Wall clock time and date at job start Sat Apr 11 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40077 * 126.03750 * 2 1 4 4 C 1.30839 * 108.20784 * 179.97438 * 3 2 1 5 5 C 1.39867 * 108.19753 * 359.77608 * 4 3 2 6 6 C 1.34946 * 126.03668 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.12685 * 359.97438 * 6 2 1 8 8 H 1.09006 * 109.99889 * 63.90394 * 7 6 2 9 9 C 1.54331 * 109.99187 * 302.86950 * 7 6 2 10 10 C 1.55166 * 103.01716 * 218.66286 * 9 7 6 11 11 C 1.54910 * 101.58114 * 35.30843 * 10 9 7 12 12 N 1.47024 * 109.88259 * 184.99609 * 7 6 2 13 13 C 1.34776 * 125.64826 * 298.39983 * 12 7 6 14 14 O 1.21275 * 120.00350 * 359.71177 * 13 12 7 15 15 C 1.50702 * 119.99743 * 179.71430 * 13 12 7 16 16 C 1.50691 * 109.47147 * 179.97438 * 15 13 12 17 17 C 1.37644 * 120.13017 * 265.30153 * 16 15 13 18 18 C 1.38614 * 120.24887 * 180.32286 * 17 16 15 19 19 C 1.38660 * 120.49992 * 359.67365 * 18 17 16 20 20 C 1.37592 * 120.24946 * 359.97438 * 19 18 17 21 21 C 1.40697 * 120.13051 * 85.00071 * 16 15 13 22 22 C 1.41400 * 120.23779 * 359.97216 * 21 16 15 23 23 H 1.08001 * 120.00164 * 27.58937 * 22 21 16 24 24 C 1.39953 * 119.99698 * 207.57845 * 22 21 16 25 25 N 1.30821 * 119.99662 * 202.20905 * 24 22 21 26 26 Si 1.86793 * 119.99977 * 21.93925 * 24 22 21 27 27 H 1.48504 * 109.46978 * 263.32532 * 26 24 22 28 28 H 1.48495 * 109.47684 * 23.32676 * 26 24 22 29 29 H 1.48496 * 109.47263 * 143.33080 * 26 24 22 30 30 H 1.09000 * 109.46696 * 270.02351 * 1 2 3 31 31 H 1.09000 * 109.47383 * 30.02215 * 1 2 3 32 32 H 1.09003 * 109.47336 * 150.02231 * 1 2 3 33 33 H 1.08000 * 125.89783 * 180.02562 * 4 3 2 34 34 H 1.08004 * 126.03619 * 180.23036 * 5 4 3 35 35 H 1.09004 * 110.85314 * 100.19993 * 9 7 6 36 36 H 1.08997 * 110.66984 * 337.04401 * 9 7 6 37 37 H 1.08996 * 111.00540 * 277.23139 * 10 9 7 38 38 H 1.09004 * 110.99958 * 153.37686 * 10 9 7 39 39 H 1.08997 * 110.36400 * 204.15257 * 11 10 9 40 40 H 1.08996 * 110.45966 * 81.87105 * 11 10 9 41 41 H 1.09005 * 109.47302 * 59.99906 * 15 13 12 42 42 H 1.08995 * 109.47211 * 300.00044 * 15 13 12 43 43 H 1.08001 * 119.87530 * 0.03968 * 17 16 15 44 44 H 1.07998 * 119.75253 * 179.69571 * 18 17 16 45 45 H 1.07996 * 119.87789 * 180.02562 * 19 18 17 46 46 H 1.08000 * 120.13140 * 180.02562 * 20 19 18 47 47 H 0.97006 * 120.00294 * 352.91158 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6665 0.0061 6 6 2.2590 -1.0912 0.0005 7 6 1.7974 -2.5258 0.0017 8 1 1.2539 -2.7433 -0.9179 9 6 0.8869 -2.7861 1.2203 10 6 1.3046 -4.2110 1.6707 11 6 2.8240 -4.1996 1.3689 12 7 2.9554 -3.4236 0.1223 13 6 3.9716 -3.5173 -0.7580 14 8 3.9763 -2.8265 -1.7547 15 6 5.1022 -4.4808 -0.5037 16 6 6.1004 -4.3921 -1.6291 17 6 6.0245 -5.2654 -2.6904 18 6 6.9454 -5.1904 -3.7236 19 6 7.9481 -4.2328 -3.7045 20 6 8.0388 -3.3450 -2.6573 21 6 7.1098 -3.4124 -1.6023 22 6 7.1934 -2.5055 -0.5207 23 1 6.8264 -2.7920 0.4538 24 6 7.7518 -1.2367 -0.7130 25 7 8.2293 -0.5708 0.3069 26 14 7.8223 -0.4972 -2.4268 27 1 9.1608 -0.7477 -3.0194 28 1 6.7790 -1.1221 -3.2790 29 1 7.5834 0.9661 -2.3448 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 4.4054 1.3710 0.0011 34 1 4.4211 -1.2963 0.0114 35 1 -0.1639 -2.7657 0.9310 36 1 1.0825 -2.0596 2.0089 37 1 0.7948 -4.9724 1.0805 38 1 1.1188 -4.3544 2.7351 39 1 3.1894 -5.2161 1.2232 40 1 3.3694 -3.7133 2.1777 41 1 4.7088 -5.4958 -0.4465 42 1 5.5911 -4.2271 0.4369 43 1 5.2472 -6.0148 -2.7158 44 1 6.8814 -5.8828 -4.5500 45 1 8.6601 -4.1832 -4.5151 46 1 8.8203 -2.5996 -2.6446 47 1 8.1049 -0.9085 1.2078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928371809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:33 Heat of formation + Delta-G solvation = 48.620917 kcal Electronic energy + Delta-G solvation = -30641.644578 eV Core-core repulsion = 26789.985167 eV Total energy + Delta-G solvation = -3851.659410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.48583 -40.90046 -39.57202 -38.16989 -35.58193 -34.40589 -33.68086 -32.39716 -32.16626 -31.92144 -28.94305 -28.40503 -27.60334 -26.41173 -24.60892 -23.18693 -22.49399 -22.17677 -21.76996 -20.88256 -20.02360 -19.66459 -18.32175 -18.00995 -17.20774 -16.69331 -16.56183 -16.31651 -15.95462 -15.85558 -15.46432 -15.31340 -14.99785 -14.58116 -14.48856 -14.36744 -14.11131 -13.92704 -13.76706 -13.62380 -13.58980 -13.29259 -13.18540 -13.00461 -12.76428 -12.63609 -12.43872 -12.19932 -12.08555 -11.93904 -11.79154 -11.67103 -11.59089 -11.15532 -10.83147 -10.72595 -10.23778 -9.69216 -9.55911 -9.46521 -9.32342 -9.11202 -6.42920 0.80237 0.82930 0.93660 1.29219 1.47322 1.51891 1.70518 1.78263 1.88531 2.12901 2.14901 2.71169 3.38278 3.46117 3.60895 3.62381 3.75259 4.01594 4.11043 4.18331 4.27155 4.29310 4.32057 4.40975 4.47885 4.52638 4.55792 4.60631 4.66591 4.67921 4.76538 4.82855 4.88667 4.91207 4.95010 5.00419 5.05086 5.15297 5.28533 5.33681 5.46790 5.53933 5.60392 5.64201 5.86253 5.93213 6.05891 6.09537 6.21645 6.51458 6.57096 6.64158 6.77946 6.91775 7.38503 8.08122 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.005168 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.092541 B = 5416.633308 C = 6820.040128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.367 5.367 3 N -0.319 5.319 4 C 0.028 3.972 5 C -0.269 4.269 6 C 0.083 3.917 7 C 0.200 3.800 8 H 0.090 0.910 9 C -0.116 4.116 10 C -0.113 4.113 11 C 0.087 3.913 12 N -0.619 5.619 13 C 0.534 3.466 14 O -0.557 6.557 15 C -0.062 4.062 16 C -0.178 4.178 17 C -0.077 4.077 18 C -0.236 4.236 19 C -0.089 4.089 20 C -0.264 4.264 21 C 0.089 3.911 22 C -0.526 4.526 23 H 0.059 0.941 24 C 0.027 3.973 25 N -0.844 5.844 26 Si 1.088 2.912 27 H -0.262 1.262 28 H -0.281 1.281 29 H -0.287 1.287 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.176 0.824 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.121 0.879 46 H 0.091 0.909 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.941 -8.269 4.802 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.151 5.151 3 N -0.142 5.142 4 C -0.156 4.156 5 C -0.298 4.298 6 C -0.047 4.047 7 C 0.093 3.907 8 H 0.107 0.893 9 C -0.154 4.154 10 C -0.151 4.151 11 C -0.035 4.035 12 N -0.354 5.354 13 C 0.324 3.676 14 O -0.433 6.433 15 C -0.102 4.102 16 C -0.179 4.179 17 C -0.095 4.095 18 C -0.254 4.254 19 C -0.107 4.107 20 C -0.283 4.283 21 C 0.086 3.914 22 C -0.556 4.556 23 H 0.077 0.923 24 C -0.188 4.188 25 N -0.468 5.468 26 Si 0.913 3.087 27 H -0.188 1.188 28 H -0.206 1.206 29 H -0.214 1.214 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.193 0.807 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.134 0.866 42 H 0.102 0.898 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.139 0.861 46 H 0.109 0.891 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.214 -5.566 3.469 20.303 hybrid contribution 1.057 -1.187 0.983 1.868 sum -18.157 -6.753 4.452 19.878 Atomic orbital electron populations 1.22328 0.71608 1.05901 1.05259 1.48666 1.07724 1.02061 1.56643 1.77174 1.01566 1.08954 1.26502 1.23864 0.95574 0.95569 1.00627 1.21249 0.97340 0.94909 1.16342 1.21513 0.90709 0.91728 1.00762 1.20169 0.87456 0.81252 1.01777 0.89268 1.22805 0.99681 0.98620 0.94337 1.22791 0.92171 0.95990 1.04156 1.22658 0.99392 0.96666 0.84755 1.48585 1.22055 1.40769 1.24026 1.20712 0.81956 0.83173 0.81763 1.90708 1.77412 1.45287 1.29893 1.20251 0.92352 0.99032 0.98522 1.19472 0.98055 1.01772 0.98607 1.20862 0.97785 0.97656 0.93231 1.20835 0.99781 1.03485 1.01344 1.20977 0.98063 0.94857 0.96806 1.21165 1.02595 1.04578 0.99989 1.17748 0.89862 0.92127 0.91657 1.20368 1.38899 0.99715 0.96569 0.92309 1.27551 0.89201 0.94907 1.07137 1.70577 1.31309 1.43635 1.01313 0.83348 0.78361 0.74840 0.72111 1.18793 1.20638 1.21440 0.88201 0.88907 0.87140 0.80712 0.86846 0.85943 0.90921 0.88400 0.86949 0.88457 0.92184 0.86587 0.89825 0.85744 0.85548 0.86138 0.89146 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 10.49 127.77 1.34 2.78 16 2 N -0.37 -11.08 4.01 -356.02 -1.43 -12.51 16 3 N -0.32 -12.04 12.58 -57.02 -0.72 -12.76 16 4 C 0.03 1.16 12.03 85.24 1.03 2.18 16 5 C -0.27 -11.68 8.90 21.99 0.20 -11.49 16 6 C 0.08 2.78 5.83 41.40 0.24 3.03 16 7 C 0.20 5.05 2.86 44.60 0.13 5.18 16 8 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 9 C -0.12 -1.57 5.50 31.79 0.17 -1.39 16 10 C -0.11 -1.18 7.09 31.99 0.23 -0.95 16 11 C 0.09 1.66 6.69 86.85 0.58 2.24 16 12 N -0.62 -18.04 2.83 -792.16 -2.24 -20.28 16 13 C 0.53 20.96 6.09 87.66 0.53 21.50 16 14 O -0.56 -27.64 14.67 -3.01 -0.04 -27.69 16 15 C -0.06 -2.34 4.36 29.10 0.13 -2.21 16 16 C -0.18 -8.13 4.43 -19.41 -0.09 -8.22 16 17 C -0.08 -3.17 9.66 22.22 0.21 -2.96 16 18 C -0.24 -9.58 10.05 22.46 0.23 -9.35 16 19 C -0.09 -3.94 10.02 22.22 0.22 -3.72 16 20 C -0.26 -13.49 7.29 22.73 0.17 -13.33 16 21 C 0.09 4.67 5.12 -21.29 -0.11 4.57 16 22 C -0.53 -29.37 8.79 23.46 0.21 -29.16 16 23 H 0.06 3.35 6.56 -2.91 -0.02 3.33 16 24 C 0.03 1.53 5.36 85.26 0.46 1.99 16 25 N -0.84 -48.26 13.65 21.83 0.30 -47.96 16 26 Si 1.09 56.01 24.96 68.60 1.71 57.72 16 27 H -0.26 -12.45 6.71 99.48 0.67 -11.78 16 28 H -0.28 -15.42 6.96 99.48 0.69 -14.73 16 29 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.11 1.18 7.60 -2.39 -0.02 1.16 16 33 H 0.18 7.15 8.06 -2.91 -0.02 7.12 16 34 H 0.11 5.81 6.15 -2.91 -0.02 5.79 16 35 H 0.12 0.77 8.05 -2.39 -0.02 0.75 16 36 H 0.07 1.13 7.84 -2.39 -0.02 1.11 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.10 1.52 7.48 -2.39 -0.02 1.50 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.12 3.30 7.76 -2.38 -0.02 3.28 16 42 H 0.08 3.28 6.50 -2.39 -0.02 3.26 16 43 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 44 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 45 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 46 H 0.09 4.69 4.77 -2.91 -0.01 4.67 16 47 H 0.28 15.61 8.73 -92.70 -0.81 14.81 16 Total: -1.00 -80.28 376.59 4.34 -75.94 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.89 Total: 26.85 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 5.87 Total: -39.32 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -4.09 Total: -93.50 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.04 Total: -27.69 kcal Atomic # 14 Polarization: 56.01 SS G_CDS: 1.71 Total: 57.72 kcal Total: -80.28 4.34 -75.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928371809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.556 kcal (2) G-P(sol) polarization free energy of solvation -80.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds