Wall clock time and date at job start Sat Apr 11 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46893 * 2 1 4 4 C 1.35301 * 126.47485 * 264.98010 * 3 2 1 5 5 N 1.30761 * 108.77185 * 180.10647 * 4 3 2 6 6 C 1.33480 * 109.09876 * 0.02933 * 5 4 3 7 7 C 1.35039 * 108.12825 * 359.85939 * 6 5 4 8 8 C 1.50615 * 124.84737 * 180.23049 * 7 6 5 9 9 C 1.53419 * 108.80448 * 342.34511 * 8 7 6 10 10 N 1.47054 * 109.08733 * 45.06535 * 9 8 7 11 11 C 1.34784 * 120.80694 * 115.68170 * 10 9 8 12 12 O 1.21280 * 119.99871 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99906 * 180.02562 * 11 10 9 14 14 C 1.50700 * 109.46813 * 180.02562 * 13 11 10 15 15 C 1.37637 * 120.13088 * 265.25798 * 14 13 11 16 16 C 1.38616 * 120.24858 * 180.27514 * 15 14 13 17 17 C 1.38655 * 120.50129 * 359.76889 * 16 15 14 18 18 C 1.37598 * 120.24576 * 359.95079 * 17 16 15 19 19 C 1.40702 * 120.12495 * 85.00356 * 14 13 11 20 20 C 1.41393 * 120.24620 * 359.97406 * 19 14 13 21 21 H 1.08005 * 119.99472 * 29.06445 * 20 19 14 22 22 C 1.39942 * 120.00230 * 209.06451 * 20 19 14 23 23 N 1.30819 * 120.00015 * 197.09705 * 22 20 19 24 24 Si 1.86807 * 119.99804 * 17.09606 * 22 20 19 25 25 H 1.48494 * 109.46958 * 270.00071 * 24 22 20 26 26 H 1.48490 * 109.47075 * 29.99970 * 24 22 20 27 27 H 1.48498 * 109.46661 * 150.00281 * 24 22 20 28 28 C 1.47404 * 118.38684 * 295.95934 * 10 9 8 29 29 H 1.08998 * 109.47525 * 59.99735 * 1 2 3 30 30 H 1.09005 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47241 * 299.99485 * 1 2 3 32 32 H 1.08994 * 109.47065 * 240.00009 * 2 1 3 33 33 H 1.08999 * 109.47176 * 119.99853 * 2 1 3 34 34 H 1.07997 * 125.61147 * 0.10104 * 4 3 2 35 35 H 1.09005 * 109.58626 * 222.55262 * 8 7 6 36 36 H 1.08994 * 109.69790 * 102.21148 * 8 7 6 37 37 H 1.08996 * 109.53546 * 285.18818 * 9 8 7 38 38 H 1.08997 * 109.53840 * 164.95316 * 9 8 7 39 39 H 1.08999 * 109.47299 * 60.00523 * 13 11 10 40 40 H 1.08998 * 109.47401 * 299.99992 * 13 11 10 41 41 H 1.08002 * 119.87427 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.74518 * 179.74349 * 16 15 14 43 43 H 1.08002 * 119.87493 * 179.97438 * 17 16 15 44 44 H 1.08001 * 120.12276 * 180.02562 * 18 17 16 45 45 H 0.96999 * 120.00397 * 355.46471 * 23 22 20 46 46 H 1.09001 * 109.89695 * 163.46131 * 28 10 9 47 47 H 1.09003 * 109.88903 * 284.57865 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3761 2.1078 -1.0838 5 7 2.7607 3.2931 -0.6875 6 6 2.6635 3.3620 0.6420 7 6 2.1982 2.1765 1.0912 8 6 1.9417 1.8451 2.5378 9 6 2.6877 2.8572 3.4169 10 7 2.4710 4.2100 2.8824 11 6 1.8064 5.1374 3.6000 12 8 1.3792 4.8608 4.7008 13 6 1.5941 6.5180 3.0343 14 6 0.8305 7.3557 4.0274 15 6 -0.5388 7.4600 3.9349 16 6 -1.2430 8.2345 4.8436 17 6 -0.5792 8.9083 5.8574 18 6 0.7887 8.8138 5.9724 19 6 1.5141 8.0300 5.0559 20 6 2.9200 7.9255 5.1643 21 1 3.5188 7.7595 4.2809 22 6 3.5355 8.0372 6.4161 23 7 4.8192 8.2762 6.4949 24 14 2.5239 7.8449 7.9748 25 1 1.9994 9.1703 8.3911 26 1 1.3893 6.9221 7.7178 27 1 3.3789 7.2896 9.0544 28 6 2.9928 4.5252 1.5404 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3487 1.7652 -2.1076 35 1 2.3031 0.8392 2.7519 36 1 0.8727 1.9005 2.7435 37 1 3.7535 2.6294 3.4108 38 1 2.3082 2.8033 4.4372 39 1 1.0271 6.4472 2.1062 40 1 2.5603 6.9817 2.8354 41 1 -1.0661 6.9397 3.1490 42 1 -2.3169 8.3139 4.7610 43 1 -1.1379 9.5092 6.5596 44 1 1.3038 9.3392 6.7631 45 1 5.3566 8.3107 5.6880 46 1 2.5196 5.4311 1.1617 47 1 4.0734 4.6609 1.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886616845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:16 Heat of formation + Delta-G solvation = 26.247379 kcal Electronic energy + Delta-G solvation = -29510.269212 eV Core-core repulsion = 25657.639612 eV Total energy + Delta-G solvation = -3852.629600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.34238 -41.01222 -39.45345 -37.38335 -36.02251 -35.58006 -33.96258 -32.82508 -31.99298 -31.17435 -30.49280 -28.69454 -26.67739 -26.22875 -24.63704 -24.44433 -23.18712 -21.93025 -21.61427 -20.93329 -20.02657 -19.36800 -18.24719 -17.76027 -17.31879 -16.99402 -16.61695 -16.56136 -16.07158 -15.78279 -15.54343 -15.46823 -15.07995 -14.94827 -14.52290 -14.44691 -14.34722 -14.01050 -13.88731 -13.69618 -13.55996 -13.44048 -13.13115 -13.04754 -12.87236 -12.72489 -12.58872 -12.41189 -12.19799 -12.12989 -11.92411 -11.57732 -11.12812 -10.96977 -10.85040 -10.81750 -10.53674 -9.77601 -9.55094 -9.34141 -9.17692 -9.13593 -6.46947 0.81802 0.91496 0.98895 1.33374 1.53401 1.69675 1.75377 1.82867 1.96027 2.06829 2.18390 2.71418 3.37607 3.50163 3.62987 3.74492 3.82998 3.93716 4.05211 4.11520 4.17609 4.20153 4.25194 4.32987 4.36945 4.43774 4.47372 4.51369 4.54320 4.62757 4.67171 4.74684 4.80230 4.86931 4.88683 4.94865 4.98741 5.18872 5.25651 5.32902 5.48836 5.52221 5.61667 5.64413 5.84173 5.90382 6.03715 6.20187 6.27271 6.36532 6.50057 6.74992 6.90282 7.06883 7.26854 8.08625 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.003190 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.047641 B = 8775.014227 C = 9297.053789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.446 5.446 4 C 0.183 3.817 5 N -0.518 5.518 6 C -0.041 4.041 7 C -0.017 4.017 8 C -0.043 4.043 9 C 0.112 3.888 10 N -0.617 5.617 11 C 0.527 3.473 12 O -0.564 6.564 13 C -0.069 4.069 14 C -0.175 4.175 15 C -0.080 4.080 16 C -0.230 4.230 17 C -0.086 4.086 18 C -0.264 4.264 19 C 0.087 3.913 20 C -0.533 4.533 21 H 0.057 0.943 22 C 0.014 3.986 23 N -0.852 5.852 24 Si 1.099 2.901 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.286 1.286 28 C 0.199 3.801 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.043 0.957 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.243 0.757 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.100 0.900 45 H 0.277 0.723 46 H 0.097 0.903 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.453 -19.205 -14.626 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.127 5.127 4 C -0.098 4.098 5 N -0.237 5.237 6 C -0.171 4.171 7 C -0.134 4.134 8 C -0.082 4.082 9 C -0.011 4.011 10 N -0.352 5.352 11 C 0.317 3.683 12 O -0.441 6.441 13 C -0.108 4.108 14 C -0.177 4.177 15 C -0.098 4.098 16 C -0.249 4.249 17 C -0.104 4.104 18 C -0.283 4.283 19 C 0.085 3.915 20 C -0.563 4.563 21 H 0.075 0.925 22 C -0.199 4.199 23 N -0.477 5.477 24 Si 0.923 3.077 25 H -0.183 1.183 26 H -0.202 1.202 27 H -0.213 1.213 28 C 0.075 3.925 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.144 0.856 33 H 0.120 0.880 34 H 0.259 0.741 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.117 0.883 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.256 -18.800 -12.940 23.665 hybrid contribution 0.294 -0.329 -1.329 1.401 sum -5.962 -19.130 -14.270 24.599 Atomic orbital electron populations 1.22133 0.93853 1.04264 1.02137 1.22221 0.95785 0.77833 1.06744 1.45475 1.47802 1.13636 1.05814 1.25709 1.01986 0.87194 0.94945 1.69858 1.22215 1.20698 1.10907 1.20478 1.09229 0.96090 0.91282 1.20866 1.08640 0.92727 0.91211 1.20352 1.01163 1.00320 0.86374 1.21613 1.00812 0.80447 0.98231 1.48199 1.56757 1.12642 1.17609 1.20926 0.76005 0.86824 0.84516 1.90637 1.50917 1.81030 1.21548 1.20302 1.01702 0.90742 0.98060 1.19471 0.93677 1.03170 1.01363 1.20849 0.92979 0.97508 0.98475 1.20862 0.99427 1.05286 0.99344 1.21005 0.93571 0.98189 0.97663 1.21302 0.95555 1.06771 1.04706 1.17766 0.93219 0.89050 0.91491 1.20476 0.92712 1.47591 0.95518 0.92510 1.27892 0.97230 0.89452 1.05276 1.70605 1.08000 1.34899 1.34237 0.83249 0.74005 0.78652 0.71793 1.18281 1.20194 1.21293 1.19721 0.99193 0.94996 0.78567 0.92281 0.88187 0.93796 0.85619 0.88001 0.74060 0.86938 0.90694 0.89963 0.89617 0.87503 0.89439 0.86262 0.85341 0.85597 0.88280 0.91276 0.88525 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.24 71.98 0.74 -0.53 16 2 C 0.09 0.67 6.71 86.38 0.58 1.25 16 3 N -0.45 -7.27 2.74 -514.47 -1.41 -8.68 16 4 C 0.18 3.30 12.57 180.10 2.26 5.56 16 5 N -0.52 -13.84 11.25 -188.20 -2.12 -15.96 16 6 C -0.04 -1.13 7.06 41.55 0.29 -0.84 16 7 C -0.02 -0.39 6.77 41.11 0.28 -0.12 16 8 C -0.04 -0.89 6.19 29.96 0.19 -0.71 16 9 C 0.11 3.11 6.39 86.41 0.55 3.66 16 10 N -0.62 -20.71 2.95 -821.73 -2.42 -23.14 16 11 C 0.53 22.15 7.70 87.66 0.67 22.83 16 12 O -0.56 -28.38 15.46 -3.03 -0.05 -28.43 16 13 C -0.07 -2.81 3.77 29.10 0.11 -2.70 16 14 C -0.18 -8.33 4.43 -19.40 -0.09 -8.41 16 15 C -0.08 -3.40 9.66 22.22 0.21 -3.19 16 16 C -0.23 -9.41 10.05 22.46 0.23 -9.19 16 17 C -0.09 -3.76 10.02 22.22 0.22 -3.54 16 18 C -0.26 -13.37 7.26 22.73 0.16 -13.21 16 19 C 0.09 4.67 5.13 -21.29 -0.11 4.56 16 20 C -0.53 -30.39 8.80 23.46 0.21 -30.18 16 21 H 0.06 3.32 6.60 -2.91 -0.02 3.30 16 22 C 0.01 0.82 5.42 85.26 0.46 1.28 16 23 N -0.85 -49.37 13.65 21.83 0.30 -49.07 16 24 Si 1.10 54.58 24.90 68.60 1.71 56.29 16 25 H -0.26 -11.64 6.45 99.48 0.64 -11.00 16 26 H -0.28 -14.42 7.01 99.48 0.70 -13.72 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 C 0.20 5.90 6.61 85.44 0.56 6.47 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.13 0.18 8.13 -2.39 -0.02 0.16 16 33 H 0.10 0.54 7.86 -2.39 -0.02 0.52 16 34 H 0.24 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.11 1.57 7.91 -2.38 -0.02 1.55 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.09 2.70 7.00 -2.39 -0.02 2.68 16 39 H 0.11 3.63 7.46 -2.39 -0.02 3.61 16 40 H 0.09 3.68 6.48 -2.39 -0.02 3.67 16 41 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 43 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 44 H 0.10 5.01 4.43 -2.91 -0.01 5.00 16 45 H 0.28 15.73 8.73 -92.71 -0.81 14.92 16 46 H 0.10 2.84 6.20 -2.39 -0.01 2.82 16 47 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -77.33 378.19 4.42 -72.91 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.87 Total: 23.07 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 7.54 Total: -27.01 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -5.65 Total: -96.84 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 14 Polarization: 54.58 SS G_CDS: 1.71 Total: 56.29 kcal Total: -77.33 4.42 -72.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886616845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.161 kcal (2) G-P(sol) polarization free energy of solvation -77.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds