Wall clock time and date at job start Sat Apr 11 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99796 * 2 1 4 4 C 1.46900 * 110.99882 * 123.95326 * 2 1 3 5 5 C 1.53001 * 109.46840 * 66.04794 * 4 2 1 6 6 C 1.53002 * 109.46604 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.46829 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00096 * 269.99615 * 7 6 5 9 9 C 1.50696 * 109.47033 * 269.99999 * 8 7 6 10 10 H 1.08000 * 120.00443 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99873 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99841 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00010 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47315 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47256 * 120.00087 * 13 11 9 16 16 H 1.48500 * 109.46843 * 239.99974 * 13 11 9 17 17 C 1.34783 * 119.99993 * 90.00149 * 7 6 5 18 18 O 1.21279 * 119.99774 * 359.97438 * 17 7 6 19 19 C 1.50705 * 119.99679 * 179.97438 * 17 7 6 20 20 N 1.46500 * 109.46576 * 179.97438 * 19 17 7 21 21 C 1.34784 * 126.58671 * 125.00421 * 20 19 17 22 22 C 1.36668 * 106.83741 * 180.23977 * 21 20 19 23 23 C 1.47378 * 125.78024 * 179.73707 * 22 21 20 24 24 O 1.21518 * 120.00371 * 359.97438 * 23 22 21 25 25 O 1.34755 * 119.99812 * 179.97438 * 23 22 21 26 26 N 1.34445 * 108.43336 * 359.59971 * 22 21 20 27 27 N 1.28756 * 109.51685 * 0.40680 * 26 22 21 28 28 H 1.08998 * 109.47236 * 296.05199 * 1 2 3 29 29 H 1.09002 * 109.46921 * 56.05051 * 1 2 3 30 30 H 1.09000 * 109.47414 * 176.04108 * 1 2 3 31 31 H 1.08997 * 109.46885 * 183.95358 * 3 2 1 32 32 H 1.09002 * 109.47050 * 303.95237 * 3 2 1 33 33 H 1.08995 * 109.47566 * 63.95433 * 3 2 1 34 34 H 1.08999 * 109.46985 * 306.04844 * 4 2 1 35 35 H 1.08998 * 109.46595 * 186.04997 * 4 2 1 36 36 H 1.08991 * 109.47171 * 59.99887 * 5 4 2 37 37 H 1.08997 * 109.47019 * 299.99200 * 5 4 2 38 38 H 1.08999 * 109.47207 * 60.00059 * 6 5 4 39 39 H 1.09003 * 109.47214 * 299.99709 * 6 5 4 40 40 H 1.09000 * 109.46857 * 30.00284 * 8 7 6 41 41 H 1.09000 * 109.46887 * 150.00455 * 8 7 6 42 42 H 0.97007 * 119.99786 * 179.97438 * 12 11 9 43 43 H 1.08994 * 109.47229 * 59.99942 * 19 17 7 44 44 H 1.08997 * 109.47055 * 299.99538 * 19 17 7 45 45 H 1.08002 * 126.57778 * 359.96682 * 21 20 19 46 46 H 0.96698 * 116.99714 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1792 -3.0402 2.1555 7 7 1.8302 -4.4540 1.9956 8 6 0.5731 -4.9652 2.5478 9 6 0.8014 -5.4414 3.9592 10 1 1.7843 -5.3700 4.4010 11 6 -0.2449 -5.9673 4.6871 12 7 -1.4422 -6.0528 4.1497 13 14 0.0378 -6.5569 6.4369 14 1 1.4620 -6.3523 6.8042 15 1 -0.8288 -5.7867 7.3649 16 1 -0.2950 -8.0010 6.5324 17 6 2.6656 -5.2845 1.3406 18 8 3.7060 -4.8612 0.8832 19 6 2.3067 -6.7390 1.1767 20 7 3.3686 -7.4232 0.4347 21 6 4.0469 -8.5190 0.8296 22 6 4.9420 -8.8091 -0.1616 23 6 5.9017 -9.9275 -0.1556 24 8 5.9421 -10.6886 0.7908 25 8 6.7346 -10.1062 -1.1999 26 7 4.7965 -7.9031 -1.1442 27 7 3.8743 -7.0641 -0.8227 28 1 -0.3633 0.4513 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7044 1.8724 0.9232 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1756 36 1 2.0658 -2.6213 0.0451 37 1 0.5472 -2.3475 0.9323 38 1 1.7445 -2.6614 3.0804 39 1 3.2635 -2.9354 2.1940 40 1 -0.1730 -4.1707 2.5486 41 1 0.2191 -5.7957 1.9370 42 1 -2.1782 -6.4231 4.6617 43 1 1.3688 -6.8222 0.6278 44 1 2.1951 -7.1986 2.1587 45 1 3.9122 -9.0608 1.7541 46 1 7.3466 -10.8532 -1.1504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830601118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:57 Heat of formation + Delta-G solvation = -20.158189 kcal Electronic energy + Delta-G solvation = -29351.617853 eV Core-core repulsion = 25086.126694 eV Total energy + Delta-G solvation = -4265.491159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16943 -39.89890 -39.39766 -37.65163 -36.14835 -35.49769 -34.41576 -33.08380 -31.76541 -31.05601 -28.67999 -27.67980 -27.55366 -25.81444 -24.48314 -23.26747 -23.06178 -21.96892 -21.15546 -20.70189 -19.08594 -18.01705 -17.52990 -17.03715 -16.74995 -16.27075 -15.92056 -15.65728 -15.50108 -15.17446 -14.95438 -14.81735 -14.54462 -14.48082 -14.22563 -13.84386 -13.62250 -13.00895 -12.84838 -12.44837 -12.40763 -12.18233 -11.95363 -11.84593 -11.76681 -11.68810 -11.64280 -11.34245 -11.26584 -11.18296 -11.08238 -10.96883 -10.83122 -10.58343 -10.41820 -10.22589 -9.95389 -9.42593 -9.23593 -8.78650 -8.38423 -8.01112 -6.41115 -4.51302 1.08435 1.63051 1.99836 2.93775 2.98091 3.04157 3.07298 3.18080 3.20765 3.50789 3.97908 4.13873 4.29899 4.63179 4.77356 4.92588 4.95854 5.02654 5.09331 5.11069 5.22597 5.26820 5.34281 5.49859 5.53858 5.59451 5.60698 5.69999 5.75822 5.81128 5.84914 5.93800 6.04544 6.27826 6.32225 6.36094 6.45227 6.56169 6.87955 6.99818 7.02329 7.23482 7.52958 7.74502 7.77872 7.98673 8.10398 8.49912 8.66331 9.19258 10.65046 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006891 B = 0.003595 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4062.007017 B = 7786.479464 C =11269.016836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.125 3.875 7 N -0.586 5.586 8 C 0.232 3.768 9 C -0.550 4.550 10 H 0.064 0.936 11 C 0.069 3.931 12 N -0.886 5.886 13 Si 0.896 3.104 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.280 1.280 17 C 0.507 3.493 18 O -0.544 6.544 19 C 0.102 3.898 20 N -0.337 5.337 21 C 0.109 3.891 22 C -0.105 4.105 23 C 0.582 3.418 24 O -0.518 6.518 25 O -0.498 6.498 26 N -0.194 5.194 27 N -0.025 5.025 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.268 0.732 43 H 0.130 0.870 44 H 0.148 0.852 45 H 0.209 0.791 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.154 2.112 -5.617 7.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.001 3.999 7 N -0.317 5.317 8 C 0.113 3.887 9 C -0.589 4.589 10 H 0.082 0.918 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.206 1.206 17 C 0.292 3.708 18 O -0.422 6.422 19 C -0.022 4.022 20 N -0.119 5.119 21 C -0.049 4.049 22 C -0.241 4.241 23 C 0.424 3.576 24 O -0.406 6.406 25 O -0.308 6.308 26 N -0.070 5.070 27 N -0.007 5.007 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.148 0.852 44 H 0.166 0.834 45 H 0.225 0.775 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 5.234 3.202 -7.127 9.404 hybrid contribution -0.169 -1.008 2.878 3.054 sum 5.066 2.194 -4.249 6.966 Atomic orbital electron populations 1.22442 0.87374 1.02755 1.00132 1.61965 1.08116 1.13469 1.43661 1.22365 1.00760 0.88999 1.00202 1.22063 1.00104 0.93808 0.90943 1.21941 1.01584 0.93391 0.99920 1.21247 1.00681 0.80270 0.97700 1.48116 1.22322 1.08164 1.53113 1.19552 0.79720 0.95566 0.93896 1.21520 0.96389 1.42634 0.98309 0.91783 1.24947 0.94802 0.95182 0.98593 1.69917 1.00540 1.44267 1.37593 0.86467 0.78631 0.78622 0.83987 1.19561 1.20698 1.20632 1.19951 0.84425 0.87151 0.79318 1.90737 1.24870 1.77058 1.49563 1.22120 0.87967 0.93212 0.98920 1.50164 1.26994 1.19080 1.15657 1.23335 0.91688 0.89551 1.00317 1.20025 1.05497 1.02290 0.96327 1.19095 0.77753 0.81536 0.79236 1.90929 1.69211 1.45006 1.35420 1.84658 1.48449 1.53302 1.44397 1.74796 1.09505 1.00445 1.22219 1.82207 1.07906 1.16650 0.93940 0.95662 0.91723 0.90761 0.91425 0.91579 0.95841 0.94683 0.90749 0.90858 0.91605 0.90211 0.90815 0.93982 0.94527 0.92270 0.85247 0.83435 0.77475 0.72859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.07 0.56 0.80 16 2 N -0.55 -6.89 5.02 -251.26 -1.26 -8.15 16 3 C 0.03 0.26 9.57 60.06 0.57 0.83 16 4 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 5 C -0.13 -1.92 5.46 -26.73 -0.15 -2.07 16 6 C 0.12 2.05 5.41 -4.04 -0.02 2.03 16 7 N -0.59 -10.66 2.46 -175.05 -0.43 -11.09 16 8 C 0.23 4.69 4.97 -5.19 -0.03 4.66 16 9 C -0.55 -12.44 9.28 -34.44 -0.32 -12.76 16 10 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 11 C 0.07 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -22.00 13.29 55.43 0.74 -21.27 16 13 Si 0.90 18.66 29.54 -169.99 -5.02 13.64 16 14 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 17 C 0.51 9.27 7.71 -10.98 -0.08 9.19 16 18 O -0.54 -11.46 15.31 5.56 0.09 -11.37 16 19 C 0.10 1.55 5.57 -5.19 -0.03 1.52 16 20 N -0.34 -5.32 3.41 -62.23 -0.21 -5.53 16 21 C 0.11 1.51 11.27 -16.82 -0.19 1.32 16 22 C -0.11 -1.60 7.02 -83.57 -0.59 -2.18 16 23 C 0.58 7.85 8.33 34.45 0.29 8.13 16 24 O -0.52 -7.62 17.65 -19.28 -0.34 -7.96 16 25 O -0.50 -5.41 13.44 -40.64 -0.55 -5.95 16 26 N -0.19 -3.39 12.39 32.83 0.41 -2.99 16 27 N -0.03 -0.46 12.88 60.35 0.78 0.32 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.89 6.47 -51.93 -0.34 0.56 16 31 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 38 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 39 H 0.07 1.25 7.42 -51.93 -0.39 0.86 16 40 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 41 H 0.04 0.74 6.44 -51.93 -0.33 0.40 16 42 H 0.27 6.37 8.31 -40.82 -0.34 6.04 16 43 H 0.13 1.77 7.40 -51.93 -0.38 1.39 16 44 H 0.15 2.05 7.94 -51.93 -0.41 1.64 16 45 H 0.21 2.11 8.06 -52.49 -0.42 1.69 16 46 H 0.41 2.14 9.11 45.56 0.42 2.56 16 LS Contribution 397.66 15.07 5.99 5.99 Total: -1.00 -31.13 397.66 -5.87 -37.00 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.96 Total: 3.63 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: -0.10 Total: 13.74 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.02 Total: -48.71 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.80 Total: -25.29 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.13 -5.87 -37.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830601118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.839 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds