Wall clock time and date at job start Sat Apr 11 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40090 * 126.03911 * 2 1 4 4 C 1.30829 * 108.20521 * 180.02562 * 3 2 1 5 5 C 1.39867 * 108.20531 * 0.02562 * 4 3 2 6 6 C 1.50707 * 126.04208 * 180.02562 * 5 4 3 7 7 C 1.53000 * 117.49376 * 8.61830 * 6 5 4 8 8 C 1.53002 * 60.00115 * 252.51123 * 7 6 5 9 9 C 1.34941 * 126.03636 * 180.02562 * 2 1 3 10 10 C 1.50699 * 126.12924 * 359.70242 * 9 2 1 11 11 N 1.46504 * 109.47111 * 90.03057 * 10 9 2 12 12 C 1.34770 * 120.00184 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99795 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00127 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.47054 * 179.97438 * 14 12 11 16 16 C 1.37635 * 120.13029 * 264.99730 * 15 14 12 17 17 C 1.38612 * 120.24746 * 179.97438 * 16 15 14 18 18 C 1.38654 * 120.50522 * 0.02744 * 17 16 15 19 19 C 1.37604 * 120.24689 * 0.02562 * 18 17 16 20 20 C 1.40704 * 120.12386 * 84.72816 * 15 14 12 21 21 C 1.41391 * 120.24580 * 359.97438 * 20 15 14 22 22 H 1.07995 * 120.00295 * 333.90387 * 21 20 15 23 23 C 1.39952 * 119.99965 * 153.89746 * 21 20 15 24 24 N 1.30821 * 119.99976 * 343.71671 * 23 21 20 25 25 Si 1.86793 * 119.99983 * 163.71476 * 23 21 20 26 26 H 1.48499 * 109.47386 * 89.99932 * 25 23 21 27 27 H 1.48497 * 109.47279 * 210.00447 * 25 23 21 28 28 H 1.48507 * 109.47005 * 330.00206 * 25 23 21 29 29 H 1.09000 * 109.46386 * 269.96864 * 1 2 3 30 30 H 1.09000 * 109.47443 * 29.96359 * 1 2 3 31 31 H 1.08992 * 109.47433 * 149.96892 * 1 2 3 32 32 H 1.08002 * 125.89643 * 180.02562 * 4 3 2 33 33 H 1.08994 * 115.54891 * 154.32863 * 6 5 4 34 34 H 1.09001 * 117.50223 * 0.02562 * 7 6 5 35 35 H 1.09005 * 117.49626 * 145.01983 * 7 6 5 36 36 H 1.08993 * 117.50368 * 252.51668 * 8 7 6 37 37 H 1.09002 * 117.49634 * 107.48496 * 8 7 6 38 38 H 1.09004 * 109.47194 * 210.02859 * 10 9 2 39 39 H 1.08997 * 109.46992 * 330.02891 * 10 9 2 40 40 H 0.97002 * 119.99593 * 359.97438 * 11 10 9 41 41 H 1.08998 * 109.46689 * 299.99431 * 14 12 11 42 42 H 1.08994 * 109.46860 * 59.99990 * 14 12 11 43 43 H 1.07996 * 119.87771 * 0.02562 * 16 15 14 44 44 H 1.08000 * 119.74847 * 179.97438 * 17 16 15 45 45 H 1.08000 * 119.87715 * 179.97438 * 18 17 16 46 46 H 1.07999 * 120.12607 * 179.97438 * 19 18 17 47 47 H 0.96995 * 119.99905 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6665 -0.0015 6 6 4.7680 -1.5453 -0.0019 7 6 6.1243 -0.8672 0.2023 8 6 5.7379 -1.4052 -1.1769 9 6 2.2589 -1.0912 -0.0005 10 6 1.7974 -2.5258 0.0052 11 7 1.6427 -2.9945 -1.3742 12 6 1.2355 -4.2563 -1.6155 13 8 0.9975 -5.0040 -0.6907 14 6 1.0759 -4.7383 -3.0345 15 6 0.6144 -6.1729 -3.0288 16 6 1.5314 -7.1939 -3.1337 17 6 1.1097 -8.5143 -3.1282 18 6 -0.2377 -8.8225 -3.0178 19 6 -1.1721 -7.8178 -2.9129 20 6 -0.7550 -6.4737 -2.9105 21 6 -1.7054 -5.4333 -2.7959 22 1 -1.4137 -4.4783 -2.3846 23 6 -3.0243 -5.6409 -3.2156 24 7 -3.3117 -6.6533 -3.9928 25 14 -4.3742 -4.4727 -2.6660 26 1 -4.4994 -3.3644 -3.6464 27 1 -5.6617 -5.2079 -2.5829 28 1 -4.0347 -3.9168 -1.3314 29 1 -0.3632 -0.0006 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8896 -0.5143 32 1 4.4054 1.3710 -0.0003 33 1 4.6330 -2.5398 0.4234 34 1 6.1310 0.2144 0.3373 35 1 6.8819 -1.4156 0.7622 36 1 6.2411 -2.3074 -1.5244 37 1 5.4903 -0.6774 -1.9497 38 1 2.5352 -3.1428 0.5180 39 1 0.8408 -2.5976 0.5228 40 1 1.8327 -2.3963 -2.1138 41 1 0.3380 -4.1210 -3.5469 42 1 2.0323 -4.6666 -3.5522 43 1 2.5834 -6.9655 -3.2197 44 1 1.8361 -9.3092 -3.2113 45 1 -0.5550 -9.8548 -3.0150 46 1 -2.2211 -8.0601 -2.8274 47 1 -4.2257 -6.7970 -4.2839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855790495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:09 Heat of formation + Delta-G solvation = 80.842784 kcal Electronic energy + Delta-G solvation = -28791.268558 eV Core-core repulsion = 24941.006393 eV Total energy + Delta-G solvation = -3850.262165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63710 -39.20159 -37.34277 -37.22354 -34.73503 -33.62384 -33.09251 -31.82886 -30.69972 -29.44834 -27.42046 -26.92441 -25.67912 -24.74632 -23.10388 -22.47690 -20.94223 -20.63401 -20.51266 -19.67020 -19.21049 -17.26109 -16.99489 -16.25217 -15.87965 -15.86888 -15.44170 -15.13956 -14.85918 -14.44376 -14.36374 -14.28016 -13.72121 -13.56307 -13.12502 -13.00139 -12.90533 -12.72349 -12.57671 -12.26625 -11.97253 -11.72180 -11.66915 -11.58330 -11.16858 -11.03141 -11.01098 -10.98557 -10.73364 -10.71219 -10.47977 -10.41029 -9.67159 -9.48320 -9.38721 -9.19154 -9.15241 -8.83596 -8.35259 -7.30513 -7.28865 -6.74052 -4.34712 1.52299 2.29394 2.45853 2.78173 2.98279 3.04598 3.08192 3.26014 3.28669 3.69583 3.87625 3.91530 4.25230 4.34725 4.66098 4.71131 4.75459 4.90957 4.97783 5.00765 5.13377 5.18883 5.28118 5.39452 5.48708 5.57343 5.65884 5.73935 5.81054 5.94882 5.98117 6.02614 6.10522 6.13510 6.29620 6.42194 6.42614 6.52013 6.61871 6.76966 6.80454 7.07926 7.30186 7.42806 7.49617 7.63879 7.82899 7.94333 8.06969 8.13825 8.31628 8.64492 8.79178 8.91355 9.01869 10.20121 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.003344 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.067394 B = 8370.752329 C =10391.002528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.362 5.362 3 N -0.290 5.290 4 C 0.048 3.952 5 C -0.187 4.187 6 C -0.075 4.075 7 C -0.177 4.177 8 C -0.172 4.172 9 C 0.076 3.924 10 C 0.187 3.813 11 N -0.740 5.740 12 C 0.517 3.483 13 O -0.518 6.518 14 C -0.069 4.069 15 C -0.181 4.181 16 C -0.081 4.081 17 C -0.239 4.239 18 C -0.107 4.107 19 C -0.160 4.160 20 C 0.129 3.871 21 C -0.457 4.457 22 H 0.073 0.927 23 C 0.077 3.923 24 N -0.795 5.795 25 Si 0.901 3.099 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.262 1.262 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.181 0.819 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.398 0.602 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.653 13.088 4.921 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.145 5.145 3 N -0.111 5.111 4 C -0.137 4.137 5 C -0.199 4.199 6 C -0.094 4.094 7 C -0.214 4.214 8 C -0.209 4.209 9 C -0.052 4.052 10 C 0.061 3.939 11 N -0.396 5.396 12 C 0.305 3.695 13 O -0.391 6.391 14 C -0.109 4.109 15 C -0.183 4.183 16 C -0.099 4.099 17 C -0.258 4.258 18 C -0.126 4.126 19 C -0.179 4.179 20 C 0.127 3.873 21 C -0.487 4.487 22 H 0.091 0.909 23 C -0.140 4.140 24 N -0.421 5.421 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.186 1.186 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.198 0.802 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.232 0.768 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.135 0.865 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.279 13.428 5.488 17.220 hybrid contribution -0.124 0.184 -0.092 0.240 sum 9.155 13.611 5.397 17.269 Atomic orbital electron populations 1.21965 0.73818 1.05056 1.03743 1.48430 1.06663 1.03139 1.56236 1.77371 1.01576 1.08023 1.24176 1.23656 0.95171 0.94289 1.00595 1.19057 0.92457 0.93116 1.15282 1.20204 0.87183 0.98599 1.03396 1.22957 0.97728 1.00598 1.00078 1.22999 1.03013 1.03268 0.91644 1.20777 0.90792 0.90230 1.03403 1.19619 1.01906 0.86399 0.85934 1.46176 1.72039 1.14567 1.06856 1.21298 0.75134 0.80079 0.92996 1.90696 1.47751 1.54511 1.46172 1.20253 1.01627 0.97233 0.91758 1.19043 0.94146 0.91033 1.14065 1.20301 0.96354 0.93035 1.00217 1.20309 0.95061 0.94962 1.15491 1.20682 0.93513 0.97283 1.01078 1.21298 0.98721 0.92286 1.05571 1.17327 0.90419 0.92649 0.86905 1.19435 0.93205 0.99395 1.36622 0.90908 1.25871 0.99820 0.95606 0.92747 1.69815 1.21240 1.26927 1.24081 0.86429 0.80064 0.80695 0.80235 1.19575 1.20065 1.18614 0.90469 0.89029 0.88870 0.80245 0.87223 0.88858 0.88688 0.88631 0.88823 0.89252 0.90673 0.76825 0.88611 0.90497 0.89737 0.89669 0.89596 0.86545 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 11.09 59.85 0.66 1.55 16 2 N -0.36 -4.26 4.01 -63.89 -0.26 -4.52 16 3 N -0.29 -3.64 12.58 30.62 0.39 -3.26 16 4 C 0.05 0.52 11.35 -17.37 -0.20 0.32 16 5 C -0.19 -2.06 5.76 -105.05 -0.61 -2.66 16 6 C -0.07 -0.72 5.95 -91.77 -0.55 -1.26 16 7 C -0.18 -1.37 10.02 -26.73 -0.27 -1.64 16 8 C -0.17 -1.46 10.23 -26.73 -0.27 -1.73 16 9 C 0.08 0.89 6.30 -82.27 -0.52 0.37 16 10 C 0.19 2.38 5.47 -5.19 -0.03 2.35 16 11 N -0.74 -10.21 5.55 -61.47 -0.34 -10.56 16 12 C 0.52 9.52 7.44 -10.99 -0.08 9.44 16 13 O -0.52 -11.84 16.03 5.55 0.09 -11.75 16 14 C -0.07 -1.30 5.18 -29.03 -0.15 -1.45 16 15 C -0.18 -4.27 4.43 -103.91 -0.46 -4.73 16 16 C -0.08 -1.84 9.66 -39.66 -0.38 -2.22 16 17 C -0.24 -5.51 10.05 -39.29 -0.39 -5.91 16 18 C -0.11 -2.60 10.02 -39.66 -0.40 -2.99 16 19 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 20 C 0.13 3.40 5.56 -106.82 -0.59 2.81 16 21 C -0.46 -11.75 8.14 -37.74 -0.31 -12.06 16 22 H 0.07 1.80 6.67 -52.49 -0.35 1.45 16 23 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 24 N -0.79 -20.28 10.96 55.55 0.61 -19.67 16 25 Si 0.90 18.39 29.59 -169.99 -5.03 13.36 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 27 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 28 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.87 7.67 -51.93 -0.40 0.47 16 32 H 0.18 1.43 7.19 -52.49 -0.38 1.05 16 33 H 0.11 1.10 7.41 -51.93 -0.38 0.72 16 34 H 0.09 0.64 6.97 -51.93 -0.36 0.28 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.16 7.32 -51.93 -0.38 0.78 16 39 H 0.08 1.00 7.73 -51.93 -0.40 0.60 16 40 H 0.40 4.70 8.46 -40.82 -0.35 4.35 16 41 H 0.10 1.78 7.08 -51.93 -0.37 1.41 16 42 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 43 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 46 H 0.12 3.17 6.20 -52.49 -0.33 2.85 16 47 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -31.44 394.51 -10.20 -41.63 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.63 Total: 11.39 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -4.97 Total: -22.57 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.40 Total: -38.01 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.44 -10.20 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855790495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.477 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds