Wall clock time and date at job start Sat Apr 11 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99796 * 2 1 4 4 C 1.46900 * 110.99882 * 123.95326 * 2 1 3 5 5 C 1.53001 * 109.46840 * 66.04794 * 4 2 1 6 6 C 1.53002 * 109.46604 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.46829 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00096 * 269.99615 * 7 6 5 9 9 C 1.50696 * 109.47033 * 269.99999 * 8 7 6 10 10 H 1.08000 * 120.00443 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99873 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99841 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00010 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47315 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47256 * 120.00087 * 13 11 9 16 16 H 1.48500 * 109.46843 * 239.99974 * 13 11 9 17 17 C 1.34783 * 119.99993 * 90.00149 * 7 6 5 18 18 O 1.21279 * 119.99774 * 359.97438 * 17 7 6 19 19 C 1.50705 * 119.99679 * 179.97438 * 17 7 6 20 20 N 1.46500 * 109.46576 * 179.97438 * 19 17 7 21 21 C 1.34784 * 126.58671 * 125.00421 * 20 19 17 22 22 C 1.36668 * 106.83741 * 180.23977 * 21 20 19 23 23 C 1.47378 * 125.78024 * 179.73707 * 22 21 20 24 24 O 1.21518 * 120.00371 * 359.97438 * 23 22 21 25 25 O 1.34755 * 119.99812 * 179.97438 * 23 22 21 26 26 N 1.34445 * 108.43336 * 359.59971 * 22 21 20 27 27 N 1.28756 * 109.51685 * 0.40680 * 26 22 21 28 28 H 1.08998 * 109.47236 * 296.05199 * 1 2 3 29 29 H 1.09002 * 109.46921 * 56.05051 * 1 2 3 30 30 H 1.09000 * 109.47414 * 176.04108 * 1 2 3 31 31 H 1.08997 * 109.46885 * 183.95358 * 3 2 1 32 32 H 1.09002 * 109.47050 * 303.95237 * 3 2 1 33 33 H 1.08995 * 109.47566 * 63.95433 * 3 2 1 34 34 H 1.08999 * 109.46985 * 306.04844 * 4 2 1 35 35 H 1.08998 * 109.46595 * 186.04997 * 4 2 1 36 36 H 1.08991 * 109.47171 * 59.99887 * 5 4 2 37 37 H 1.08997 * 109.47019 * 299.99200 * 5 4 2 38 38 H 1.08999 * 109.47207 * 60.00059 * 6 5 4 39 39 H 1.09003 * 109.47214 * 299.99709 * 6 5 4 40 40 H 1.09000 * 109.46857 * 30.00284 * 8 7 6 41 41 H 1.09000 * 109.46887 * 150.00455 * 8 7 6 42 42 H 0.97007 * 119.99786 * 179.97438 * 12 11 9 43 43 H 1.08994 * 109.47229 * 59.99942 * 19 17 7 44 44 H 1.08997 * 109.47055 * 299.99538 * 19 17 7 45 45 H 1.08002 * 126.57778 * 359.96682 * 21 20 19 46 46 H 0.96698 * 116.99714 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1792 -3.0402 2.1555 7 7 1.8302 -4.4540 1.9956 8 6 0.5731 -4.9652 2.5478 9 6 0.8014 -5.4414 3.9592 10 1 1.7843 -5.3700 4.4010 11 6 -0.2449 -5.9673 4.6871 12 7 -1.4422 -6.0528 4.1497 13 14 0.0378 -6.5569 6.4369 14 1 1.4620 -6.3523 6.8042 15 1 -0.8288 -5.7867 7.3649 16 1 -0.2950 -8.0010 6.5324 17 6 2.6656 -5.2845 1.3406 18 8 3.7060 -4.8612 0.8832 19 6 2.3067 -6.7390 1.1767 20 7 3.3686 -7.4232 0.4347 21 6 4.0469 -8.5190 0.8296 22 6 4.9420 -8.8091 -0.1616 23 6 5.9017 -9.9275 -0.1556 24 8 5.9421 -10.6886 0.7908 25 8 6.7346 -10.1062 -1.1999 26 7 4.7965 -7.9031 -1.1442 27 7 3.8743 -7.0641 -0.8227 28 1 -0.3633 0.4513 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7044 1.8724 0.9232 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1756 36 1 2.0658 -2.6213 0.0451 37 1 0.5472 -2.3475 0.9323 38 1 1.7445 -2.6614 3.0804 39 1 3.2635 -2.9354 2.1940 40 1 -0.1730 -4.1707 2.5486 41 1 0.2191 -5.7957 1.9370 42 1 -2.1782 -6.4231 4.6617 43 1 1.3688 -6.8222 0.6278 44 1 2.1951 -7.1986 2.1587 45 1 3.9122 -9.0608 1.7541 46 1 7.3466 -10.8532 -1.1504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830601118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:56 Heat of formation + Delta-G solvation = -42.571101 kcal Electronic energy + Delta-G solvation = -29352.589750 eV Core-core repulsion = 25086.126694 eV Total energy + Delta-G solvation = -4266.463056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.36885 -41.03107 -40.74106 -38.67760 -37.11814 -36.97964 -35.70000 -34.74179 -33.10747 -32.22911 -29.90681 -29.25602 -28.49095 -27.01432 -25.59317 -24.95367 -24.23234 -23.15738 -22.26748 -21.79613 -20.41517 -19.17997 -18.66506 -18.57198 -18.29300 -17.52709 -17.08766 -16.82743 -16.54967 -16.49051 -16.24058 -15.98577 -15.94380 -15.63094 -15.38471 -14.97370 -14.66362 -14.40347 -14.38138 -13.83523 -13.54512 -13.31948 -13.19753 -13.14157 -13.10275 -12.72331 -12.66003 -12.61341 -12.60783 -12.45645 -12.40296 -12.33353 -12.07589 -11.91110 -11.81830 -11.66795 -11.50177 -10.86272 -10.58842 -10.46178 -9.56101 -9.32301 -8.20666 -6.35245 -0.01526 0.41538 0.83891 1.43118 1.48855 1.53738 1.58412 1.92903 1.97892 2.12718 2.43148 3.01138 3.11545 3.17887 3.34528 3.67212 3.77577 3.92507 4.04131 4.06953 4.12427 4.22187 4.37722 4.39659 4.44910 4.49847 4.60895 4.65416 4.71839 4.73542 4.78665 4.86793 4.99292 5.01122 5.09308 5.16934 5.22469 5.28513 5.47097 5.64587 5.77452 6.02743 6.04767 6.10685 6.45544 6.75999 6.77796 7.02209 7.13527 7.38930 8.84635 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006891 B = 0.003595 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4062.007017 B = 7786.479464 C =11269.016836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.567 5.567 3 C 0.025 3.975 4 C 0.065 3.935 5 C -0.114 4.114 6 C 0.124 3.876 7 N -0.587 5.587 8 C 0.246 3.754 9 C -0.549 4.549 10 H 0.058 0.942 11 C 0.032 3.968 12 N -0.914 5.914 13 Si 0.949 3.051 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.503 3.497 18 O -0.573 6.573 19 C 0.107 3.893 20 N -0.340 5.340 21 C 0.122 3.878 22 C -0.118 4.118 23 C 0.590 3.410 24 O -0.531 6.531 25 O -0.497 6.497 26 N -0.211 5.211 27 N -0.064 5.064 28 H 0.029 0.971 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.042 0.958 42 H 0.268 0.732 43 H 0.145 0.855 44 H 0.166 0.834 45 H 0.245 0.755 46 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.452 1.704 -4.937 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.291 5.291 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.153 4.153 6 C 0.001 3.999 7 N -0.317 5.317 8 C 0.126 3.874 9 C -0.587 4.587 10 H 0.076 0.924 11 C -0.170 4.170 12 N -0.553 5.553 13 Si 0.775 3.225 14 H -0.195 1.195 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.290 3.710 18 O -0.454 6.454 19 C -0.017 4.017 20 N -0.122 5.122 21 C -0.035 4.035 22 C -0.255 4.255 23 C 0.433 3.567 24 O -0.420 6.420 25 O -0.310 6.310 26 N -0.085 5.085 27 N -0.045 5.045 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.162 0.838 44 H 0.183 0.817 45 H 0.261 0.739 46 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 5.556 2.797 -6.470 8.975 hybrid contribution -0.200 -0.879 2.632 2.782 sum 5.356 1.918 -3.838 6.862 Atomic orbital electron populations 1.22445 0.86814 1.02328 1.01020 1.61956 1.08825 1.14917 1.43394 1.22416 1.00966 0.87758 1.01133 1.21961 1.00293 0.92487 0.91603 1.21749 1.00890 0.94609 0.98032 1.21314 1.00366 0.79786 0.98452 1.48121 1.21771 1.08926 1.52924 1.19273 0.80001 0.95030 0.93138 1.21681 0.95916 1.41912 0.99206 0.92384 1.25506 0.94651 0.95503 1.01305 1.69991 1.01159 1.45385 1.38738 0.85641 0.78193 0.78128 0.80506 1.19499 1.21229 1.20291 1.20418 0.83794 0.88349 0.78477 1.90723 1.26082 1.77924 1.50676 1.22165 0.88380 0.91179 0.99953 1.50179 1.27208 1.19608 1.15232 1.23971 0.90141 0.88510 1.00913 1.20462 1.06270 1.02517 0.96243 1.18814 0.77664 0.80828 0.79417 1.90926 1.69738 1.45359 1.36024 1.84608 1.48480 1.54650 1.43228 1.74752 1.09594 1.00954 1.23235 1.82173 1.09116 1.17799 0.95454 0.95259 0.90223 0.91967 0.91148 0.90295 0.95145 0.94014 0.90568 0.93053 0.91999 0.90000 0.91379 0.95567 0.94046 0.92278 0.83777 0.81705 0.73882 0.69986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.32 127.69 1.19 1.67 16 2 N -0.57 -13.76 5.02 -948.84 -4.76 -18.52 16 3 C 0.03 0.47 9.57 127.69 1.22 1.69 16 4 C 0.07 1.66 4.96 86.30 0.43 2.08 16 5 C -0.11 -3.42 5.46 30.60 0.17 -3.26 16 6 C 0.12 4.10 5.41 86.38 0.47 4.56 16 7 N -0.59 -21.28 2.46 -826.13 -2.03 -23.31 16 8 C 0.25 9.82 4.97 85.63 0.43 10.25 16 9 C -0.55 -24.27 9.28 25.60 0.24 -24.03 16 10 H 0.06 2.62 7.81 -2.91 -0.02 2.60 16 11 C 0.03 1.47 5.46 84.66 0.46 1.93 16 12 N -0.91 -44.75 13.29 21.45 0.28 -44.46 16 13 Si 0.95 37.36 29.54 68.60 2.03 39.39 16 14 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 15 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 17 C 0.50 18.31 7.71 87.66 0.68 18.99 16 18 O -0.57 -24.38 15.31 -3.03 -0.05 -24.43 16 19 C 0.11 3.13 5.57 85.63 0.48 3.60 16 20 N -0.34 -10.42 3.41 -350.79 -1.20 -11.62 16 21 C 0.12 3.16 11.27 83.87 0.95 4.10 16 22 C -0.12 -3.44 7.02 40.78 0.29 -3.15 16 23 C 0.59 14.95 8.33 70.23 0.59 15.54 16 24 O -0.53 -14.58 17.65 19.78 0.35 -14.23 16 25 O -0.50 -9.89 13.44 -56.66 -0.76 -10.65 16 26 N -0.21 -7.31 12.39 -50.04 -0.62 -7.93 16 27 N -0.06 -2.35 12.88 37.02 0.48 -1.87 16 28 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 30 H 0.06 1.49 6.47 -2.39 -0.02 1.47 16 31 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 32 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 33 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.04 1.01 8.12 -2.39 -0.02 0.99 16 35 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.90 6.55 -2.39 -0.02 1.88 16 38 H 0.08 2.65 8.07 -2.39 -0.02 2.63 16 39 H 0.07 2.33 7.42 -2.39 -0.02 2.31 16 40 H 0.03 1.14 8.07 -2.39 -0.02 1.12 16 41 H 0.04 1.63 6.44 -2.39 -0.02 1.61 16 42 H 0.27 12.59 8.31 -92.70 -0.77 11.82 16 43 H 0.14 3.79 7.40 -2.39 -0.02 3.77 16 44 H 0.17 4.26 7.94 -2.39 -0.02 4.24 16 45 H 0.25 4.20 8.06 -2.91 -0.02 4.18 16 46 H 0.44 3.54 9.11 -74.06 -0.67 2.87 16 Total: -1.00 -65.68 397.66 1.63 -64.05 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.33 Total: 19.59 kcal Atomic # 6 Polarization: 26.42 SS G_CDS: 7.57 Total: 33.99 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -7.84 Total: -107.72 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -0.46 Total: -49.31 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -65.68 1.63 -64.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830601118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.481 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds