Wall clock time and date at job start Sat Apr 11 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.40088 * 126.04061 * 2 1 4 4 C 1.30840 * 108.20829 * 180.23646 * 3 2 1 5 5 C 1.39868 * 108.20118 * 359.78340 * 4 3 2 6 6 C 1.34947 * 126.03744 * 179.85452 * 2 1 3 7 7 C 1.50699 * 126.12687 * 0.03506 * 6 2 1 8 8 H 1.08997 * 109.87316 * 295.72739 * 7 6 2 9 9 C 1.54323 * 110.01161 * 56.82529 * 7 6 2 10 10 C 1.55161 * 102.94036 * 141.68207 * 9 7 6 11 11 C 1.55126 * 101.48996 * 324.33393 * 10 9 7 12 12 N 1.47031 * 109.88330 * 174.71401 * 7 6 2 13 13 C 1.34774 * 125.64913 * 61.44921 * 12 7 6 14 14 O 1.21276 * 119.99765 * 359.97438 * 13 12 7 15 15 C 1.50700 * 119.99975 * 180.02562 * 13 12 7 16 16 C 1.50694 * 109.46878 * 179.97438 * 15 13 12 17 17 C 1.37637 * 120.12687 * 264.99241 * 16 15 13 18 18 C 1.38610 * 120.24933 * 180.02562 * 17 16 15 19 19 C 1.38660 * 120.50316 * 0.02720 * 18 17 16 20 20 C 1.37596 * 120.24485 * 359.97438 * 19 18 17 21 21 C 1.40700 * 120.13068 * 85.02220 * 16 15 13 22 22 C 1.41392 * 120.24032 * 359.95553 * 21 16 15 23 23 H 1.08008 * 120.00220 * 334.02906 * 22 21 16 24 24 C 1.39949 * 120.00054 * 154.03946 * 22 21 16 25 25 N 1.30824 * 119.99650 * 343.67026 * 24 22 21 26 26 Si 1.86795 * 120.00010 * 163.67169 * 24 22 21 27 27 H 1.48503 * 109.47267 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47362 * 119.99959 * 26 24 22 29 29 H 1.48504 * 109.47163 * 239.99501 * 26 24 22 30 30 H 1.09003 * 109.47033 * 270.14460 * 1 2 3 31 31 H 1.09005 * 109.47555 * 30.14377 * 1 2 3 32 32 H 1.09002 * 109.47394 * 150.15012 * 1 2 3 33 33 H 1.08002 * 125.89714 * 179.81992 * 4 3 2 34 34 H 1.08000 * 126.03899 * 180.02562 * 5 4 3 35 35 H 1.09002 * 110.72189 * 260.04772 * 9 7 6 36 36 H 1.08997 * 110.72258 * 23.14513 * 9 7 6 37 37 H 1.09008 * 110.99952 * 82.57464 * 10 9 7 38 38 H 1.08999 * 111.00542 * 206.38420 * 10 9 7 39 39 H 1.08996 * 110.49389 * 278.45397 * 11 10 9 40 40 H 1.09001 * 110.34525 * 156.05830 * 11 10 9 41 41 H 1.08997 * 109.47069 * 59.99879 * 15 13 12 42 42 H 1.09000 * 109.46917 * 299.99799 * 15 13 12 43 43 H 1.08005 * 119.87873 * 0.02562 * 17 16 15 44 44 H 1.07998 * 119.75234 * 180.02562 * 18 17 16 45 45 H 1.08003 * 119.87729 * 179.70405 * 19 18 17 46 46 H 1.08002 * 120.12527 * 179.97438 * 20 19 18 47 47 H 0.97000 * 119.99561 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7321 -0.0051 5 6 3.5437 -0.6666 -0.0035 6 6 2.2588 -1.0912 0.0028 7 6 1.7973 -2.5258 0.0057 8 1 1.2597 -2.7402 0.9293 9 6 0.8808 -2.7881 -1.2079 10 6 1.2916 -4.2172 -1.6511 11 6 2.8157 -4.2041 -1.3622 12 7 2.9548 -3.4238 -0.1192 13 6 3.9766 -3.5143 0.7550 14 8 3.9901 -2.8160 1.7464 15 6 5.1028 -4.4826 0.4999 16 6 6.1093 -4.3880 1.6175 17 6 7.2145 -3.5784 1.4852 18 6 8.1421 -3.4900 2.5114 19 6 7.9691 -4.2145 3.6809 20 6 6.8717 -5.0302 3.8350 21 6 5.9232 -5.1275 2.8000 22 6 4.7915 -5.9622 2.9472 23 1 3.8863 -5.7465 2.3988 24 6 4.8441 -7.0678 3.8036 25 7 5.9998 -7.5209 4.2165 26 14 3.2642 -7.8966 4.3570 27 1 2.1009 -7.1973 3.7543 28 1 3.2701 -9.3157 3.9197 29 1 3.1653 -7.8353 5.8374 30 1 -0.3633 0.0026 1.0277 31 1 -0.3634 0.8887 -0.5161 32 1 -0.3634 -0.8913 -0.5115 33 1 4.4054 1.3710 -0.0092 34 1 4.4211 -1.2963 -0.0063 35 1 -0.1680 -2.7627 -0.9119 36 1 1.0739 -2.0653 -2.0005 37 1 0.7835 -4.9731 -1.0522 38 1 1.0977 -4.3679 -2.7131 39 1 3.3543 -3.7196 -2.1766 40 1 3.1823 -5.2201 -1.2154 41 1 5.5862 -4.2367 -0.4456 42 1 4.7063 -5.4968 0.4524 43 1 7.3595 -3.0099 0.5785 44 1 9.0061 -2.8519 2.3992 45 1 8.7006 -4.1417 4.4721 46 1 6.7391 -5.5940 4.7465 47 1 6.0363 -8.2874 4.8097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928371810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:36 Heat of formation + Delta-G solvation = 52.528721 kcal Electronic energy + Delta-G solvation = -30014.572571 eV Core-core repulsion = 26163.082615 eV Total energy + Delta-G solvation = -3851.489955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.45986 -40.84817 -39.39075 -38.12927 -35.48820 -34.39413 -33.59340 -32.36921 -32.08893 -31.31870 -28.90513 -28.36213 -27.62556 -26.87117 -24.57749 -22.81823 -22.52726 -22.16674 -21.79314 -20.93998 -19.68729 -19.02699 -18.27238 -17.96931 -17.25093 -16.70316 -16.38306 -16.27410 -16.02718 -15.72624 -15.36045 -15.07118 -14.91991 -14.54473 -14.44449 -14.36904 -14.12558 -13.81567 -13.61604 -13.51955 -13.36568 -13.26615 -13.08867 -12.89448 -12.73046 -12.62168 -12.49540 -12.38641 -12.11813 -12.00902 -11.75172 -11.65677 -11.31281 -11.19128 -11.02253 -10.68784 -10.22396 -9.66065 -9.44167 -9.21410 -9.14992 -8.58479 -6.28045 0.85051 0.99360 1.13576 1.35801 1.49098 1.51878 1.52836 1.84192 1.89356 2.17366 2.20394 2.79435 3.41334 3.49412 3.66669 3.75369 3.78847 4.06724 4.16169 4.19824 4.35373 4.38161 4.39515 4.44481 4.53418 4.60508 4.62085 4.66598 4.70935 4.76678 4.79104 4.83517 4.89179 4.96096 5.03885 5.09167 5.17138 5.20919 5.34703 5.37651 5.49896 5.56073 5.67105 5.78541 6.04991 6.08440 6.17711 6.22631 6.43178 6.58727 6.69501 6.75084 7.00623 7.12563 7.40973 8.38307 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011420 B = 0.004098 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.316265 B = 6831.737208 C = 8099.863821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.371 5.371 3 N -0.324 5.324 4 C 0.036 3.964 5 C -0.268 4.268 6 C 0.081 3.919 7 C 0.196 3.804 8 H 0.073 0.927 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.087 3.913 12 N -0.618 5.618 13 C 0.533 3.467 14 O -0.559 6.559 15 C -0.060 4.060 16 C -0.186 4.186 17 C -0.090 4.090 18 C -0.242 4.242 19 C -0.118 4.118 20 C -0.194 4.194 21 C 0.098 3.902 22 C -0.480 4.480 23 H 0.070 0.930 24 C 0.036 3.964 25 N -0.827 5.827 26 Si 0.971 3.029 27 H -0.261 1.261 28 H -0.258 1.258 29 H -0.272 1.272 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.198 0.802 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.663 4.967 -15.040 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.155 5.155 3 N -0.147 5.147 4 C -0.149 4.149 5 C -0.298 4.298 6 C -0.049 4.049 7 C 0.090 3.910 8 H 0.091 0.909 9 C -0.154 4.154 10 C -0.156 4.156 11 C -0.034 4.034 12 N -0.353 5.353 13 C 0.323 3.677 14 O -0.436 6.436 15 C -0.099 4.099 16 C -0.187 4.187 17 C -0.108 4.108 18 C -0.261 4.261 19 C -0.136 4.136 20 C -0.213 4.213 21 C 0.096 3.904 22 C -0.510 4.510 23 H 0.088 0.912 24 C -0.178 4.178 25 N -0.453 5.453 26 Si 0.793 3.207 27 H -0.185 1.185 28 H -0.183 1.183 29 H -0.197 1.197 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.135 0.865 33 H 0.215 0.785 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.122 0.878 46 H 0.114 0.886 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.415 6.148 -14.314 21.225 hybrid contribution 0.720 -0.925 1.155 1.645 sum -13.696 5.223 -13.160 19.698 Atomic orbital electron populations 1.22345 0.72241 1.06543 1.04410 1.48615 1.07583 1.02292 1.57006 1.77208 1.02132 1.08851 1.26486 1.24117 0.95803 0.95169 0.99778 1.21214 0.96860 0.95056 1.16655 1.21448 0.91454 0.91141 1.00810 1.20088 0.87596 0.82140 1.01176 0.90922 1.22809 0.99282 0.98725 0.94634 1.22839 0.92752 0.95763 1.04263 1.22731 0.99047 0.96554 0.85090 1.48579 1.21605 1.40582 1.24566 1.20798 0.82436 0.83002 0.81432 1.90710 1.78087 1.45562 1.29234 1.20212 0.92741 0.98910 0.98074 1.19521 0.97796 1.05623 0.95792 1.20703 0.94489 0.97421 0.98175 1.20696 1.02317 1.06967 0.96147 1.20940 0.97465 0.97558 0.97666 1.21289 0.97855 1.02543 0.99626 1.17713 0.92319 0.90327 0.90076 1.19616 0.98777 1.08722 1.23912 0.91179 1.26665 1.00237 0.97048 0.93845 1.69892 1.27544 1.21167 1.26709 0.85324 0.78341 0.78454 0.78609 1.18510 1.18277 1.19709 0.90478 0.87971 0.86527 0.78491 0.86080 0.86695 0.89629 0.89812 0.86378 0.89963 0.89483 0.87650 0.88603 0.86818 0.86839 0.87825 0.88629 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 11.23 127.77 1.43 2.73 16 2 N -0.37 -9.91 4.01 -356.03 -1.43 -11.33 16 3 N -0.32 -10.16 12.58 -57.02 -0.72 -10.88 16 4 C 0.04 1.13 12.03 85.24 1.02 2.15 16 5 C -0.27 -9.24 8.88 21.99 0.20 -9.05 16 6 C 0.08 2.40 5.84 41.41 0.24 2.64 16 7 C 0.20 4.91 3.10 44.59 0.14 5.05 16 8 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 9 C -0.12 -1.53 4.97 31.78 0.16 -1.37 16 10 C -0.12 -1.35 7.10 32.06 0.23 -1.12 16 11 C 0.09 1.61 6.70 86.93 0.58 2.19 16 12 N -0.62 -17.73 2.83 -791.74 -2.24 -19.97 16 13 C 0.53 20.85 5.74 87.66 0.50 21.35 16 14 O -0.56 -27.63 14.60 -3.02 -0.04 -27.68 16 15 C -0.06 -2.33 4.18 29.10 0.12 -2.20 16 16 C -0.19 -9.04 4.43 -19.41 -0.09 -9.13 16 17 C -0.09 -4.13 9.66 22.22 0.21 -3.91 16 18 C -0.24 -11.30 10.05 22.46 0.23 -11.08 16 19 C -0.12 -5.95 10.02 22.22 0.22 -5.73 16 20 C -0.19 -10.90 8.69 22.73 0.20 -10.71 16 21 C 0.10 5.43 5.56 -21.29 -0.12 5.31 16 22 C -0.48 -26.08 8.14 23.46 0.19 -25.89 16 23 H 0.07 3.71 6.68 -2.91 -0.02 3.69 16 24 C 0.04 1.86 5.16 85.26 0.44 2.30 16 25 N -0.83 -44.08 10.97 21.83 0.24 -43.84 16 26 Si 0.97 39.04 29.59 68.60 2.03 41.07 16 27 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 28 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 29 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.12 1.04 5.35 -2.39 -0.01 1.03 16 33 H 0.20 5.05 8.06 -2.91 -0.02 5.03 16 34 H 0.12 4.64 6.11 -2.91 -0.02 4.63 16 35 H 0.11 0.84 7.12 -2.39 -0.02 0.82 16 36 H 0.09 1.08 7.85 -2.39 -0.02 1.06 16 37 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.58 7.48 -2.39 -0.02 1.56 16 41 H 0.11 3.34 8.05 -2.39 -0.02 3.32 16 42 H 0.10 3.68 6.77 -2.39 -0.02 3.67 16 43 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 44 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 45 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 46 H 0.10 5.63 6.22 -2.91 -0.02 5.61 16 47 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 Total: -1.00 -78.17 378.39 4.74 -73.43 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.98 Total: 35.65 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 5.92 Total: -36.45 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -4.15 Total: -86.02 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -78.17 4.74 -73.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928371810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.958 kcal (2) G-P(sol) polarization free energy of solvation -78.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds