Wall clock time and date at job start Sat Apr 11 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36453 * 124.85106 * 2 1 4 4 C 1.34481 * 108.85811 * 180.02562 * 3 2 1 5 5 C 1.46686 * 106.33157 * 0.23554 * 4 3 2 6 6 C 1.47265 * 126.94122 * 179.73896 * 5 4 3 7 7 O 1.21629 * 120.00049 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00039 * 0.02884 * 6 5 4 9 9 C 1.46501 * 119.99765 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47106 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.43652 * 64.92163 * 10 9 8 12 12 C 1.50805 * 109.44080 * 184.79924 * 10 9 8 13 13 C 1.38842 * 117.79440 * 289.14207 * 12 10 9 14 14 C 1.37960 * 120.50829 * 179.55987 * 13 12 10 15 15 C 1.38271 * 119.71456 * 359.96173 * 14 13 12 16 16 C 1.37906 * 119.82732 * 0.22125 * 15 14 13 17 17 C 1.37668 * 122.36290 * 109.02324 * 12 10 9 18 18 C 1.50608 * 122.86400 * 0.73568 * 17 12 10 19 19 C 1.52788 * 110.85808 * 340.27942 * 18 17 12 20 20 N 1.46685 * 109.43619 * 305.00468 * 10 9 8 21 21 C 1.36944 * 121.34841 * 104.21661 * 20 10 9 22 22 H 1.07997 * 119.99534 * 333.24907 * 21 20 10 23 23 C 1.38805 * 120.00215 * 153.24894 * 21 20 10 24 24 N 1.31618 * 120.00334 * 341.52304 * 23 21 20 25 25 Si 1.86802 * 120.00018 * 161.51589 * 23 21 20 26 26 H 1.48508 * 109.46956 * 90.00282 * 25 23 21 27 27 H 1.48504 * 109.47288 * 210.00130 * 25 23 21 28 28 H 1.48495 * 109.47205 * 330.00456 * 25 23 21 29 29 C 1.34654 * 124.85278 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46998 * 90.02455 * 1 2 3 31 31 H 1.08995 * 109.47136 * 210.02343 * 1 2 3 32 32 H 1.08996 * 109.47276 * 330.02843 * 1 2 3 33 33 H 1.08003 * 125.56592 * 359.97438 * 3 2 1 34 34 H 1.07994 * 126.83435 * 179.97438 * 4 3 2 35 35 H 0.96998 * 119.99894 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.47972 * 300.00365 * 9 8 6 37 37 H 1.09002 * 109.47100 * 60.00654 * 9 8 6 38 38 H 1.08001 * 119.75142 * 359.57668 * 13 12 10 39 39 H 1.07998 * 120.14266 * 179.97438 * 14 13 12 40 40 H 1.08004 * 120.08554 * 180.23722 * 15 14 13 41 41 H 1.07995 * 119.70929 * 179.97438 * 16 15 14 42 42 H 1.09004 * 109.19852 * 219.92055 * 18 17 12 43 43 H 1.08998 * 109.15919 * 100.61308 * 18 17 12 44 44 H 1.09001 * 109.77757 * 287.84747 * 19 18 17 45 45 H 1.08999 * 109.82690 * 167.05891 * 19 18 17 46 46 H 0.97000 * 120.00224 * 179.97438 * 24 23 21 47 47 H 1.08004 * 125.80090 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7493 -0.0006 5 6 3.5462 -0.7176 -0.0067 6 6 4.7284 -1.5956 -0.0149 7 8 4.5885 -2.8038 -0.0199 8 7 5.9653 -1.0604 -0.0167 9 6 7.1413 -1.9340 -0.0243 10 6 8.4109 -1.0801 -0.0243 11 1 8.4716 -0.5203 0.9091 12 6 9.6179 -1.9753 -0.1510 13 6 9.9531 -2.7681 0.9384 14 6 11.0410 -3.6145 0.8802 15 6 11.8024 -3.6738 -0.2725 16 6 11.4726 -2.8840 -1.3538 17 6 10.3795 -2.0277 -1.2966 18 6 10.0859 -1.1884 -2.5123 19 6 8.6419 -0.6897 -2.4932 20 7 8.3697 -0.1441 -1.1530 21 6 8.0889 1.1834 -0.9678 22 1 7.4912 1.4963 -0.1245 23 6 8.5726 2.1267 -1.8639 24 7 9.5746 1.8236 -2.6616 25 14 7.8011 3.8263 -1.9379 26 1 8.5028 4.7301 -0.9912 27 1 7.9205 4.3646 -3.3168 28 1 6.3667 3.7356 -1.5644 29 6 2.2345 -1.1050 0.0005 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 1.8827 2.1373 -0.0004 34 1 4.3980 1.4018 -0.0011 35 1 6.0768 -0.0969 -0.0123 36 1 7.1297 -2.5669 0.8630 37 1 7.1237 -2.5593 -0.9169 38 1 9.3576 -2.7221 1.8382 39 1 11.2967 -4.2283 1.7312 40 1 12.6531 -4.3371 -0.3259 41 1 12.0689 -2.9315 -2.2530 42 1 10.2466 -1.7874 -3.4087 43 1 10.7607 -0.3325 -2.5276 44 1 7.9631 -1.5173 -2.6994 45 1 8.5103 0.0907 -3.2427 46 1 9.9124 2.4827 -3.2880 47 1 1.8767 -2.1240 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948907106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:46 Heat of formation + Delta-G solvation = 64.345238 kcal Electronic energy + Delta-G solvation = -29500.122588 eV Core-core repulsion = 25649.145035 eV Total energy + Delta-G solvation = -3850.977552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.05862 -39.46373 -38.40558 -36.17416 -33.95188 -32.81159 -32.26020 -31.75853 -29.82709 -29.08628 -28.58232 -27.30778 -26.18168 -24.16917 -22.64145 -22.22826 -21.72023 -21.06753 -19.96495 -19.24527 -18.57351 -17.73720 -16.69216 -15.87540 -15.47056 -15.39399 -15.26768 -15.14211 -14.49767 -14.39738 -14.11206 -14.03030 -13.68392 -13.37499 -13.04993 -13.01266 -12.64579 -12.53143 -12.49727 -12.33553 -12.26956 -12.02829 -11.81968 -11.64532 -11.17496 -11.06868 -11.00592 -10.78698 -10.64235 -10.41024 -10.06118 -9.81114 -9.51846 -9.35273 -8.56378 -8.54544 -8.34723 -8.19727 -8.08758 -7.85546 -6.77705 -5.88119 -3.31106 1.93143 2.00354 2.03119 2.59874 2.84950 3.32545 3.40434 3.40822 3.99746 4.07963 4.36377 4.40435 4.58258 4.91214 4.96228 5.08855 5.15147 5.27881 5.30944 5.42332 5.47654 5.52473 5.56289 5.65027 5.67189 5.90737 5.99857 6.05249 6.06269 6.14872 6.27932 6.39367 6.44241 6.51312 6.61532 6.66951 6.79991 6.83618 6.89462 7.01203 7.06566 7.11499 7.21995 7.29122 7.40041 7.43196 7.58994 7.66944 7.73340 8.32219 8.34260 8.94512 9.09711 9.71799 10.31370 11.19289 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009764 B = 0.004130 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.084392 B = 6778.257688 C = 9100.336623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.452 5.452 3 C -0.025 4.025 4 C -0.159 4.159 5 C -0.224 4.224 6 C 0.584 3.416 7 O -0.573 6.573 8 N -0.700 5.700 9 C 0.116 3.884 10 C 0.193 3.807 11 H 0.076 0.924 12 C -0.078 4.078 13 C -0.118 4.118 14 C -0.140 4.140 15 C -0.129 4.129 16 C -0.135 4.135 17 C -0.040 4.040 18 C -0.096 4.096 19 C 0.165 3.835 20 N -0.579 5.579 21 C -0.255 4.255 22 H 0.067 0.933 23 C 0.011 3.989 24 N -0.892 5.892 25 Si 0.900 3.100 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.277 1.277 29 C 0.064 3.936 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.410 0.590 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.047 0.953 43 H 0.101 0.899 44 H 0.007 0.993 45 H 0.094 0.906 46 H 0.254 0.746 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 -4.150 4.747 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.128 5.128 3 C -0.151 4.151 4 C -0.184 4.184 5 C -0.234 4.234 6 C 0.372 3.628 7 O -0.455 6.455 8 N -0.351 5.351 9 C -0.010 4.010 10 C 0.085 3.915 11 H 0.094 0.906 12 C -0.080 4.080 13 C -0.137 4.137 14 C -0.158 4.158 15 C -0.147 4.147 16 C -0.153 4.153 17 C -0.040 4.040 18 C -0.134 4.134 19 C 0.040 3.960 20 N -0.299 5.299 21 C -0.384 4.384 22 H 0.085 0.915 23 C -0.189 4.189 24 N -0.535 5.535 25 Si 0.730 3.270 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.202 1.202 29 C -0.071 4.071 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.182 0.818 34 H 0.167 0.833 35 H 0.248 0.752 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.066 0.934 43 H 0.119 0.881 44 H 0.025 0.975 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.563 -4.789 4.598 12.476 hybrid contribution -0.021 1.368 -0.113 1.373 sum -10.584 -3.421 4.485 11.993 Atomic orbital electron populations 1.22052 0.77348 1.04325 1.03302 1.43563 1.06465 1.05996 1.56811 1.21708 0.90635 0.91074 1.11708 1.22215 0.96343 0.93505 1.06287 1.20464 0.92647 0.93455 1.16824 1.17374 0.82659 0.86827 0.75897 1.90707 1.86965 1.14856 1.52971 1.45699 1.04545 1.11531 1.73303 1.21836 0.85462 0.92968 1.00753 1.19623 0.88501 0.89780 0.93645 0.90567 1.20103 0.97650 0.97052 0.93238 1.21103 0.97518 0.96815 0.98274 1.20874 0.96717 1.00298 0.97893 1.20905 0.99788 1.00023 0.93986 1.21188 0.97814 0.97709 0.98559 1.19874 0.93414 0.94752 0.95941 1.20996 1.02441 0.98112 0.91887 1.20784 0.90500 0.96001 0.88724 1.44100 1.81558 1.04147 1.00134 1.19002 1.26144 0.81646 1.11645 0.91502 1.24974 0.96048 0.97545 1.00354 1.69968 1.23766 1.34484 1.25263 0.86345 0.79302 0.84358 0.77029 1.21510 1.21658 1.20248 1.21704 0.89906 0.91493 1.03950 0.90896 0.89841 0.89826 0.81827 0.83263 0.75221 0.92615 0.92306 0.86752 0.87001 0.87118 0.86947 0.93415 0.88100 0.97516 0.88767 0.93551 0.81125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.04 59.85 0.66 1.11 16 2 N -0.45 -5.06 3.09 -124.53 -0.38 -5.45 16 3 C -0.03 -0.31 11.34 -16.82 -0.19 -0.50 16 4 C -0.16 -2.39 10.56 -37.50 -0.40 -2.78 16 5 C -0.22 -3.72 6.29 -103.35 -0.65 -4.37 16 6 C 0.58 11.37 7.81 -12.59 -0.10 11.27 16 7 O -0.57 -12.57 16.91 5.25 0.09 -12.48 16 8 N -0.70 -13.41 5.38 -61.43 -0.33 -13.74 16 9 C 0.12 2.25 5.01 -4.04 -0.02 2.23 16 10 C 0.19 3.91 2.50 -68.93 -0.17 3.74 16 11 H 0.08 1.55 7.98 -51.93 -0.41 1.13 16 12 C -0.08 -1.54 5.17 -104.56 -0.54 -2.08 16 13 C -0.12 -2.02 9.33 -39.46 -0.37 -2.39 16 14 C -0.14 -2.17 10.05 -39.67 -0.40 -2.57 16 15 C -0.13 -2.02 10.04 -39.69 -0.40 -2.42 16 16 C -0.13 -2.35 9.59 -39.43 -0.38 -2.73 16 17 C -0.04 -0.79 5.76 -104.60 -0.60 -1.39 16 18 C -0.10 -2.03 5.77 -28.04 -0.16 -2.20 16 19 C 0.17 3.78 5.46 -3.75 -0.02 3.76 16 20 N -0.58 -13.24 2.30 -166.31 -0.38 -13.62 16 21 C -0.26 -6.25 8.73 -15.06 -0.13 -6.38 16 22 H 0.07 1.57 7.29 -52.49 -0.38 1.19 16 23 C 0.01 0.27 4.93 -17.43 -0.09 0.18 16 24 N -0.89 -23.58 10.13 55.49 0.56 -23.01 16 25 Si 0.90 20.14 29.59 -169.99 -5.03 15.11 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 29 C 0.06 0.88 11.12 -16.84 -0.19 0.70 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.08 0.38 8.13 -51.93 -0.42 -0.04 16 33 H 0.16 1.49 8.06 -52.48 -0.42 1.06 16 34 H 0.15 2.24 7.69 -52.49 -0.40 1.84 16 35 H 0.41 7.85 5.80 -40.82 -0.24 7.61 16 36 H 0.06 1.03 8.03 -51.93 -0.42 0.61 16 37 H 0.06 1.25 7.54 -51.93 -0.39 0.85 16 38 H 0.11 1.73 8.05 -52.49 -0.42 1.30 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 41 H 0.11 1.76 8.05 -52.49 -0.42 1.34 16 42 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 43 H 0.10 2.42 7.12 -51.93 -0.37 2.05 16 44 H 0.01 0.15 7.48 -51.93 -0.39 -0.23 16 45 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 46 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 47 H 0.17 2.08 8.06 -52.48 -0.42 1.65 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -30.60 383.26 -10.52 -41.11 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -6.67 Total: 13.15 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -4.14 Total: -6.84 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.54 Total: -55.82 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.60 -10.52 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948907106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.457 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds