1.62 8.01 16 26 O -0.44 -4.63 13.53 -84.83 -1.15 -5.78 16 27 N -0.43 -6.71 3.20 -652.01 -2.09 -8.80 16 28 C 0.06 0.69 10.70 127.77 1.37 2.05 16 29 H 0.05 0.97 6.68 -2.38 -0.02 0.95 16 30 H 0.07 0.79 7.18 -2.38 -0.02 0.77 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.35 10.51 6.68 -89.69 -0.60 9.91 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 38 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.42 3.45 6.58 -92.71 -0.61 2.84 16 42 H 0.21 1.57 7.45 -2.91 -0.02 1.54 16 43 H 0.43 -0.19 9.06 -74.05 -0.67 -0.86 16 44 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.09 1.35 6.40 -2.39 -0.02 1.33 16 Total: -1.00 -78.79 390.64 -4.49 -83.28 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -1.55 Total: 33.97 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 8.87 Total: 28.69 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -12.58 Total: -136.75 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -1.26 Total: -53.89 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -78.79 -4.49 -83.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753625585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.996 kcal (2) G-P(sol) polarization free energy of solvation -78.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds