Wall clock time and date at job start Sat Apr 11 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46965 * 105.90700 * 3 2 1 5 5 C 1.46905 * 110.99913 * 293.94894 * 4 3 2 6 6 C 1.46904 * 111.00177 * 170.00087 * 4 3 2 7 7 C 1.52997 * 109.47125 * 190.00000 * 6 4 3 8 8 C 1.53005 * 109.46955 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.46967 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99616 * 179.97438 * 9 8 7 11 11 O 1.21660 * 120.00173 * 4.70131 * 10 9 8 12 12 C 1.46896 * 119.99628 * 184.70686 * 10 9 8 13 13 C 1.36125 * 125.43574 * 173.63035 * 12 10 9 14 14 C 1.41702 * 107.74678 * 180.23797 * 13 12 10 15 15 C 1.40013 * 133.34656 * 179.81792 * 14 13 12 16 16 C 1.36581 * 119.82907 * 179.97438 * 15 14 13 17 17 C 1.38855 * 120.60037 * 0.02562 * 16 15 14 18 18 C 1.37847 * 120.63211 * 359.97438 * 17 16 15 19 19 C 1.39086 * 119.81378 * 0.02562 * 18 17 16 20 20 N 1.37839 * 133.16192 * 180.02562 * 19 18 17 21 21 C 1.36887 * 125.61879 * 359.93788 * 20 19 18 22 22 H 1.08004 * 119.99791 * 137.97817 * 21 20 19 23 23 C 1.39009 * 120.00332 * 317.97444 * 21 20 19 24 24 N 1.31354 * 119.99800 * 341.87208 * 23 21 20 25 25 Si 1.86804 * 119.99839 * 161.59880 * 23 21 20 26 26 H 1.48501 * 109.46959 * 180.27595 * 25 23 21 27 27 H 1.48496 * 109.47051 * 300.27316 * 25 23 21 28 28 H 1.48493 * 109.47235 * 60.27583 * 25 23 21 29 29 H 4.40883 * 5.52098 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.47360 * 345.90394 * 3 2 1 31 31 H 1.09000 * 109.47185 * 225.90144 * 3 2 1 32 32 H 1.08994 * 109.47137 * 296.05051 * 5 4 3 33 33 H 1.09000 * 109.46899 * 56.05023 * 5 4 3 34 34 H 1.08997 * 109.47055 * 176.04832 * 5 4 3 35 35 H 1.09004 * 109.47402 * 69.99440 * 6 4 3 36 36 H 1.09003 * 109.46772 * 309.99821 * 6 4 3 37 37 H 1.08991 * 109.47323 * 59.99649 * 7 6 4 38 38 H 1.09003 * 109.47149 * 299.99590 * 7 6 4 39 39 H 1.08999 * 109.47256 * 59.99922 * 8 7 6 40 40 H 1.08997 * 109.46672 * 299.99410 * 8 7 6 41 41 H 0.97001 * 120.00162 * 0.02562 * 9 8 7 42 42 H 1.07993 * 126.12192 * 0.02562 * 13 12 10 43 43 H 1.08002 * 120.09096 * 359.94374 * 15 14 13 44 44 H 1.08004 * 119.70199 * 180.02562 * 16 15 14 45 45 H 1.07996 * 119.68642 * 180.02562 * 17 16 15 46 46 H 1.07997 * 120.09192 * 180.02562 * 18 17 16 47 47 H 0.97000 * 119.99793 * 353.60588 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1355 0.3805 -1.3320 5 6 2.7865 -0.6382 -2.3313 6 6 4.5843 0.6228 -1.3112 7 6 5.0153 1.2516 -2.6377 8 6 6.5241 1.5045 -2.6157 9 7 6.9369 2.1061 -3.8862 10 6 8.2313 2.4184 -4.0947 11 8 9.0697 2.1234 -3.2639 12 6 8.6296 3.1153 -5.3250 13 6 9.8763 3.5911 -5.5941 14 6 9.8401 4.1970 -6.8746 15 6 10.8022 4.8452 -7.6586 16 6 10.4591 5.3382 -8.8853 17 6 9.1626 5.2034 -9.3639 18 6 8.1982 4.5692 -8.6103 19 6 8.5237 4.0590 -7.3581 20 7 7.7989 3.3909 -6.3946 21 6 6.4736 3.0595 -6.4809 22 1 6.1372 2.0881 -6.1494 23 6 5.5606 3.9730 -6.9951 24 7 5.8745 5.2465 -7.0652 25 14 3.8904 3.3882 -7.5935 26 1 3.1114 4.5478 -8.0973 27 1 4.0743 2.4022 -8.6885 28 1 3.1579 2.7501 -6.4705 29 1 -1.0500 0.0001 0.0002 30 1 3.0099 -0.9959 0.2503 31 1 3.0091 0.7160 0.7380 32 1 3.2937 -1.5724 -2.0902 33 1 1.7084 -0.7982 -2.3258 34 1 3.0986 -0.2998 -3.3193 35 1 5.1088 -0.3222 -1.1695 36 1 4.8276 1.2997 -0.4922 37 1 4.4908 2.1965 -2.7793 38 1 4.7719 0.5747 -3.4567 39 1 7.0489 0.5598 -2.4740 40 1 6.7670 2.1816 -1.7968 41 1 6.2786 2.2802 -4.5769 42 1 10.7375 3.5225 -4.9463 43 1 11.8129 4.9555 -7.2942 44 1 11.2030 5.8374 -9.4885 45 1 8.9076 5.5984 -10.3361 46 1 7.1926 4.4688 -8.9913 47 1 6.7037 5.5639 -6.6744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818588685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:54 Heat of formation + Delta-G solvation = 78.909251 kcal Electronic energy + Delta-G solvation = -28511.736931 eV Core-core repulsion = 24661.390921 eV Total energy + Delta-G solvation = -3850.346010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.71120 -38.78823 -38.15661 -36.11564 -35.13379 -33.85031 -33.24653 -31.22333 -30.62338 -29.11495 -28.20280 -27.99590 -26.34622 -24.86477 -23.67539 -22.15797 -21.11938 -21.04284 -20.17670 -19.38054 -18.52723 -18.28344 -16.52483 -16.24010 -16.08128 -15.73712 -15.23864 -15.19984 -15.00954 -14.75950 -14.48009 -14.12661 -13.90239 -13.60457 -13.21482 -13.16745 -13.11907 -12.89081 -12.53218 -12.25887 -12.18060 -11.97988 -11.84448 -11.72892 -11.44734 -11.19217 -10.91593 -10.84997 -10.61885 -10.59356 -10.47591 -10.41076 -10.38312 -9.93644 -9.48360 -9.23709 -8.86118 -8.65334 -8.55788 -7.59077 -7.08218 -6.79878 -4.75655 1.68250 2.45191 2.58064 2.62122 2.97019 3.03875 3.06543 3.23340 3.62174 3.78091 3.94723 4.16970 4.17921 4.32469 4.64184 4.81000 4.85647 4.91715 4.98917 5.11524 5.19352 5.31905 5.38077 5.44559 5.58786 5.59521 5.69281 5.71816 5.75725 5.80776 5.84061 6.01303 6.14263 6.24450 6.26856 6.37811 6.51512 6.70653 6.73313 6.75034 6.84400 6.93803 6.98917 7.16345 7.35361 7.39367 7.44316 7.52208 7.74148 7.77443 8.09628 8.20710 8.59897 8.88093 9.04857 10.02771 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.002851 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.949709 B = 9820.337392 C =11481.170817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.161 3.839 4 N -0.540 5.540 5 C 0.019 3.981 6 C 0.061 3.939 7 C -0.130 4.130 8 C 0.121 3.879 9 N -0.729 5.729 10 C 0.595 3.405 11 O -0.559 6.559 12 C -0.021 4.021 13 C -0.165 4.165 14 C -0.129 4.129 15 C -0.081 4.081 16 C -0.160 4.160 17 C -0.135 4.135 18 C -0.081 4.081 19 C 0.069 3.931 20 N -0.265 5.265 21 C -0.450 4.450 22 H 0.102 0.898 23 C 0.030 3.970 24 N -0.819 5.819 25 Si 1.072 2.928 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.273 1.273 29 H 0.217 0.783 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.417 0.583 42 H 0.134 0.866 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.119 0.881 47 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 -7.481 6.695 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.179 4.179 3 C 0.034 3.966 4 N -0.263 5.263 5 C -0.129 4.129 6 C -0.067 4.067 7 C -0.168 4.168 8 C -0.004 4.004 9 N -0.389 5.389 10 C 0.384 3.616 11 O -0.438 6.438 12 C -0.136 4.136 13 C -0.193 4.193 14 C -0.134 4.134 15 C -0.100 4.100 16 C -0.179 4.179 17 C -0.155 4.155 18 C -0.100 4.100 19 C -0.045 4.045 20 N 0.070 4.930 21 C -0.577 4.577 22 H 0.119 0.881 23 C -0.187 4.187 24 N -0.445 5.445 25 Si 0.895 3.105 26 H -0.194 1.194 27 H -0.200 1.200 28 H -0.199 1.199 29 H 0.234 0.766 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.263 0.737 42 H 0.152 0.848 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.137 0.863 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.011 -6.815 6.464 12.346 hybrid contribution 1.258 -1.097 0.673 1.800 sum -6.754 -7.912 7.137 12.616 Atomic orbital electron populations 1.24894 0.95895 1.01370 0.99639 1.22840 0.94195 1.00052 1.00786 1.19024 0.85242 1.00470 0.91848 1.61910 1.14397 1.44961 1.05067 1.22495 1.01451 0.92503 0.96442 1.22035 0.86077 0.99879 0.98710 1.21783 0.94950 1.02698 0.97369 1.21156 0.93738 0.98286 0.87184 1.46718 1.10050 1.63286 1.18847 1.17224 0.82048 0.77471 0.84837 1.90713 1.51386 1.55422 1.46322 1.20200 0.92880 1.10456 0.90036 1.20413 0.95981 1.05966 0.96899 1.18014 0.93555 1.05654 0.96191 1.20122 0.97382 0.98437 0.94033 1.20334 0.96353 1.04446 0.96743 1.20611 0.93307 1.02130 0.99486 1.20203 0.99247 0.98535 0.92049 1.18432 0.90502 1.03553 0.92034 1.40130 1.07103 1.37218 1.08504 1.20444 0.81388 1.03435 1.52476 0.88075 1.26834 1.04763 0.92827 0.94249 1.70599 1.26200 1.13890 1.33782 0.83451 0.72883 0.76580 0.77598 1.19434 1.20027 1.19862 0.76627 0.92431 0.88359 0.95371 0.91348 0.90456 0.94120 0.90073 0.89959 0.91066 0.92029 0.91909 0.73655 0.84808 0.87448 0.87553 0.87223 0.86349 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 19.25 29.55 0.57 -1.25 16 2 C -0.18 -1.83 12.38 -37.12 -0.46 -2.29 16 3 C 0.16 1.47 5.46 -6.61 -0.04 1.44 16 4 N -0.54 -5.76 4.74 -246.44 -1.17 -6.92 16 5 C 0.02 0.19 9.14 60.07 0.55 0.74 16 6 C 0.06 0.62 4.96 -3.82 -0.02 0.60 16 7 C -0.13 -1.62 5.25 -26.73 -0.14 -1.76 16 8 C 0.12 1.83 5.68 -4.04 -0.02 1.81 16 9 N -0.73 -14.01 5.49 -61.55 -0.34 -14.35 16 10 C 0.60 13.41 7.76 -12.76 -0.10 13.31 16 11 O -0.56 -13.33 16.85 5.22 0.09 -13.24 16 12 C -0.02 -0.50 6.77 -82.24 -0.56 -1.06 16 13 C -0.17 -3.82 10.55 -39.02 -0.41 -4.23 16 14 C -0.13 -2.98 6.16 -106.90 -0.66 -3.63 16 15 C -0.08 -1.61 10.06 -39.52 -0.40 -2.01 16 16 C -0.16 -2.97 9.97 -39.95 -0.40 -3.36 16 17 C -0.13 -2.66 10.02 -39.50 -0.40 -3.06 16 18 C -0.08 -1.83 8.56 -39.41 -0.34 -2.17 16 19 C 0.07 1.68 5.42 -83.83 -0.45 1.23 16 20 N -0.27 -6.51 2.57 -56.08 -0.14 -6.65 16 21 C -0.45 -10.60 7.79 -15.01 -0.12 -10.72 16 22 H 0.10 2.24 6.27 -52.48 -0.33 1.91 16 23 C 0.03 0.70 4.40 -17.47 -0.08 0.62 16 24 N -0.82 -20.73 12.00 55.50 0.67 -20.07 16 25 Si 1.07 20.04 29.96 -169.99 -5.09 14.95 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 27 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 28 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 29 H 0.22 1.23 7.80 -54.09 -0.42 0.80 16 30 H 0.06 0.46 8.12 -51.93 -0.42 0.03 16 31 H 0.10 0.78 7.93 -51.93 -0.41 0.37 16 32 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.69 7.17 -51.93 -0.37 0.31 16 34 H 0.08 0.80 6.47 -51.93 -0.34 0.47 16 35 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 36 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.42 8.18 4.25 -40.82 -0.17 8.01 16 42 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 43 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 45 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 46 H 0.12 2.77 6.77 -52.49 -0.36 2.42 16 47 H 0.29 7.86 6.92 -40.82 -0.28 7.58 16 LS Contribution 391.62 15.07 5.90 5.90 Total: -1.00 -29.07 391.62 -10.01 -39.08 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -6.46 Total: 17.11 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -3.46 Total: -15.80 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.98 Total: -48.00 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.09 Total: 14.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.07 -10.01 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818588685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.987 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds