Wall clock time and date at job start Sat Apr 11 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46893 * 2 1 4 4 C 1.35301 * 126.47485 * 264.98010 * 3 2 1 5 5 N 1.30761 * 108.77185 * 180.10647 * 4 3 2 6 6 C 1.33480 * 109.09876 * 0.02933 * 5 4 3 7 7 C 1.35039 * 108.12825 * 359.85939 * 6 5 4 8 8 C 1.50615 * 124.84737 * 180.23049 * 7 6 5 9 9 C 1.53419 * 108.80448 * 342.34511 * 8 7 6 10 10 N 1.47054 * 109.08733 * 45.06535 * 9 8 7 11 11 C 1.34784 * 120.80694 * 115.68170 * 10 9 8 12 12 O 1.21280 * 119.99871 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99906 * 180.02562 * 11 10 9 14 14 C 1.50700 * 109.46813 * 180.02562 * 13 11 10 15 15 C 1.37637 * 120.13088 * 265.25798 * 14 13 11 16 16 C 1.38616 * 120.24858 * 180.27514 * 15 14 13 17 17 C 1.38655 * 120.50129 * 359.76889 * 16 15 14 18 18 C 1.37598 * 120.24576 * 359.95079 * 17 16 15 19 19 C 1.40702 * 120.12495 * 85.00356 * 14 13 11 20 20 C 1.41393 * 120.24620 * 359.97406 * 19 14 13 21 21 H 1.08005 * 119.99472 * 29.06445 * 20 19 14 22 22 C 1.39942 * 120.00230 * 209.06451 * 20 19 14 23 23 N 1.30819 * 120.00015 * 197.09705 * 22 20 19 24 24 Si 1.86807 * 119.99804 * 17.09606 * 22 20 19 25 25 H 1.48494 * 109.46958 * 270.00071 * 24 22 20 26 26 H 1.48490 * 109.47075 * 29.99970 * 24 22 20 27 27 H 1.48498 * 109.46661 * 150.00281 * 24 22 20 28 28 C 1.47404 * 118.38684 * 295.95934 * 10 9 8 29 29 H 1.08998 * 109.47525 * 59.99735 * 1 2 3 30 30 H 1.09005 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47241 * 299.99485 * 1 2 3 32 32 H 1.08994 * 109.47065 * 240.00009 * 2 1 3 33 33 H 1.08999 * 109.47176 * 119.99853 * 2 1 3 34 34 H 1.07997 * 125.61147 * 0.10104 * 4 3 2 35 35 H 1.09005 * 109.58626 * 222.55262 * 8 7 6 36 36 H 1.08994 * 109.69790 * 102.21148 * 8 7 6 37 37 H 1.08996 * 109.53546 * 285.18818 * 9 8 7 38 38 H 1.08997 * 109.53840 * 164.95316 * 9 8 7 39 39 H 1.08999 * 109.47299 * 60.00523 * 13 11 10 40 40 H 1.08998 * 109.47401 * 299.99992 * 13 11 10 41 41 H 1.08002 * 119.87427 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.74518 * 179.74349 * 16 15 14 43 43 H 1.08002 * 119.87493 * 179.97438 * 17 16 15 44 44 H 1.08001 * 120.12276 * 180.02562 * 18 17 16 45 45 H 0.96999 * 120.00397 * 355.46471 * 23 22 20 46 46 H 1.09001 * 109.89695 * 163.46131 * 28 10 9 47 47 H 1.09003 * 109.88903 * 284.57865 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3761 2.1078 -1.0838 5 7 2.7607 3.2931 -0.6875 6 6 2.6635 3.3620 0.6420 7 6 2.1982 2.1765 1.0912 8 6 1.9417 1.8451 2.5378 9 6 2.6877 2.8572 3.4169 10 7 2.4710 4.2100 2.8824 11 6 1.8064 5.1374 3.6000 12 8 1.3792 4.8608 4.7008 13 6 1.5941 6.5180 3.0343 14 6 0.8305 7.3557 4.0274 15 6 -0.5388 7.4600 3.9349 16 6 -1.2430 8.2345 4.8436 17 6 -0.5792 8.9083 5.8574 18 6 0.7887 8.8138 5.9724 19 6 1.5141 8.0300 5.0559 20 6 2.9200 7.9255 5.1643 21 1 3.5188 7.7595 4.2809 22 6 3.5355 8.0372 6.4161 23 7 4.8192 8.2762 6.4949 24 14 2.5239 7.8449 7.9748 25 1 1.9994 9.1703 8.3911 26 1 1.3893 6.9221 7.7178 27 1 3.3789 7.2896 9.0544 28 6 2.9928 4.5252 1.5404 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3487 1.7652 -2.1076 35 1 2.3031 0.8392 2.7519 36 1 0.8727 1.9005 2.7435 37 1 3.7535 2.6294 3.4108 38 1 2.3082 2.8033 4.4372 39 1 1.0271 6.4472 2.1062 40 1 2.5603 6.9817 2.8354 41 1 -1.0661 6.9397 3.1490 42 1 -2.3169 8.3139 4.7610 43 1 -1.1379 9.5092 6.5596 44 1 1.3038 9.3392 6.7631 45 1 5.3566 8.3107 5.6880 46 1 2.5196 5.4311 1.1617 47 1 4.0734 4.6609 1.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886616845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:17 Heat of formation + Delta-G solvation = 45.053574 kcal Electronic energy + Delta-G solvation = -29509.453714 eV Core-core repulsion = 25657.639612 eV Total energy + Delta-G solvation = -3851.814102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48021 -39.47407 -37.70252 -36.05593 -35.28396 -33.59027 -32.55852 -31.44795 -30.37801 -30.07983 -29.47981 -27.05782 -25.43985 -24.51010 -23.99688 -23.29992 -21.33440 -20.86613 -20.40282 -19.47042 -18.19903 -17.94667 -17.30709 -16.46229 -15.94480 -15.75687 -15.26616 -15.13289 -14.91215 -14.41991 -14.20337 -14.06150 -13.79493 -13.70293 -13.40555 -13.22753 -12.98356 -12.71363 -12.64578 -12.41587 -12.19839 -12.02952 -11.94717 -11.83672 -11.75406 -11.32728 -11.17106 -11.15053 -10.71971 -10.22589 -10.08191 -10.03121 -9.73858 -9.63395 -9.19527 -9.15410 -8.89459 -8.43390 -8.24839 -7.58489 -7.51398 -7.10722 -4.42090 1.83533 2.49118 2.64836 2.82470 2.96796 3.28689 3.30792 3.33639 3.50167 3.72305 4.16072 4.17389 4.32352 4.43909 4.49067 4.66801 4.68535 4.80515 4.97585 5.07090 5.11167 5.15541 5.24724 5.36742 5.48347 5.56591 5.58182 5.62452 5.77313 5.82187 5.88041 5.96598 6.04417 6.14618 6.19982 6.27382 6.30577 6.55349 6.60380 6.75417 6.82603 7.02332 7.13874 7.42956 7.58917 7.73371 7.76397 7.82033 7.93053 7.96180 8.09200 8.48553 8.67960 8.82218 8.89214 10.15076 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.003190 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.047641 B = 8775.014227 C = 9297.053789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.452 5.452 4 C 0.172 3.828 5 N -0.477 5.477 6 C -0.011 4.011 7 C -0.013 4.013 8 C -0.056 4.056 9 C 0.119 3.881 10 N -0.625 5.625 11 C 0.529 3.471 12 O -0.515 6.515 13 C -0.070 4.070 14 C -0.170 4.170 15 C -0.068 4.068 16 C -0.246 4.246 17 C -0.076 4.076 18 C -0.245 4.245 19 C 0.116 3.884 20 C -0.512 4.512 21 H 0.075 0.925 22 C 0.047 3.953 23 N -0.824 5.824 24 Si 1.070 2.930 25 H -0.280 1.280 26 H -0.258 1.258 27 H -0.294 1.294 28 C 0.199 3.801 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.204 0.796 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.283 0.717 46 H 0.099 0.901 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 -17.025 -12.936 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.135 5.135 4 C -0.109 4.109 5 N -0.195 5.195 6 C -0.142 4.142 7 C -0.128 4.128 8 C -0.096 4.096 9 C -0.005 4.005 10 N -0.362 5.362 11 C 0.318 3.682 12 O -0.388 6.388 13 C -0.110 4.110 14 C -0.172 4.172 15 C -0.086 4.086 16 C -0.265 4.265 17 C -0.094 4.094 18 C -0.264 4.264 19 C 0.113 3.887 20 C -0.541 4.541 21 H 0.093 0.907 22 C -0.171 4.171 23 N -0.447 5.447 24 Si 0.897 3.103 25 H -0.207 1.207 26 H -0.182 1.182 27 H -0.221 1.221 28 C 0.075 3.925 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.221 0.779 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.094 0.906 46 H 0.117 0.883 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.980 -16.596 -11.210 20.419 hybrid contribution -0.217 -0.905 -1.633 1.880 sum -4.197 -17.501 -12.844 22.110 Atomic orbital electron populations 1.22157 0.93952 1.03178 1.03503 1.21838 0.95799 0.79969 1.04541 1.45243 1.48802 1.12459 1.06981 1.24948 1.04305 0.88217 0.93400 1.69922 1.20231 1.18379 1.10994 1.20596 1.07078 0.95686 0.90837 1.20836 1.08945 0.92765 0.90289 1.20483 1.01899 0.99755 0.87416 1.21418 0.99584 0.81070 0.98426 1.48247 1.58440 1.12226 1.17283 1.20990 0.75928 0.86293 0.84962 1.90667 1.48362 1.80124 1.19650 1.20309 1.01918 0.91084 0.97662 1.19035 0.92470 1.03838 1.01842 1.20417 0.93416 0.97350 0.97440 1.20313 0.97464 1.07725 1.00982 1.20596 0.94336 0.97826 0.96692 1.21118 0.94143 1.06422 1.04700 1.17505 0.93358 0.87933 0.89946 1.20532 0.91949 1.45606 0.95995 0.90685 1.27140 0.96873 0.89664 1.03448 1.70561 1.07627 1.31830 1.34672 0.83642 0.75287 0.78078 0.73244 1.20697 1.18218 1.22124 1.19718 0.99290 0.94188 0.79323 0.91731 0.90482 0.91667 0.88725 0.89194 0.77913 0.90311 0.90192 0.91229 0.87921 0.90440 0.88754 0.89300 0.89083 0.88932 0.87808 0.90581 0.88258 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16 2 C 0.10 0.56 6.71 -4.04 -0.03 0.53 16 3 N -0.45 -4.35 2.74 -113.96 -0.31 -4.66 16 4 C 0.17 1.79 12.57 -89.92 -1.13 0.66 16 5 N -0.48 -6.67 11.25 -10.84 -0.12 -6.79 16 6 C -0.01 -0.16 7.06 -83.05 -0.59 -0.75 16 7 C -0.01 -0.16 6.77 -81.82 -0.55 -0.71 16 8 C -0.06 -0.62 6.19 -27.71 -0.17 -0.80 16 9 C 0.12 1.64 6.39 -3.52 -0.02 1.62 16 10 N -0.63 -10.27 2.95 -173.66 -0.51 -10.78 16 11 C 0.53 10.81 7.70 -10.98 -0.08 10.72 16 12 O -0.51 -12.55 15.46 5.56 0.09 -12.46 16 13 C -0.07 -1.41 3.77 -29.03 -0.11 -1.52 16 14 C -0.17 -4.04 4.43 -103.91 -0.46 -4.50 16 15 C -0.07 -1.52 9.66 -39.66 -0.38 -1.90 16 16 C -0.25 -5.42 10.05 -39.29 -0.39 -5.81 16 17 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 18 C -0.24 -6.21 7.26 -38.87 -0.28 -6.49 16 19 C 0.12 3.03 5.13 -106.82 -0.55 2.48 16 20 C -0.51 -13.91 8.80 -37.74 -0.33 -14.24 16 21 H 0.08 2.04 6.60 -52.48 -0.35 1.70 16 22 C 0.05 1.29 5.42 -17.35 -0.09 1.20 16 23 N -0.82 -22.79 13.65 55.55 0.76 -22.03 16 24 Si 1.07 26.30 24.90 -169.99 -4.23 22.07 16 25 H -0.28 -6.46 6.45 56.52 0.36 -6.10 16 26 H -0.26 -6.59 7.01 56.52 0.40 -6.19 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.20 2.90 6.61 -4.74 -0.03 2.87 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.31 8.13 -51.93 -0.42 -0.12 16 33 H 0.09 0.43 7.86 -51.93 -0.41 0.02 16 34 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.56 7.00 -51.93 -0.36 1.20 16 39 H 0.08 1.34 7.46 -51.93 -0.39 0.95 16 40 H 0.09 1.89 6.48 -51.93 -0.34 1.55 16 41 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.10 2.61 4.43 -52.49 -0.23 2.38 16 45 H 0.28 7.57 8.73 -40.82 -0.36 7.22 16 46 H 0.10 1.42 6.20 -51.93 -0.32 1.10 16 47 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -33.98 378.19 -10.52 -44.49 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.65 Total: 3.78 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -5.23 Total: -19.32 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.19 Total: -44.26 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -4.23 Total: 22.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.98 -10.52 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886616845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.548 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds