Wall clock time and date at job start Sat Apr 11 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48224 * 111.00337 * 2 1 4 4 C 1.52553 * 85.73012 * 223.31566 * 3 2 1 5 5 C 1.48223 * 110.99750 * 260.33658 * 2 1 3 6 6 C 1.53869 * 115.92617 * 265.14071 * 4 3 2 7 7 C 1.55407 * 101.30521 * 196.15644 * 6 4 3 8 8 N 1.47546 * 104.88217 * 35.97951 * 7 6 4 9 9 C 1.34775 * 125.65635 * 155.97936 * 8 7 6 10 10 O 1.21667 * 119.99689 * 185.08777 * 9 8 7 11 11 C 1.46888 * 120.00104 * 5.09659 * 9 8 7 12 12 C 1.36116 * 125.43696 * 7.16110 * 11 9 8 13 13 C 1.41703 * 107.74854 * 180.02562 * 12 11 9 14 14 C 1.40026 * 133.34660 * 180.28624 * 13 12 11 15 15 C 1.36572 * 119.82691 * 180.09975 * 14 13 12 16 16 C 1.38858 * 120.60073 * 359.57860 * 15 14 13 17 17 C 1.37838 * 120.63260 * 0.21623 * 16 15 14 18 18 C 1.39083 * 119.81846 * 359.97438 * 17 16 15 19 19 N 1.37841 * 133.16859 * 180.02562 * 18 17 16 20 20 C 1.36884 * 125.61943 * 359.95840 * 19 18 17 21 21 H 1.08007 * 119.99985 * 143.73395 * 20 19 18 22 22 C 1.39014 * 120.00450 * 323.74011 * 20 19 18 23 23 N 1.31352 * 119.99580 * 340.73445 * 22 20 19 24 24 Si 1.86797 * 120.00070 * 160.73516 * 22 20 19 25 25 H 1.48497 * 109.47179 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47130 * 120.00246 * 24 22 20 27 27 H 1.48505 * 109.46765 * 239.99691 * 24 22 20 28 28 C 1.47359 * 108.68160 * 335.72293 * 8 7 6 29 29 H 1.08997 * 109.47398 * 59.99887 * 1 2 3 30 30 H 1.09000 * 109.47525 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46470 * 300.00184 * 1 2 3 32 32 H 1.09002 * 113.83216 * 109.11108 * 3 2 1 33 33 H 1.08997 * 113.82909 * 337.51261 * 3 2 1 34 34 H 1.08998 * 113.83056 * 22.49115 * 5 2 1 35 35 H 1.09003 * 113.83365 * 250.88492 * 5 2 1 36 36 H 1.08996 * 111.03640 * 314.38573 * 6 4 3 37 37 H 1.09001 * 111.03714 * 78.27773 * 6 4 3 38 38 H 1.08999 * 110.48426 * 277.09416 * 7 6 4 39 39 H 1.08997 * 110.30417 * 154.77651 * 7 6 4 40 40 H 1.08007 * 126.12830 * 359.95796 * 12 11 9 41 41 H 1.08000 * 120.07982 * 359.97111 * 14 13 12 42 42 H 1.08000 * 119.70066 * 179.79144 * 15 14 13 43 43 H 1.07998 * 119.68031 * 180.22875 * 16 15 14 44 44 H 1.08005 * 120.09355 * 180.02562 * 17 16 15 45 45 H 0.96993 * 119.99899 * 175.67655 * 23 22 20 46 46 H 1.09000 * 109.98491 * 121.63405 * 28 8 7 47 47 H 1.09002 * 109.98281 * 242.89638 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0003 1.3838 0.0000 4 6 2.9929 0.8810 -1.0436 5 6 2.0001 -0.2323 -1.3642 6 6 4.3615 0.4271 -0.5066 7 6 5.2079 0.4047 -1.8098 8 7 4.7089 1.5427 -2.6053 9 6 5.3986 2.1950 -3.5620 10 8 4.9206 3.1806 -4.0916 11 6 6.7273 1.7160 -3.9654 12 6 7.3074 0.5564 -3.5512 13 6 8.5808 0.4667 -4.1664 14 6 9.6052 -0.4869 -4.1208 15 6 10.7489 -0.2901 -4.8408 16 6 10.9032 0.8445 -5.6264 17 6 9.9071 1.7950 -5.6907 18 6 8.7349 1.6187 -4.9633 19 7 7.5881 2.3710 -4.8258 20 6 7.3427 3.5697 -5.4395 21 1 6.3449 3.8098 -5.7761 22 6 8.3777 4.4781 -5.6297 23 7 9.4755 4.3817 -4.9150 24 14 8.2071 5.8355 -6.9014 25 1 6.8847 5.7260 -7.5681 26 1 8.3170 7.1569 -6.2328 27 1 9.2844 5.7025 -7.9149 28 6 3.3290 1.8437 -2.1847 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 2.4629 1.6779 0.9421 33 1 1.2981 2.1251 -0.3814 34 1 1.2979 0.0193 -2.1589 35 1 2.4628 -1.2104 -1.4961 36 1 4.7585 1.1459 0.2102 37 1 4.2985 -0.5677 -0.0657 38 1 5.0542 -0.5303 -2.3484 39 1 6.2642 0.5396 -1.5771 40 1 6.8752 -0.1655 -2.8740 41 1 9.4920 -1.3745 -3.5162 42 1 11.5392 -1.0252 -4.8015 43 1 11.8124 0.9833 -6.1926 44 1 10.0361 2.6740 -6.3049 45 1 10.2221 4.9756 -5.0904 46 1 3.2626 2.8738 -1.8347 47 1 2.6434 1.6885 -3.0177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597570708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:46 Heat of formation + Delta-G solvation = 84.392945 kcal Electronic energy + Delta-G solvation = -29639.126824 eV Core-core repulsion = 25789.018605 eV Total energy + Delta-G solvation = -3850.108219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.09568 -40.33756 -38.43106 -36.24804 -35.65462 -33.68595 -31.68745 -30.60706 -29.49972 -28.95709 -28.45545 -26.64962 -26.47712 -24.85826 -23.80610 -22.40556 -21.87772 -20.79302 -19.78673 -19.17395 -18.69629 -17.67535 -16.36896 -16.20657 -15.65765 -15.58023 -15.39263 -15.11406 -14.80188 -14.71080 -14.47825 -13.87234 -13.48157 -13.25667 -13.16812 -13.02316 -12.86758 -12.72958 -12.60692 -12.43476 -12.14039 -11.86597 -11.76082 -11.51418 -11.38203 -11.24970 -11.16792 -11.15333 -10.74237 -10.59839 -10.55711 -10.38157 -10.23056 -9.73289 -9.20030 -9.07563 -9.04309 -8.59171 -8.28571 -7.16673 -6.82196 -6.52083 -4.36738 1.85729 2.79220 3.04356 3.07739 3.14032 3.17190 3.24693 3.61572 3.88666 4.10962 4.25479 4.29733 4.64946 4.75092 4.80088 4.81187 4.91239 5.08831 5.13172 5.18588 5.24420 5.33323 5.45186 5.48715 5.51323 5.57279 5.71990 5.76519 5.86725 5.87646 5.91907 5.99310 6.01275 6.03665 6.11453 6.15613 6.35961 6.55703 6.61086 6.73351 6.77184 6.92472 7.06498 7.13274 7.20690 7.51729 7.61459 7.70932 7.87875 8.01364 8.14818 8.45245 8.76657 8.98089 9.35584 10.23150 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.003421 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.456936 B = 8182.660860 C = 9853.476895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.483 5.483 3 C 0.017 3.983 4 C -0.101 4.101 5 C 0.017 3.983 6 C -0.105 4.105 7 C 0.095 3.905 8 N -0.618 5.618 9 C 0.604 3.396 10 O -0.535 6.535 11 C -0.023 4.023 12 C -0.220 4.220 13 C -0.124 4.124 14 C -0.093 4.093 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.047 4.047 18 C 0.081 3.919 19 N -0.228 5.228 20 C -0.333 4.333 21 H 0.121 0.879 22 C 0.049 3.951 23 N -0.819 5.819 24 Si 0.928 3.072 25 H -0.260 1.260 26 H -0.274 1.274 27 H -0.272 1.272 28 C 0.129 3.871 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.280 0.720 46 H 0.069 0.931 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 -8.127 7.526 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.205 5.205 3 C -0.112 4.112 4 C -0.102 4.102 5 C -0.112 4.112 6 C -0.142 4.142 7 C -0.028 4.028 8 N -0.354 5.354 9 C 0.396 3.604 10 O -0.412 6.412 11 C -0.140 4.140 12 C -0.247 4.247 13 C -0.129 4.129 14 C -0.112 4.112 15 C -0.175 4.175 16 C -0.177 4.177 17 C -0.067 4.067 18 C -0.034 4.034 19 N 0.112 4.888 20 C -0.462 4.462 21 H 0.139 0.861 22 C -0.163 4.163 23 N -0.448 5.448 24 Si 0.752 3.248 25 H -0.184 1.184 26 H -0.200 1.200 27 H -0.197 1.197 28 C 0.005 3.995 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.156 0.844 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.131 0.869 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.822 -7.483 7.624 14.512 hybrid contribution -0.293 1.304 -1.048 1.699 sum -10.115 -6.179 6.575 13.555 Atomic orbital electron populations 1.22864 0.89745 1.02376 1.01053 1.68531 1.08893 1.18412 1.24631 1.23815 0.96334 0.91449 0.99559 1.22422 0.95834 0.96197 0.95722 1.23928 0.96374 0.99918 0.90951 1.22533 0.92096 1.02675 0.96940 1.22851 0.99923 0.89482 0.90539 1.48078 1.14340 1.34605 1.38366 1.16902 0.83677 0.81806 0.78010 1.90761 1.70205 1.25389 1.54822 1.19446 0.94578 0.98294 1.01685 1.20854 0.95790 0.99696 1.08341 1.17973 0.95708 0.96251 1.02923 1.20008 0.93296 0.97634 1.00250 1.20262 0.97727 0.98501 1.00971 1.20535 0.98465 0.95814 1.02846 1.20152 0.90900 0.97402 0.98214 1.18122 0.90883 0.91448 1.02903 1.39970 1.09777 1.13293 1.25741 1.20205 0.98811 0.91630 1.35523 0.86112 1.25665 0.95414 0.98469 0.96757 1.70057 1.05067 1.37295 1.32373 0.85845 0.79525 0.79587 0.79872 1.18355 1.19981 1.19706 1.21611 0.83649 0.98611 0.95593 0.94689 0.91177 0.91406 0.88781 0.90859 0.90833 0.88780 0.90101 0.89264 0.91221 0.88639 0.84380 0.87923 0.88047 0.87790 0.86857 0.90903 0.91233 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.64 60.06 0.58 0.49 16 2 N -0.48 -4.50 6.55 -253.96 -1.66 -6.16 16 3 C 0.02 0.16 7.31 -3.32 -0.02 0.13 16 4 C -0.10 -1.05 0.97 -154.66 -0.15 -1.20 16 5 C 0.02 0.16 7.21 -3.31 -0.02 0.13 16 6 C -0.10 -1.09 6.43 -25.00 -0.16 -1.25 16 7 C 0.09 1.26 5.10 -2.19 -0.01 1.25 16 8 N -0.62 -10.55 3.34 -172.10 -0.57 -11.12 16 9 C 0.60 13.65 7.80 -12.76 -0.10 13.55 16 10 O -0.53 -13.76 15.23 5.22 0.08 -13.68 16 11 C -0.02 -0.55 6.72 -82.25 -0.55 -1.10 16 12 C -0.22 -4.72 9.11 -39.02 -0.36 -5.08 16 13 C -0.12 -2.87 6.16 -106.89 -0.66 -3.53 16 14 C -0.09 -1.87 10.06 -39.51 -0.40 -2.27 16 15 C -0.16 -3.01 9.97 -39.95 -0.40 -3.41 16 16 C -0.16 -3.25 10.02 -39.50 -0.40 -3.64 16 17 C -0.05 -1.14 8.51 -39.41 -0.34 -1.48 16 18 C 0.08 2.10 6.10 -83.83 -0.51 1.59 16 19 N -0.23 -6.16 2.85 -56.08 -0.16 -6.32 16 20 C -0.33 -9.21 8.95 -15.01 -0.13 -9.34 16 21 H 0.12 3.43 6.70 -52.48 -0.35 3.08 16 22 C 0.05 1.28 4.39 -17.47 -0.08 1.20 16 23 N -0.82 -21.83 10.75 55.50 0.60 -21.23 16 24 Si 0.93 19.93 29.60 -169.99 -5.03 14.90 16 25 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 27 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 28 C 0.13 1.78 6.38 -3.56 -0.02 1.75 16 29 H 0.03 0.26 7.63 -51.93 -0.40 -0.14 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 33 H 0.07 0.62 7.92 -51.93 -0.41 0.21 16 34 H 0.07 0.66 7.49 -51.93 -0.39 0.27 16 35 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.81 8.06 -51.93 -0.42 0.39 16 38 H 0.07 0.85 7.70 -51.93 -0.40 0.45 16 39 H 0.10 1.38 5.88 -51.93 -0.31 1.07 16 40 H 0.14 2.40 4.57 -52.48 -0.24 2.16 16 41 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 44 H 0.11 2.82 6.28 -52.48 -0.33 2.49 16 45 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.07 1.01 8.09 -51.93 -0.42 0.58 16 47 H 0.06 0.89 7.86 -51.93 -0.41 0.48 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -31.67 371.81 -11.46 -43.13 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.58 Total: 7.09 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -3.73 Total: -12.20 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -1.80 Total: -44.84 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.67 -11.46 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597570708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.522 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds