Wall clock time and date at job start Sat Apr 11 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40090 * 126.03911 * 2 1 4 4 C 1.30829 * 108.20521 * 180.02562 * 3 2 1 5 5 C 1.39867 * 108.20531 * 0.02562 * 4 3 2 6 6 C 1.50707 * 126.04208 * 180.02562 * 5 4 3 7 7 C 1.53000 * 117.49376 * 8.61830 * 6 5 4 8 8 C 1.53002 * 60.00115 * 252.51123 * 7 6 5 9 9 C 1.34941 * 126.03636 * 180.02562 * 2 1 3 10 10 C 1.50699 * 126.12924 * 359.70242 * 9 2 1 11 11 N 1.46504 * 109.47111 * 90.03057 * 10 9 2 12 12 C 1.34770 * 120.00184 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99795 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00127 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.47054 * 179.97438 * 14 12 11 16 16 C 1.37635 * 120.13029 * 264.99730 * 15 14 12 17 17 C 1.38612 * 120.24746 * 179.97438 * 16 15 14 18 18 C 1.38654 * 120.50522 * 0.02744 * 17 16 15 19 19 C 1.37604 * 120.24689 * 0.02562 * 18 17 16 20 20 C 1.40704 * 120.12386 * 84.72816 * 15 14 12 21 21 C 1.41391 * 120.24580 * 359.97438 * 20 15 14 22 22 H 1.07995 * 120.00295 * 333.90387 * 21 20 15 23 23 C 1.39952 * 119.99965 * 153.89746 * 21 20 15 24 24 N 1.30821 * 119.99976 * 343.71671 * 23 21 20 25 25 Si 1.86793 * 119.99983 * 163.71476 * 23 21 20 26 26 H 1.48499 * 109.47386 * 89.99932 * 25 23 21 27 27 H 1.48497 * 109.47279 * 210.00447 * 25 23 21 28 28 H 1.48507 * 109.47005 * 330.00206 * 25 23 21 29 29 H 1.09000 * 109.46386 * 269.96864 * 1 2 3 30 30 H 1.09000 * 109.47443 * 29.96359 * 1 2 3 31 31 H 1.08992 * 109.47433 * 149.96892 * 1 2 3 32 32 H 1.08002 * 125.89643 * 180.02562 * 4 3 2 33 33 H 1.08994 * 115.54891 * 154.32863 * 6 5 4 34 34 H 1.09001 * 117.50223 * 0.02562 * 7 6 5 35 35 H 1.09005 * 117.49626 * 145.01983 * 7 6 5 36 36 H 1.08993 * 117.50368 * 252.51668 * 8 7 6 37 37 H 1.09002 * 117.49634 * 107.48496 * 8 7 6 38 38 H 1.09004 * 109.47194 * 210.02859 * 10 9 2 39 39 H 1.08997 * 109.46992 * 330.02891 * 10 9 2 40 40 H 0.97002 * 119.99593 * 359.97438 * 11 10 9 41 41 H 1.08998 * 109.46689 * 299.99431 * 14 12 11 42 42 H 1.08994 * 109.46860 * 59.99990 * 14 12 11 43 43 H 1.07996 * 119.87771 * 0.02562 * 16 15 14 44 44 H 1.08000 * 119.74847 * 179.97438 * 17 16 15 45 45 H 1.08000 * 119.87715 * 179.97438 * 18 17 16 46 46 H 1.07999 * 120.12607 * 179.97438 * 19 18 17 47 47 H 0.96995 * 119.99905 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6665 -0.0015 6 6 4.7680 -1.5453 -0.0019 7 6 6.1243 -0.8672 0.2023 8 6 5.7379 -1.4052 -1.1769 9 6 2.2589 -1.0912 -0.0005 10 6 1.7974 -2.5258 0.0052 11 7 1.6427 -2.9945 -1.3742 12 6 1.2355 -4.2563 -1.6155 13 8 0.9975 -5.0040 -0.6907 14 6 1.0759 -4.7383 -3.0345 15 6 0.6144 -6.1729 -3.0288 16 6 1.5314 -7.1939 -3.1337 17 6 1.1097 -8.5143 -3.1282 18 6 -0.2377 -8.8225 -3.0178 19 6 -1.1721 -7.8178 -2.9129 20 6 -0.7550 -6.4737 -2.9105 21 6 -1.7054 -5.4333 -2.7959 22 1 -1.4137 -4.4783 -2.3846 23 6 -3.0243 -5.6409 -3.2156 24 7 -3.3117 -6.6533 -3.9928 25 14 -4.3742 -4.4727 -2.6660 26 1 -4.4994 -3.3644 -3.6464 27 1 -5.6617 -5.2079 -2.5829 28 1 -4.0347 -3.9168 -1.3314 29 1 -0.3632 -0.0006 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8896 -0.5143 32 1 4.4054 1.3710 -0.0003 33 1 4.6330 -2.5398 0.4234 34 1 6.1310 0.2144 0.3373 35 1 6.8819 -1.4156 0.7622 36 1 6.2411 -2.3074 -1.5244 37 1 5.4903 -0.6774 -1.9497 38 1 2.5352 -3.1428 0.5180 39 1 0.8408 -2.5976 0.5228 40 1 1.8327 -2.3963 -2.1138 41 1 0.3380 -4.1210 -3.5469 42 1 2.0323 -4.6666 -3.5522 43 1 2.5834 -6.9655 -3.2197 44 1 1.8361 -9.3092 -3.2113 45 1 -0.5550 -9.8548 -3.0150 46 1 -2.2211 -8.0601 -2.8274 47 1 -4.2257 -6.7970 -4.2839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855790495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:08 Heat of formation + Delta-G solvation = 63.553121 kcal Electronic energy + Delta-G solvation = -28792.018294 eV Core-core repulsion = 24941.006393 eV Total energy + Delta-G solvation = -3851.011901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.50279 -40.70609 -39.09616 -37.90906 -35.99720 -35.47936 -33.95632 -33.45630 -31.79501 -31.30556 -28.87837 -27.74222 -27.19596 -26.31318 -23.86498 -23.10663 -22.80585 -22.19051 -21.40193 -20.97360 -20.32633 -19.05474 -18.18280 -17.49926 -17.27525 -16.82158 -16.69126 -16.35581 -16.17158 -16.00354 -15.32673 -15.29958 -15.14533 -14.99796 -14.54157 -14.37829 -14.17805 -13.71267 -13.54667 -13.53328 -13.35511 -13.23608 -12.88257 -12.78147 -12.72653 -12.59170 -12.48114 -12.25645 -12.12362 -11.78941 -11.49975 -11.30270 -11.19928 -11.15678 -11.00562 -10.92352 -10.35564 -10.11174 -9.20573 -9.19984 -9.11937 -8.57716 -6.27328 0.60909 1.02204 1.16213 1.36429 1.47593 1.48469 1.54704 1.64309 1.82925 2.20390 2.46568 2.81078 3.17159 3.38911 3.52145 3.78162 3.89864 4.08329 4.13949 4.20133 4.24296 4.31178 4.35018 4.37620 4.42145 4.44432 4.58208 4.63653 4.67503 4.74305 4.76624 4.83590 4.90202 5.07667 5.08759 5.17579 5.21680 5.37013 5.37728 5.38485 5.40604 5.57272 5.63319 5.79731 5.92063 6.06098 6.18850 6.24034 6.44155 6.59254 6.64407 6.76378 7.01231 7.13819 7.39701 8.38674 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.003344 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.067394 B = 8370.752329 C =10391.002528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.368 5.368 3 N -0.313 5.313 4 C 0.049 3.951 5 C -0.183 4.183 6 C -0.093 4.093 7 C -0.163 4.163 8 C -0.169 4.169 9 C 0.064 3.936 10 C 0.194 3.806 11 N -0.718 5.718 12 C 0.524 3.476 13 O -0.568 6.568 14 C -0.068 4.068 15 C -0.186 4.186 16 C -0.091 4.091 17 C -0.243 4.243 18 C -0.118 4.118 19 C -0.195 4.195 20 C 0.097 3.903 21 C -0.482 4.482 22 H 0.074 0.926 23 C 0.035 3.965 24 N -0.828 5.828 25 Si 0.970 3.030 26 H -0.256 1.256 27 H -0.271 1.271 28 H -0.263 1.263 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.207 0.793 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.411 0.589 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.380 14.993 4.899 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.151 5.151 3 N -0.134 5.134 4 C -0.136 4.136 5 C -0.195 4.195 6 C -0.113 4.113 7 C -0.200 4.200 8 C -0.207 4.207 9 C -0.064 4.064 10 C 0.069 3.931 11 N -0.373 5.373 12 C 0.312 3.688 13 O -0.446 6.446 14 C -0.108 4.108 15 C -0.188 4.188 16 C -0.109 4.109 17 C -0.262 4.262 18 C -0.136 4.136 19 C -0.214 4.214 20 C 0.095 3.905 21 C -0.511 4.511 22 H 0.092 0.908 23 C -0.179 4.179 24 N -0.454 5.454 25 Si 0.791 3.209 26 H -0.180 1.180 27 H -0.196 1.196 28 H -0.187 1.187 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.223 0.777 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.247 0.753 41 H 0.115 0.885 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.122 0.878 46 H 0.114 0.886 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.031 15.372 5.442 19.687 hybrid contribution -0.524 -0.425 -0.088 0.681 sum 10.507 14.946 5.354 19.038 Atomic orbital electron populations 1.22112 0.72919 1.05411 1.04581 1.48607 1.07319 1.02894 1.56293 1.77342 1.02431 1.08633 1.25015 1.24101 0.95451 0.94504 0.99574 1.19266 0.92557 0.93512 1.14146 1.20210 0.87617 0.98411 1.05021 1.23062 0.96275 1.01324 0.99306 1.23027 1.02290 1.03542 0.91795 1.20631 0.91343 0.89593 1.04798 1.19532 1.01552 0.87240 0.84805 1.45883 1.70109 1.13197 1.08072 1.21078 0.74718 0.80900 0.92107 1.90684 1.50383 1.56213 1.47328 1.20264 1.03289 0.94630 0.92596 1.19523 0.93388 0.93780 1.12116 1.20742 0.97968 0.92807 0.99361 1.20714 0.95014 0.96240 1.14214 1.20947 0.94069 0.97794 1.00836 1.21310 0.98317 0.93507 1.08297 1.17724 0.92154 0.92777 0.87871 1.19617 0.94282 0.99518 1.37724 0.90838 1.26677 1.01705 0.97215 0.92286 1.69886 1.21999 1.28556 1.24977 0.85389 0.76952 0.78800 0.79753 1.18027 1.19600 1.18749 0.89450 0.87952 0.89209 0.77653 0.88053 0.87647 0.87759 0.88305 0.88702 0.89398 0.91399 0.75309 0.88503 0.86960 0.86482 0.86782 0.87848 0.88620 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 11.09 127.77 1.42 3.00 16 2 N -0.37 -8.21 4.01 -356.04 -1.43 -9.64 16 3 N -0.31 -7.32 12.58 -57.03 -0.72 -8.04 16 4 C 0.05 0.94 11.35 85.24 0.97 1.91 16 5 C -0.18 -3.69 5.76 -20.14 -0.12 -3.80 16 6 C -0.09 -1.62 5.95 -11.54 -0.07 -1.68 16 7 C -0.16 -2.07 10.02 30.60 0.31 -1.77 16 8 C -0.17 -2.46 10.23 30.60 0.31 -2.14 16 9 C 0.06 1.43 6.30 41.41 0.26 1.69 16 10 C 0.19 4.81 5.47 85.63 0.47 5.28 16 11 N -0.72 -18.97 5.55 -466.78 -2.59 -21.56 16 12 C 0.52 18.93 7.44 87.66 0.65 19.58 16 13 O -0.57 -26.20 16.03 -3.04 -0.05 -26.25 16 14 C -0.07 -2.50 5.18 29.10 0.15 -2.35 16 15 C -0.19 -8.74 4.43 -19.40 -0.09 -8.83 16 16 C -0.09 -4.00 9.66 22.22 0.21 -3.79 16 17 C -0.24 -10.95 10.05 22.46 0.23 -10.72 16 18 C -0.12 -5.80 10.02 22.22 0.22 -5.58 16 19 C -0.19 -10.72 8.69 22.73 0.20 -10.52 16 20 C 0.10 5.23 5.56 -21.29 -0.12 5.11 16 21 C -0.48 -25.42 8.14 23.46 0.19 -25.23 16 22 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16 23 C 0.04 1.78 5.16 85.26 0.44 2.22 16 24 N -0.83 -43.58 10.96 21.83 0.24 -43.34 16 25 Si 0.97 38.11 29.59 68.60 2.03 40.14 16 26 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 27 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 28 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.62 7.67 -2.39 -0.02 1.60 16 32 H 0.21 2.63 7.19 -2.91 -0.02 2.61 16 33 H 0.10 1.92 7.41 -2.39 -0.02 1.90 16 34 H 0.11 1.09 6.97 -2.39 -0.02 1.07 16 35 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 2.25 7.32 -2.38 -0.02 2.23 16 39 H 0.07 1.81 7.73 -2.39 -0.02 1.79 16 40 H 0.41 8.94 8.46 -92.71 -0.78 8.15 16 41 H 0.10 3.53 7.08 -2.39 -0.02 3.51 16 42 H 0.11 3.25 8.05 -2.39 -0.02 3.23 16 43 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 44 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 45 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 46 H 0.10 5.52 6.20 -2.91 -0.02 5.50 16 47 H 0.28 13.65 8.30 -92.71 -0.77 12.88 16 Total: -1.00 -69.53 394.51 3.34 -66.19 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: 0.22 Total: 40.11 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 5.64 Total: -37.62 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -4.50 Total: -82.58 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.25 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -69.53 3.34 -66.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855790495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.747 kcal (2) G-P(sol) polarization free energy of solvation -69.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds