Wall clock time and date at job start Sat Apr 11 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 120.00404 * 2 1 4 4 C 1.39168 * 119.99724 * 180.02562 * 2 1 3 5 5 C 1.39491 * 120.86662 * 354.49653 * 4 2 1 6 6 C 1.37871 * 119.07024 * 180.02562 * 5 4 2 7 7 N 1.32012 * 120.84556 * 359.97438 * 6 5 4 8 8 C 1.31987 * 121.90838 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.58183 * 179.97438 * 8 7 6 10 10 N 1.46492 * 109.47276 * 275.00290 * 9 8 7 11 11 C 1.34777 * 119.99971 * 180.27793 * 10 9 8 12 12 O 1.21277 * 120.00049 * 359.71361 * 11 10 9 13 13 C 1.50709 * 119.99898 * 179.72441 * 11 10 9 14 14 C 1.50704 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.37631 * 120.12860 * 264.99651 * 14 13 11 16 16 C 1.38615 * 120.24779 * 179.97438 * 15 14 13 17 17 C 1.38659 * 120.50136 * 0.02620 * 16 15 14 18 18 C 1.37595 * 120.24668 * 0.02562 * 17 16 15 19 19 C 1.40700 * 120.12278 * 84.72357 * 14 13 11 20 20 C 1.41397 * 120.24711 * 359.97438 * 19 14 13 21 21 H 1.08002 * 119.99614 * 330.52444 * 20 19 14 22 22 C 1.39945 * 119.99890 * 150.52426 * 20 19 14 23 23 N 1.30822 * 120.00275 * 350.26216 * 22 20 19 24 24 Si 1.86799 * 119.99763 * 170.26027 * 22 20 19 25 25 H 1.48501 * 109.47065 * 60.00047 * 24 22 20 26 26 H 1.48498 * 109.47436 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47493 * 300.00399 * 24 22 20 28 28 C 1.37918 * 120.83805 * 0.27432 * 8 7 6 29 29 H 1.08999 * 109.47186 * 185.08899 * 1 2 3 30 30 H 1.09000 * 109.46652 * 305.09081 * 1 2 3 31 31 H 1.09001 * 109.46739 * 65.09057 * 1 2 3 32 32 H 1.09005 * 109.47379 * 270.00501 * 3 2 1 33 33 H 1.09002 * 109.46750 * 30.00013 * 3 2 1 34 34 H 1.08998 * 109.47769 * 150.00254 * 3 2 1 35 35 H 1.07999 * 120.46692 * 0.03068 * 5 4 2 36 36 H 1.08003 * 119.58501 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47075 * 154.99823 * 9 8 7 38 38 H 1.09006 * 109.46975 * 35.00133 * 9 8 7 39 39 H 0.97006 * 120.00019 * 359.97438 * 10 9 8 40 40 H 1.09000 * 109.46851 * 299.99663 * 13 11 10 41 41 H 1.08998 * 109.47020 * 59.99377 * 13 11 10 42 42 H 1.07994 * 119.87868 * 0.02562 * 15 14 13 43 43 H 1.08000 * 119.74651 * 179.97438 * 16 15 14 44 44 H 1.08002 * 119.87724 * 179.97438 * 17 16 15 45 45 H 1.08004 * 120.12954 * 179.97438 * 18 17 16 46 46 H 0.96997 * 120.00067 * 179.97438 * 23 22 20 47 47 H 1.08004 * 120.46100 * 179.72897 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1608 -1.2053 -0.0005 5 6 1.4864 -2.4210 0.1137 6 6 2.2127 -3.5929 0.1096 7 7 3.5280 -3.5736 -0.0011 8 6 4.2024 -2.4444 -0.1112 9 6 5.7039 -2.4836 -0.2340 10 7 6.3015 -2.5508 1.1017 11 6 7.6417 -2.5893 1.2392 12 8 8.3527 -2.5735 0.2568 13 6 8.2567 -2.6522 2.6136 14 6 9.7583 -2.6864 2.4909 15 6 10.4248 -3.8906 2.4974 16 6 11.8058 -3.9250 2.3842 17 6 12.5316 -2.7497 2.2638 18 6 11.8864 -1.5344 2.2560 19 6 10.4839 -1.4877 2.3635 20 6 9.8095 -0.2450 2.3493 21 1 8.8015 -0.1820 1.9665 22 6 10.4480 0.9032 2.8313 23 7 11.5868 0.8004 3.4668 24 14 9.6742 2.5827 2.5670 25 1 8.3369 2.6186 3.2116 26 1 10.5419 3.6276 3.1674 27 1 9.5289 2.8373 1.1112 28 6 3.5510 -1.2288 -0.1092 29 1 -0.3633 -1.0236 0.0912 30 1 -0.3632 0.5908 0.8409 31 1 -0.3633 0.4328 -0.9321 32 1 2.3792 1.5834 -1.0277 33 1 1.6085 2.0283 0.5139 34 1 3.1500 1.1384 0.5138 35 1 0.4105 -2.4439 0.2041 36 1 1.6990 -4.5389 0.1972 37 1 6.0504 -1.5837 -0.7423 38 1 5.9986 -3.3617 -0.8086 39 1 5.7328 -2.5632 1.8875 40 1 7.9584 -1.7736 3.1857 41 1 7.9136 -3.5520 3.1244 42 1 9.8696 -4.8123 2.5903 43 1 12.3206 -4.8744 2.3906 44 1 13.6074 -2.7882 2.1766 45 1 12.4535 -0.6200 2.1626 46 1 12.0296 1.5963 3.8006 47 1 4.1092 -0.3083 -0.1953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927702273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:30 Heat of formation + Delta-G solvation = 8.456983 kcal Electronic energy + Delta-G solvation = -28200.455804 eV Core-core repulsion = 24347.054755 eV Total energy + Delta-G solvation = -3853.401049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45627 -40.63436 -39.10690 -38.00343 -35.81394 -35.44851 -33.52500 -32.51530 -32.12015 -31.30393 -29.66197 -28.72260 -27.32659 -26.61274 -25.94536 -23.64628 -22.78790 -22.21408 -21.67849 -20.93933 -19.05098 -18.56146 -17.80268 -17.69663 -17.32206 -16.98032 -16.29377 -16.27457 -16.16512 -16.05584 -15.49825 -15.35931 -15.08247 -15.03241 -14.66944 -14.49930 -14.34954 -14.01250 -13.76565 -13.51224 -13.41955 -13.33297 -13.04506 -12.94769 -12.84838 -12.75261 -12.59791 -12.46099 -12.13425 -12.09093 -11.57424 -11.31518 -11.20147 -11.03159 -10.87106 -10.37639 -10.05314 -10.03138 -9.17335 -9.12334 -8.62944 -8.51682 -6.29103 0.11031 0.54661 1.01966 1.16151 1.36733 1.47955 1.54814 1.84565 2.05794 2.22819 2.35368 2.83396 3.00877 3.27094 3.70306 3.77708 3.92180 4.13242 4.17126 4.19788 4.29909 4.41071 4.44231 4.46108 4.49877 4.57852 4.64090 4.69089 4.72136 4.75104 4.81254 4.82562 4.86252 4.88978 5.01694 5.07854 5.08517 5.22973 5.40078 5.47067 5.57199 5.65820 5.80675 6.05991 6.14562 6.19773 6.22807 6.30550 6.45068 6.63140 6.77194 7.02756 7.13470 7.17986 7.42323 8.43771 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.002936 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.534562 B = 9533.170262 C =11580.460833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.630 5.630 3 C 0.083 3.917 4 C 0.242 3.758 5 C -0.245 4.245 6 C 0.132 3.868 7 N -0.541 5.541 8 C 0.144 3.856 9 C 0.177 3.823 10 N -0.716 5.716 11 C 0.520 3.480 12 O -0.572 6.572 13 C -0.068 4.068 14 C -0.183 4.183 15 C -0.095 4.095 16 C -0.238 4.238 17 C -0.120 4.120 18 C -0.188 4.188 19 C 0.094 3.906 20 C -0.483 4.483 21 H 0.070 0.930 22 C 0.032 3.968 23 N -0.836 5.836 24 Si 0.975 3.025 25 H -0.253 1.253 26 H -0.269 1.269 27 H -0.269 1.269 28 C -0.239 4.239 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.163 0.837 36 H 0.181 0.819 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.410 0.590 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.284 0.716 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.775 0.377 -3.316 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.340 5.340 3 C -0.059 4.059 4 C 0.130 3.870 5 C -0.270 4.270 6 C -0.024 4.024 7 N -0.254 5.254 8 C 0.007 3.993 9 C 0.053 3.947 10 N -0.370 5.370 11 C 0.308 3.692 12 O -0.450 6.450 13 C -0.108 4.108 14 C -0.185 4.185 15 C -0.113 4.113 16 C -0.257 4.257 17 C -0.138 4.138 18 C -0.207 4.207 19 C 0.092 3.908 20 C -0.513 4.513 21 H 0.089 0.911 22 C -0.181 4.181 23 N -0.463 5.463 24 Si 0.796 3.204 25 H -0.177 1.177 26 H -0.193 1.193 27 H -0.194 1.194 28 C -0.265 4.265 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.180 0.820 36 H 0.198 0.802 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.246 0.754 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.124 0.876 45 H 0.118 0.882 46 H 0.094 0.906 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.752 -0.046 -3.903 25.058 hybrid contribution -0.321 1.648 0.105 1.682 sum -25.073 1.602 -3.798 25.409 Atomic orbital electron populations 1.21969 0.77297 1.04318 1.02485 1.46551 1.06559 1.02827 1.78056 1.21821 0.97488 0.84573 1.02053 1.18218 0.90919 0.87509 0.90381 1.21985 1.02546 0.91162 1.11272 1.22954 0.88590 0.99046 0.91763 1.67519 1.10502 1.29961 1.17456 1.20614 0.94645 0.88757 0.95279 1.19922 0.87056 1.02300 0.85423 1.45807 1.06074 1.76228 1.08842 1.21135 0.81630 0.74304 0.92117 1.90663 1.62140 1.50222 1.41980 1.20271 0.92621 1.04651 0.93211 1.19593 0.93950 0.93334 1.11652 1.20752 0.94492 0.96389 0.99678 1.20752 0.94302 0.97055 1.13586 1.20971 0.98557 0.93309 1.00983 1.21380 0.95674 0.96479 1.07209 1.17757 0.92146 0.92945 0.87960 1.19588 1.01153 0.92762 1.37802 0.91147 1.26685 0.94840 1.04454 0.92119 1.69865 1.16020 1.32530 1.27860 0.85368 0.79471 0.76320 0.79264 1.17662 1.19294 1.19376 1.21530 0.93727 0.99266 1.11969 0.89294 0.90932 0.91683 0.92642 0.89194 0.91822 0.81952 0.80171 0.90939 0.91532 0.75449 0.88327 0.87101 0.86606 0.86600 0.87598 0.88222 0.90557 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.63 127.77 1.36 1.95 16 2 N -0.63 -8.70 3.39 -746.65 -2.53 -11.23 16 3 C 0.08 1.00 10.15 127.77 1.30 2.29 16 4 C 0.24 4.41 6.56 38.57 0.25 4.66 16 5 C -0.24 -3.74 9.37 22.48 0.21 -3.53 16 6 C 0.13 2.40 11.17 84.58 0.94 3.34 16 7 N -0.54 -13.54 10.27 -184.19 -1.89 -15.43 16 8 C 0.14 3.67 6.14 42.46 0.26 3.93 16 9 C 0.18 5.34 5.98 85.63 0.51 5.85 16 10 N -0.72 -22.52 5.55 -466.80 -2.59 -25.11 16 11 C 0.52 21.11 7.42 87.66 0.65 21.76 16 12 O -0.57 -28.86 16.03 -3.02 -0.05 -28.91 16 13 C -0.07 -2.71 5.19 29.11 0.15 -2.56 16 14 C -0.18 -9.11 4.43 -19.40 -0.09 -9.20 16 15 C -0.10 -4.43 9.66 22.22 0.21 -4.21 16 16 C -0.24 -11.15 10.05 22.46 0.23 -10.92 16 17 C -0.12 -6.06 10.02 22.22 0.22 -5.84 16 18 C -0.19 -10.65 8.66 22.73 0.20 -10.46 16 19 C 0.09 5.29 5.55 -21.29 -0.12 5.17 16 20 C -0.48 -26.55 8.07 23.46 0.19 -26.36 16 21 H 0.07 3.76 6.76 -2.91 -0.02 3.74 16 22 C 0.03 1.66 5.27 85.26 0.45 2.11 16 23 N -0.84 -45.18 10.82 21.83 0.24 -44.94 16 24 Si 0.97 39.34 29.57 68.60 2.03 41.37 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 27 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 28 C -0.24 -5.30 8.83 22.49 0.20 -5.10 16 29 H 0.09 0.46 5.39 -2.39 -0.01 0.45 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.09 0.72 8.07 -2.39 -0.02 0.70 16 34 H 0.06 0.90 6.49 -2.39 -0.02 0.89 16 35 H 0.16 1.41 5.87 -2.91 -0.02 1.40 16 36 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 38 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.41 10.70 8.46 -92.70 -0.78 9.91 16 40 H 0.10 3.88 7.14 -2.39 -0.02 3.86 16 41 H 0.11 3.58 8.05 -2.39 -0.02 3.56 16 42 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 43 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 45 H 0.10 5.90 6.22 -2.91 -0.02 5.88 16 46 H 0.28 14.00 8.30 -92.71 -0.77 13.24 16 47 H 0.13 2.88 6.43 -2.91 -0.02 2.86 16 Total: -1.00 -74.27 390.13 2.55 -71.73 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: 0.22 Total: 39.64 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 7.13 Total: -27.12 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -6.78 Total: -96.71 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.05 Total: -28.91 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -74.27 2.55 -71.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927702273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.182 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds