Wall clock time and date at job start Sat Apr 11 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40077 * 126.03750 * 2 1 4 4 C 1.30839 * 108.20784 * 179.97438 * 3 2 1 5 5 C 1.39867 * 108.19753 * 359.77608 * 4 3 2 6 6 C 1.34946 * 126.03668 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.12685 * 359.97438 * 6 2 1 8 8 H 1.09006 * 109.99889 * 63.90394 * 7 6 2 9 9 C 1.54331 * 109.99187 * 302.86950 * 7 6 2 10 10 C 1.55166 * 103.01716 * 218.66286 * 9 7 6 11 11 C 1.54910 * 101.58114 * 35.30843 * 10 9 7 12 12 N 1.47024 * 109.88259 * 184.99609 * 7 6 2 13 13 C 1.34776 * 125.64826 * 298.39983 * 12 7 6 14 14 O 1.21275 * 120.00350 * 359.71177 * 13 12 7 15 15 C 1.50702 * 119.99743 * 179.71430 * 13 12 7 16 16 C 1.50691 * 109.47147 * 179.97438 * 15 13 12 17 17 C 1.37644 * 120.13017 * 265.30153 * 16 15 13 18 18 C 1.38614 * 120.24887 * 180.32286 * 17 16 15 19 19 C 1.38660 * 120.49992 * 359.67365 * 18 17 16 20 20 C 1.37592 * 120.24946 * 359.97438 * 19 18 17 21 21 C 1.40697 * 120.13051 * 85.00071 * 16 15 13 22 22 C 1.41400 * 120.23779 * 359.97216 * 21 16 15 23 23 H 1.08001 * 120.00164 * 27.58937 * 22 21 16 24 24 C 1.39953 * 119.99698 * 207.57845 * 22 21 16 25 25 N 1.30821 * 119.99662 * 202.20905 * 24 22 21 26 26 Si 1.86793 * 119.99977 * 21.93925 * 24 22 21 27 27 H 1.48504 * 109.46978 * 263.32532 * 26 24 22 28 28 H 1.48495 * 109.47684 * 23.32676 * 26 24 22 29 29 H 1.48496 * 109.47263 * 143.33080 * 26 24 22 30 30 H 1.09000 * 109.46696 * 270.02351 * 1 2 3 31 31 H 1.09000 * 109.47383 * 30.02215 * 1 2 3 32 32 H 1.09003 * 109.47336 * 150.02231 * 1 2 3 33 33 H 1.08000 * 125.89783 * 180.02562 * 4 3 2 34 34 H 1.08004 * 126.03619 * 180.23036 * 5 4 3 35 35 H 1.09004 * 110.85314 * 100.19993 * 9 7 6 36 36 H 1.08997 * 110.66984 * 337.04401 * 9 7 6 37 37 H 1.08996 * 111.00540 * 277.23139 * 10 9 7 38 38 H 1.09004 * 110.99958 * 153.37686 * 10 9 7 39 39 H 1.08997 * 110.36400 * 204.15257 * 11 10 9 40 40 H 1.08996 * 110.45966 * 81.87105 * 11 10 9 41 41 H 1.09005 * 109.47302 * 59.99906 * 15 13 12 42 42 H 1.08995 * 109.47211 * 300.00044 * 15 13 12 43 43 H 1.08001 * 119.87530 * 0.03968 * 17 16 15 44 44 H 1.07998 * 119.75253 * 179.69571 * 18 17 16 45 45 H 1.07996 * 119.87789 * 180.02562 * 19 18 17 46 46 H 1.08000 * 120.13140 * 180.02562 * 20 19 18 47 47 H 0.97006 * 120.00294 * 352.91158 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6665 0.0061 6 6 2.2590 -1.0912 0.0005 7 6 1.7974 -2.5258 0.0017 8 1 1.2539 -2.7433 -0.9179 9 6 0.8869 -2.7861 1.2203 10 6 1.3046 -4.2110 1.6707 11 6 2.8240 -4.1996 1.3689 12 7 2.9554 -3.4236 0.1223 13 6 3.9716 -3.5173 -0.7580 14 8 3.9763 -2.8265 -1.7547 15 6 5.1022 -4.4808 -0.5037 16 6 6.1004 -4.3921 -1.6291 17 6 6.0245 -5.2654 -2.6904 18 6 6.9454 -5.1904 -3.7236 19 6 7.9481 -4.2328 -3.7045 20 6 8.0388 -3.3450 -2.6573 21 6 7.1098 -3.4124 -1.6023 22 6 7.1934 -2.5055 -0.5207 23 1 6.8264 -2.7920 0.4538 24 6 7.7518 -1.2367 -0.7130 25 7 8.2293 -0.5708 0.3069 26 14 7.8223 -0.4972 -2.4268 27 1 9.1608 -0.7477 -3.0194 28 1 6.7790 -1.1221 -3.2790 29 1 7.5834 0.9661 -2.3448 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 4.4054 1.3710 0.0011 34 1 4.4211 -1.2963 0.0114 35 1 -0.1639 -2.7657 0.9310 36 1 1.0825 -2.0596 2.0089 37 1 0.7948 -4.9724 1.0805 38 1 1.1188 -4.3544 2.7351 39 1 3.1894 -5.2161 1.2232 40 1 3.3694 -3.7133 2.1777 41 1 4.7088 -5.4958 -0.4465 42 1 5.5911 -4.2271 0.4369 43 1 5.2472 -6.0148 -2.7158 44 1 6.8814 -5.8828 -4.5500 45 1 8.6601 -4.1832 -4.5151 46 1 8.8203 -2.5996 -2.6446 47 1 8.1049 -0.9085 1.2078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928371809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:34 Heat of formation + Delta-G solvation = 69.322601 kcal Electronic energy + Delta-G solvation = -30640.746885 eV Core-core repulsion = 26789.985167 eV Total energy + Delta-G solvation = -3850.761718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18102 -39.52058 -37.97714 -36.77901 -33.62858 -33.20395 -32.12763 -31.33449 -30.83129 -30.07506 -27.74033 -26.87259 -26.51926 -24.57268 -23.43679 -21.61424 -21.32803 -20.78345 -20.35695 -19.37194 -18.40911 -18.02293 -17.14222 -16.68857 -15.66875 -15.31026 -15.25032 -14.83179 -14.51256 -14.15883 -13.93605 -13.69066 -13.66474 -13.51418 -13.27902 -13.08020 -12.76273 -12.61579 -12.35375 -12.30141 -12.07070 -11.96423 -11.86554 -11.51859 -11.38971 -11.21602 -11.16491 -10.99071 -10.76652 -10.32872 -10.25222 -10.07698 -9.70108 -9.26799 -9.17645 -8.95821 -8.87223 -8.45645 -8.06857 -7.62879 -7.53519 -7.12495 -4.43732 2.14705 2.56988 2.72363 2.81881 3.25628 3.31214 3.33628 3.34186 3.50343 3.73109 4.14057 4.31551 4.39487 4.60732 4.64641 4.67959 4.88780 5.06709 5.11047 5.24452 5.30328 5.38211 5.45978 5.48583 5.55410 5.58958 5.65382 5.72979 5.81598 5.93545 5.96227 6.04593 6.12012 6.23421 6.24879 6.27109 6.51021 6.60542 6.71328 6.81132 7.09306 7.12940 7.31359 7.41381 7.56638 7.72326 7.77027 7.86848 7.91690 8.04286 8.07267 8.46244 8.67202 8.80906 8.86004 10.10427 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.005168 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.092541 B = 5416.633308 C = 6820.040128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.379 5.379 3 N -0.305 5.305 4 C 0.049 3.951 5 C -0.225 4.225 6 C 0.066 3.934 7 C 0.208 3.792 8 H 0.084 0.916 9 C -0.127 4.127 10 C -0.130 4.130 11 C 0.102 3.898 12 N -0.622 5.622 13 C 0.533 3.467 14 O -0.499 6.499 15 C -0.063 4.063 16 C -0.176 4.176 17 C -0.066 4.066 18 C -0.248 4.248 19 C -0.076 4.076 20 C -0.240 4.240 21 C 0.117 3.883 22 C -0.512 4.512 23 H 0.075 0.925 24 C 0.054 3.946 25 N -0.816 5.816 26 Si 1.062 2.938 27 H -0.281 1.281 28 H -0.256 1.256 29 H -0.291 1.291 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.182 0.818 34 H 0.152 0.848 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 -5.321 4.990 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.164 5.164 3 N -0.127 5.127 4 C -0.136 4.136 5 C -0.254 4.254 6 C -0.061 4.061 7 C 0.101 3.899 8 H 0.102 0.898 9 C -0.166 4.166 10 C -0.168 4.168 11 C -0.022 4.022 12 N -0.360 5.360 13 C 0.323 3.677 14 O -0.370 6.370 15 C -0.103 4.103 16 C -0.177 4.177 17 C -0.085 4.085 18 C -0.267 4.267 19 C -0.094 4.094 20 C -0.259 4.259 21 C 0.114 3.886 22 C -0.541 4.541 23 H 0.093 0.907 24 C -0.166 4.166 25 N -0.438 5.438 26 Si 0.888 3.112 27 H -0.208 1.208 28 H -0.180 1.180 29 H -0.218 1.218 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.198 0.802 34 H 0.170 0.830 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.118 0.882 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.473 -2.612 3.607 16.101 hybrid contribution 0.081 -1.886 1.007 2.139 sum -15.392 -4.497 4.614 16.687 Atomic orbital electron populations 1.21748 0.75368 1.03953 1.02648 1.48248 1.05835 1.03307 1.58979 1.77273 1.01953 1.07491 1.25937 1.23880 0.94879 0.95575 0.99246 1.21459 0.96745 0.94867 1.12332 1.21127 0.91687 0.89835 1.03494 1.19729 0.87395 0.83797 0.98958 0.89822 1.22751 0.98855 0.97941 0.97015 1.22767 0.95390 0.96544 1.02087 1.22276 0.96299 0.96591 0.87006 1.48634 1.22868 1.40739 1.23773 1.20816 0.81220 0.83838 0.81815 1.90741 1.75951 1.43213 1.27131 1.20242 0.92927 0.96723 1.00399 1.18985 0.98444 1.03068 0.97216 1.20397 0.96910 0.97275 0.93900 1.20291 1.01329 1.04282 1.00842 1.20597 0.96906 0.95240 0.96680 1.21007 1.02370 1.03654 0.98861 1.17464 0.88549 0.91145 0.91438 1.20479 1.37688 0.99215 0.96677 0.90736 1.27057 0.89081 0.94457 1.06026 1.70552 1.28899 1.42965 1.01428 0.83740 0.78395 0.75274 0.73767 1.20828 1.18019 1.21848 0.91253 0.89673 0.90129 0.80151 0.83029 0.89925 0.90342 0.90343 0.89722 0.90177 0.91372 0.90653 0.88987 0.89363 0.89144 0.89005 0.88185 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.49 59.85 0.63 1.67 16 2 N -0.38 -5.92 4.01 -63.88 -0.26 -6.18 16 3 N -0.30 -5.61 12.58 30.62 0.39 -5.23 16 4 C 0.05 0.96 12.03 -17.37 -0.21 0.75 16 5 C -0.23 -4.57 8.90 -40.02 -0.36 -4.92 16 6 C 0.07 1.11 5.83 -82.27 -0.48 0.63 16 7 C 0.21 2.85 2.86 -68.10 -0.19 2.65 16 8 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 9 C -0.13 -1.15 5.50 -24.89 -0.14 -1.29 16 10 C -0.13 -1.00 7.09 -24.58 -0.17 -1.18 16 11 C 0.10 1.10 6.69 -2.53 -0.02 1.08 16 12 N -0.62 -9.40 2.83 -164.32 -0.46 -9.87 16 13 C 0.53 10.38 6.09 -10.98 -0.07 10.31 16 14 O -0.50 -11.98 14.67 5.56 0.08 -11.90 16 15 C -0.06 -1.20 4.36 -29.04 -0.13 -1.32 16 16 C -0.18 -4.03 4.43 -103.92 -0.46 -4.49 16 17 C -0.07 -1.44 9.66 -39.66 -0.38 -1.83 16 18 C -0.25 -5.40 10.05 -39.29 -0.39 -5.80 16 19 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 20 C -0.24 -6.01 7.29 -38.88 -0.28 -6.29 16 21 C 0.12 2.98 5.12 -106.82 -0.55 2.44 16 22 C -0.51 -13.38 8.79 -37.74 -0.33 -13.72 16 23 H 0.07 1.95 6.56 -52.49 -0.34 1.60 16 24 C 0.05 1.42 5.36 -17.34 -0.09 1.33 16 25 N -0.82 -21.78 13.65 55.55 0.76 -21.02 16 26 Si 1.06 26.08 24.96 -169.99 -4.24 21.84 16 27 H -0.28 -6.56 6.71 56.52 0.38 -6.18 16 28 H -0.26 -6.63 6.96 56.52 0.39 -6.24 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.63 7.60 -51.93 -0.39 0.23 16 33 H 0.18 3.27 8.06 -52.49 -0.42 2.85 16 34 H 0.15 3.52 6.15 -52.48 -0.32 3.19 16 35 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 36 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.76 7.48 -51.93 -0.39 0.37 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.17 7.76 -51.93 -0.40 0.77 16 42 H 0.09 1.74 6.50 -51.93 -0.34 1.40 16 43 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 44 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 46 H 0.10 2.50 4.77 -52.49 -0.25 2.25 16 47 H 0.28 7.34 8.73 -40.82 -0.36 6.98 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -33.16 376.59 -8.77 -41.93 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.68 Total: 6.84 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -4.02 Total: -22.09 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.42 Total: -42.29 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -4.24 Total: 21.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.16 -8.77 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928371809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.248 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds