Wall clock time and date at job start Sat Apr 11 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46965 * 105.90700 * 3 2 1 5 5 C 1.46905 * 110.99913 * 293.94894 * 4 3 2 6 6 C 1.46904 * 111.00177 * 170.00087 * 4 3 2 7 7 C 1.52997 * 109.47125 * 190.00000 * 6 4 3 8 8 C 1.53005 * 109.46955 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.46967 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99616 * 179.97438 * 9 8 7 11 11 O 1.21660 * 120.00173 * 4.70131 * 10 9 8 12 12 C 1.46896 * 119.99628 * 184.70686 * 10 9 8 13 13 C 1.36125 * 125.43574 * 173.63035 * 12 10 9 14 14 C 1.41702 * 107.74678 * 180.23797 * 13 12 10 15 15 C 1.40013 * 133.34656 * 179.81792 * 14 13 12 16 16 C 1.36581 * 119.82907 * 179.97438 * 15 14 13 17 17 C 1.38855 * 120.60037 * 0.02562 * 16 15 14 18 18 C 1.37847 * 120.63211 * 359.97438 * 17 16 15 19 19 C 1.39086 * 119.81378 * 0.02562 * 18 17 16 20 20 N 1.37839 * 133.16192 * 180.02562 * 19 18 17 21 21 C 1.36887 * 125.61879 * 359.93788 * 20 19 18 22 22 H 1.08004 * 119.99791 * 137.97817 * 21 20 19 23 23 C 1.39009 * 120.00332 * 317.97444 * 21 20 19 24 24 N 1.31354 * 119.99800 * 341.87208 * 23 21 20 25 25 Si 1.86804 * 119.99839 * 161.59880 * 23 21 20 26 26 H 1.48501 * 109.46959 * 180.27595 * 25 23 21 27 27 H 1.48496 * 109.47051 * 300.27316 * 25 23 21 28 28 H 1.48493 * 109.47235 * 60.27583 * 25 23 21 29 29 H 4.40883 * 5.52098 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.47360 * 345.90394 * 3 2 1 31 31 H 1.09000 * 109.47185 * 225.90144 * 3 2 1 32 32 H 1.08994 * 109.47137 * 296.05051 * 5 4 3 33 33 H 1.09000 * 109.46899 * 56.05023 * 5 4 3 34 34 H 1.08997 * 109.47055 * 176.04832 * 5 4 3 35 35 H 1.09004 * 109.47402 * 69.99440 * 6 4 3 36 36 H 1.09003 * 109.46772 * 309.99821 * 6 4 3 37 37 H 1.08991 * 109.47323 * 59.99649 * 7 6 4 38 38 H 1.09003 * 109.47149 * 299.99590 * 7 6 4 39 39 H 1.08999 * 109.47256 * 59.99922 * 8 7 6 40 40 H 1.08997 * 109.46672 * 299.99410 * 8 7 6 41 41 H 0.97001 * 120.00162 * 0.02562 * 9 8 7 42 42 H 1.07993 * 126.12192 * 0.02562 * 13 12 10 43 43 H 1.08002 * 120.09096 * 359.94374 * 15 14 13 44 44 H 1.08004 * 119.70199 * 180.02562 * 16 15 14 45 45 H 1.07996 * 119.68642 * 180.02562 * 17 16 15 46 46 H 1.07997 * 120.09192 * 180.02562 * 18 17 16 47 47 H 0.97000 * 119.99793 * 353.60588 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1355 0.3805 -1.3320 5 6 2.7865 -0.6382 -2.3313 6 6 4.5843 0.6228 -1.3112 7 6 5.0153 1.2516 -2.6377 8 6 6.5241 1.5045 -2.6157 9 7 6.9369 2.1061 -3.8862 10 6 8.2313 2.4184 -4.0947 11 8 9.0697 2.1234 -3.2639 12 6 8.6296 3.1153 -5.3250 13 6 9.8763 3.5911 -5.5941 14 6 9.8401 4.1970 -6.8746 15 6 10.8022 4.8452 -7.6586 16 6 10.4591 5.3382 -8.8853 17 6 9.1626 5.2034 -9.3639 18 6 8.1982 4.5692 -8.6103 19 6 8.5237 4.0590 -7.3581 20 7 7.7989 3.3909 -6.3946 21 6 6.4736 3.0595 -6.4809 22 1 6.1372 2.0881 -6.1494 23 6 5.5606 3.9730 -6.9951 24 7 5.8745 5.2465 -7.0652 25 14 3.8904 3.3882 -7.5935 26 1 3.1114 4.5478 -8.0973 27 1 4.0743 2.4022 -8.6885 28 1 3.1579 2.7501 -6.4705 29 1 -1.0500 0.0001 0.0002 30 1 3.0099 -0.9959 0.2503 31 1 3.0091 0.7160 0.7380 32 1 3.2937 -1.5724 -2.0902 33 1 1.7084 -0.7982 -2.3258 34 1 3.0986 -0.2998 -3.3193 35 1 5.1088 -0.3222 -1.1695 36 1 4.8276 1.2997 -0.4922 37 1 4.4908 2.1965 -2.7793 38 1 4.7719 0.5747 -3.4567 39 1 7.0489 0.5598 -2.4740 40 1 6.7670 2.1816 -1.7968 41 1 6.2786 2.2802 -4.5769 42 1 10.7375 3.5225 -4.9463 43 1 11.8129 4.9555 -7.2942 44 1 11.2030 5.8374 -9.4885 45 1 8.9076 5.5984 -10.3361 46 1 7.1926 4.4688 -8.9913 47 1 6.7037 5.5639 -6.6744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818588685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:53 Heat of formation + Delta-G solvation = 63.042349 kcal Electronic energy + Delta-G solvation = -28512.424971 eV Core-core repulsion = 24661.390921 eV Total energy + Delta-G solvation = -3851.034050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.43435 -40.36042 -39.07919 -37.77000 -36.51453 -35.54823 -34.17127 -32.48377 -32.23893 -30.73744 -29.82680 -28.73760 -27.45185 -26.64045 -24.97929 -23.47097 -22.77836 -22.12091 -21.80941 -21.03805 -20.16965 -18.99380 -18.16746 -17.48544 -17.37338 -17.12351 -16.66377 -16.42915 -16.31526 -15.96133 -15.69805 -15.60078 -15.41712 -15.06916 -14.85530 -14.72774 -14.20448 -13.96574 -13.92614 -13.73901 -13.48301 -13.28069 -12.98190 -12.79589 -12.58899 -12.50036 -12.46395 -12.18038 -12.11295 -11.96805 -11.80242 -11.57463 -11.39734 -11.20578 -11.10492 -10.95712 -10.58954 -10.13640 -9.40411 -9.39014 -8.83619 -8.53111 -6.60190 -0.01910 0.94838 1.25747 1.50410 1.55526 1.71953 1.76067 1.91919 2.15898 2.25481 2.41320 2.62469 2.88907 3.08034 3.18430 3.54086 3.87835 3.88681 4.01413 4.07341 4.12061 4.32195 4.34101 4.38546 4.41837 4.45400 4.52885 4.60310 4.61998 4.66670 4.69150 4.73756 4.85640 4.97591 5.06817 5.07489 5.11301 5.14655 5.17839 5.26179 5.39892 5.44545 5.66755 5.74056 5.82520 5.95545 5.98238 6.03247 6.05956 6.41689 6.51086 6.70730 6.83824 7.17263 7.26982 8.14791 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.002851 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.949709 B = 9820.337392 C =11481.170817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.214 4.214 3 C 0.160 3.840 4 N -0.555 5.555 5 C 0.020 3.980 6 C 0.067 3.933 7 C -0.118 4.118 8 C 0.119 3.881 9 N -0.722 5.722 10 C 0.589 3.411 11 O -0.580 6.580 12 C -0.048 4.048 13 C -0.175 4.175 14 C -0.150 4.150 15 C -0.084 4.084 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.112 4.112 19 C 0.044 3.956 20 N -0.281 5.281 21 C -0.461 4.461 22 H 0.109 0.891 23 C 0.001 3.999 24 N -0.843 5.843 25 Si 1.115 2.885 26 H -0.277 1.277 27 H -0.264 1.264 28 H -0.249 1.249 29 H 0.243 0.757 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.416 0.584 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.152 0.848 45 H 0.142 0.858 46 H 0.102 0.898 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 -7.887 6.287 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.215 4.215 3 C 0.034 3.966 4 N -0.279 5.279 5 C -0.128 4.128 6 C -0.061 4.061 7 C -0.157 4.157 8 C -0.004 4.004 9 N -0.380 5.380 10 C 0.378 3.622 11 O -0.462 6.462 12 C -0.162 4.162 13 C -0.202 4.202 14 C -0.155 4.155 15 C -0.103 4.103 16 C -0.170 4.170 17 C -0.141 4.141 18 C -0.132 4.132 19 C -0.070 4.070 20 N 0.054 4.946 21 C -0.588 4.588 22 H 0.126 0.874 23 C -0.210 4.210 24 N -0.469 5.469 25 Si 0.932 3.068 26 H -0.202 1.202 27 H -0.189 1.189 28 H -0.172 1.172 29 H 0.260 0.740 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.261 0.739 42 H 0.162 0.838 43 H 0.156 0.844 44 H 0.169 0.831 45 H 0.160 0.840 46 H 0.120 0.880 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.286 -7.244 6.077 12.573 hybrid contribution 1.419 -0.934 0.751 1.858 sum -6.867 -8.178 6.828 12.675 Atomic orbital electron populations 1.25687 0.96836 1.00326 0.98427 1.23320 0.95083 1.01127 1.01938 1.19096 0.84954 1.01433 0.91153 1.61859 1.14394 1.45598 1.06054 1.22469 1.01418 0.92823 0.96060 1.21951 0.86254 1.00485 0.97383 1.21672 0.92629 1.02302 0.99055 1.21381 0.95632 0.98187 0.85217 1.46743 1.08831 1.62309 1.20096 1.17217 0.82958 0.77622 0.84399 1.90677 1.52053 1.56623 1.46820 1.20597 0.93499 1.11327 0.90826 1.20670 0.96195 1.05968 0.97401 1.18407 0.94036 1.06532 0.96505 1.20555 0.98188 0.97332 0.94177 1.20821 0.96626 1.03114 0.96423 1.21083 0.93191 0.99767 1.00103 1.20269 0.99508 1.00967 0.92467 1.18883 0.91358 1.03949 0.92765 1.40291 1.07462 1.37998 1.08878 1.20741 0.81579 1.03805 1.52634 0.87358 1.28158 1.07303 0.92174 0.93338 1.70716 1.25396 1.15095 1.35725 0.82961 0.69342 0.76245 0.78258 1.20207 1.18885 1.17246 0.74018 0.91194 0.87457 0.94413 0.91569 0.91122 0.92870 0.89132 0.91257 0.90886 0.91366 0.91803 0.73896 0.83754 0.84367 0.83060 0.84047 0.88025 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 19.25 74.32 1.43 -1.80 16 2 C -0.21 -4.15 12.38 31.13 0.39 -3.76 16 3 C 0.16 2.71 5.46 84.50 0.46 3.17 16 4 N -0.55 -11.11 4.74 -933.61 -4.43 -15.54 16 5 C 0.02 0.38 9.14 127.69 1.17 1.55 16 6 C 0.07 1.27 4.96 86.30 0.43 1.70 16 7 C -0.12 -2.87 5.25 30.60 0.16 -2.71 16 8 C 0.12 3.58 5.68 86.38 0.49 4.07 16 9 N -0.72 -28.27 5.49 -466.88 -2.56 -30.83 16 10 C 0.59 27.30 7.76 86.51 0.67 27.97 16 11 O -0.58 -28.22 16.85 -4.22 -0.07 -28.29 16 12 C -0.05 -2.39 6.77 39.91 0.27 -2.12 16 13 C -0.17 -8.27 10.55 22.63 0.24 -8.03 16 14 C -0.15 -6.95 6.16 -21.34 -0.13 -7.08 16 15 C -0.08 -3.17 10.06 22.31 0.22 -2.94 16 16 C -0.15 -5.12 9.97 22.03 0.22 -4.90 16 17 C -0.12 -4.55 10.02 22.32 0.22 -4.32 16 18 C -0.11 -5.15 8.56 22.38 0.19 -4.96 16 19 C 0.04 2.21 5.42 39.06 0.21 2.42 16 20 N -0.28 -14.27 2.57 -331.33 -0.85 -15.12 16 21 C -0.46 -22.30 7.79 84.09 0.66 -21.65 16 22 H 0.11 4.90 6.27 -2.91 -0.02 4.88 16 23 C 0.00 0.05 4.40 84.95 0.37 0.43 16 24 N -0.84 -44.05 12.00 21.67 0.26 -43.79 16 25 Si 1.12 40.28 29.96 68.60 2.06 42.34 16 26 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 27 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 28 H -0.25 -7.94 7.11 99.48 0.71 -7.23 16 29 H 0.24 2.20 7.80 -4.42 -0.03 2.17 16 30 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 31 H 0.11 1.56 7.93 -2.39 -0.02 1.54 16 32 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 1.26 7.17 -2.39 -0.02 1.24 16 34 H 0.07 1.40 6.47 -2.39 -0.02 1.38 16 35 H 0.05 0.89 8.12 -2.38 -0.02 0.87 16 36 H 0.09 1.55 7.93 -2.39 -0.02 1.53 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.74 6.55 -2.39 -0.02 1.73 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.42 16.64 4.25 -92.71 -0.39 16.25 16 42 H 0.14 6.29 8.06 -2.91 -0.02 6.26 16 43 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 44 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 45 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 46 H 0.10 4.92 6.77 -2.91 -0.02 4.90 16 47 H 0.27 15.24 6.92 -92.71 -0.64 14.60 16 Total: -1.00 -65.15 391.62 2.79 -62.36 By element: Atomic # 1 Polarization: 51.14 SS G_CDS: 0.72 Total: 51.85 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 7.67 Total: -22.97 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -7.58 Total: -105.29 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.07 Total: -28.29 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.06 Total: 42.34 kcal Total: -65.15 2.79 -62.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818588685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.403 kcal (2) G-P(sol) polarization free energy of solvation -65.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds