Wall clock time and date at job start Sat Apr 11 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36453 * 124.85106 * 2 1 4 4 C 1.34481 * 108.85811 * 180.02562 * 3 2 1 5 5 C 1.46686 * 106.33157 * 0.23554 * 4 3 2 6 6 C 1.47265 * 126.94122 * 179.73896 * 5 4 3 7 7 O 1.21629 * 120.00049 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00039 * 0.02884 * 6 5 4 9 9 C 1.46501 * 119.99765 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47106 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.43652 * 64.92163 * 10 9 8 12 12 C 1.50805 * 109.44080 * 184.79924 * 10 9 8 13 13 C 1.38842 * 117.79440 * 289.14207 * 12 10 9 14 14 C 1.37960 * 120.50829 * 179.55987 * 13 12 10 15 15 C 1.38271 * 119.71456 * 359.96173 * 14 13 12 16 16 C 1.37906 * 119.82732 * 0.22125 * 15 14 13 17 17 C 1.37668 * 122.36290 * 109.02324 * 12 10 9 18 18 C 1.50608 * 122.86400 * 0.73568 * 17 12 10 19 19 C 1.52788 * 110.85808 * 340.27942 * 18 17 12 20 20 N 1.46685 * 109.43619 * 305.00468 * 10 9 8 21 21 C 1.36944 * 121.34841 * 104.21661 * 20 10 9 22 22 H 1.07997 * 119.99534 * 333.24907 * 21 20 10 23 23 C 1.38805 * 120.00215 * 153.24894 * 21 20 10 24 24 N 1.31618 * 120.00334 * 341.52304 * 23 21 20 25 25 Si 1.86802 * 120.00018 * 161.51589 * 23 21 20 26 26 H 1.48508 * 109.46956 * 90.00282 * 25 23 21 27 27 H 1.48504 * 109.47288 * 210.00130 * 25 23 21 28 28 H 1.48495 * 109.47205 * 330.00456 * 25 23 21 29 29 C 1.34654 * 124.85278 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46998 * 90.02455 * 1 2 3 31 31 H 1.08995 * 109.47136 * 210.02343 * 1 2 3 32 32 H 1.08996 * 109.47276 * 330.02843 * 1 2 3 33 33 H 1.08003 * 125.56592 * 359.97438 * 3 2 1 34 34 H 1.07994 * 126.83435 * 179.97438 * 4 3 2 35 35 H 0.96998 * 119.99894 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.47972 * 300.00365 * 9 8 6 37 37 H 1.09002 * 109.47100 * 60.00654 * 9 8 6 38 38 H 1.08001 * 119.75142 * 359.57668 * 13 12 10 39 39 H 1.07998 * 120.14266 * 179.97438 * 14 13 12 40 40 H 1.08004 * 120.08554 * 180.23722 * 15 14 13 41 41 H 1.07995 * 119.70929 * 179.97438 * 16 15 14 42 42 H 1.09004 * 109.19852 * 219.92055 * 18 17 12 43 43 H 1.08998 * 109.15919 * 100.61308 * 18 17 12 44 44 H 1.09001 * 109.77757 * 287.84747 * 19 18 17 45 45 H 1.08999 * 109.82690 * 167.05891 * 19 18 17 46 46 H 0.97000 * 120.00224 * 179.97438 * 24 23 21 47 47 H 1.08004 * 125.80090 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7493 -0.0006 5 6 3.5462 -0.7176 -0.0067 6 6 4.7284 -1.5956 -0.0149 7 8 4.5885 -2.8038 -0.0199 8 7 5.9653 -1.0604 -0.0167 9 6 7.1413 -1.9340 -0.0243 10 6 8.4109 -1.0801 -0.0243 11 1 8.4716 -0.5203 0.9091 12 6 9.6179 -1.9753 -0.1510 13 6 9.9531 -2.7681 0.9384 14 6 11.0410 -3.6145 0.8802 15 6 11.8024 -3.6738 -0.2725 16 6 11.4726 -2.8840 -1.3538 17 6 10.3795 -2.0277 -1.2966 18 6 10.0859 -1.1884 -2.5123 19 6 8.6419 -0.6897 -2.4932 20 7 8.3697 -0.1441 -1.1530 21 6 8.0889 1.1834 -0.9678 22 1 7.4912 1.4963 -0.1245 23 6 8.5726 2.1267 -1.8639 24 7 9.5746 1.8236 -2.6616 25 14 7.8011 3.8263 -1.9379 26 1 8.5028 4.7301 -0.9912 27 1 7.9205 4.3646 -3.3168 28 1 6.3667 3.7356 -1.5644 29 6 2.2345 -1.1050 0.0005 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 1.8827 2.1373 -0.0004 34 1 4.3980 1.4018 -0.0011 35 1 6.0768 -0.0969 -0.0123 36 1 7.1297 -2.5669 0.8630 37 1 7.1237 -2.5593 -0.9169 38 1 9.3576 -2.7221 1.8382 39 1 11.2967 -4.2283 1.7312 40 1 12.6531 -4.3371 -0.3259 41 1 12.0689 -2.9315 -2.2530 42 1 10.2466 -1.7874 -3.4087 43 1 10.7607 -0.3325 -2.5276 44 1 7.9631 -1.5173 -2.6994 45 1 8.5103 0.0907 -3.2427 46 1 9.9124 2.4827 -3.2880 47 1 1.8767 -2.1240 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948907106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:46 Heat of formation + Delta-G solvation = 48.326757 kcal Electronic energy + Delta-G solvation = -29500.817201 eV Core-core repulsion = 25649.145035 eV Total energy + Delta-G solvation = -3851.672166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.08878 -40.94953 -39.87780 -37.77672 -35.59839 -34.04247 -33.79203 -33.14257 -31.49485 -30.25601 -29.97013 -28.71615 -27.28704 -25.79900 -24.19481 -23.77423 -23.07050 -22.52241 -20.98424 -20.63306 -20.11650 -18.97224 -18.34256 -17.34983 -17.07883 -16.67123 -16.53160 -16.34197 -16.04093 -15.80075 -15.68725 -15.24435 -15.12233 -14.93049 -14.41087 -14.16324 -13.94117 -13.91117 -13.79056 -13.72582 -13.29954 -13.24558 -13.04241 -12.93987 -12.86369 -12.71697 -12.65195 -12.51362 -12.20702 -12.08983 -11.77137 -11.53603 -11.21544 -10.90922 -10.45691 -9.97729 -9.55449 -9.46372 -9.30031 -9.24474 -8.65238 -7.81309 -5.25965 0.58222 0.63163 0.82628 1.51640 1.53956 1.54811 1.62339 1.97791 2.53434 2.59878 2.67490 2.99434 3.35243 3.58866 3.99469 4.01907 4.05561 4.08890 4.10897 4.17685 4.32070 4.33531 4.38112 4.45740 4.49961 4.60003 4.62525 4.69778 4.76555 4.78862 4.81259 4.98818 4.99512 5.05595 5.11499 5.18778 5.25087 5.27171 5.54363 5.60732 5.65714 5.70909 5.71427 5.78544 5.85950 6.01377 6.09867 6.27323 6.39524 6.41766 6.81390 7.16225 7.43304 7.83738 8.42329 9.24431 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009764 B = 0.004130 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.084392 B = 6778.257688 C = 9100.336623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.442 5.442 3 C -0.007 4.007 4 C -0.190 4.190 5 C -0.266 4.266 6 C 0.579 3.421 7 O -0.607 6.607 8 N -0.702 5.702 9 C 0.130 3.870 10 C 0.199 3.801 11 H 0.073 0.927 12 C -0.103 4.103 13 C -0.124 4.124 14 C -0.131 4.131 15 C -0.123 4.123 16 C -0.141 4.141 17 C -0.072 4.072 18 C -0.083 4.083 19 C 0.171 3.829 20 N -0.588 5.588 21 C -0.257 4.257 22 H 0.074 0.926 23 C -0.039 4.039 24 N -0.918 5.918 25 Si 0.958 3.042 26 H -0.290 1.290 27 H -0.301 1.301 28 H -0.263 1.263 29 C 0.072 3.928 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.201 0.799 34 H 0.139 0.861 35 H 0.409 0.591 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.126 0.874 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.002 0.998 45 H 0.066 0.934 46 H 0.247 0.753 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.634 -4.688 6.358 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.116 5.116 3 C -0.134 4.134 4 C -0.214 4.214 5 C -0.277 4.277 6 C 0.370 3.630 7 O -0.491 6.491 8 N -0.351 5.351 9 C 0.003 3.997 10 C 0.091 3.909 11 H 0.091 0.909 12 C -0.104 4.104 13 C -0.143 4.143 14 C -0.149 4.149 15 C -0.140 4.140 16 C -0.159 4.159 17 C -0.072 4.072 18 C -0.121 4.121 19 C 0.046 3.954 20 N -0.309 5.309 21 C -0.386 4.386 22 H 0.092 0.908 23 C -0.235 4.235 24 N -0.562 5.562 25 Si 0.787 3.213 26 H -0.218 1.218 27 H -0.228 1.228 28 H -0.187 1.187 29 C -0.065 4.065 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.217 0.783 34 H 0.157 0.843 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.020 0.980 45 H 0.084 0.916 46 H 0.057 0.943 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.027 -5.322 6.231 14.553 hybrid contribution 0.351 1.463 -0.567 1.608 sum -11.676 -3.859 5.664 13.539 Atomic orbital electron populations 1.22462 0.73924 1.06477 1.04887 1.43905 1.08419 1.04850 1.54458 1.22182 0.89693 0.92676 1.08853 1.22231 0.97700 0.92698 1.08788 1.20414 0.92712 0.94107 1.20418 1.17868 0.83365 0.86861 0.74917 1.90662 1.87431 1.16254 1.54794 1.45723 1.04704 1.11339 1.73376 1.21640 0.85386 0.92652 1.00008 1.19613 0.89449 0.89551 0.92318 0.90928 1.20117 0.97639 0.98289 0.94403 1.21333 0.98423 0.96574 0.97941 1.21329 0.95289 0.99321 0.98957 1.21336 1.00385 0.99303 0.93011 1.21387 0.97069 0.97365 1.00069 1.19881 0.95415 0.96317 0.95610 1.20727 1.00217 0.97466 0.93740 1.20591 0.91731 0.94764 0.88335 1.44160 1.81729 1.04151 1.00834 1.19309 1.25449 0.82409 1.11438 0.90832 1.25638 0.96675 1.00570 1.00641 1.70131 1.25031 1.35066 1.26004 0.85430 0.79231 0.80630 0.76059 1.21764 1.22753 1.18727 1.21890 0.89329 0.92828 1.02443 0.89525 0.88175 0.87382 0.78259 0.84338 0.75338 0.91577 0.94595 0.85016 0.83306 0.83483 0.85584 0.92162 0.91312 0.98018 0.91576 0.94341 0.79838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 11.04 127.77 1.41 1.95 16 2 N -0.44 -8.69 3.09 -547.90 -1.69 -10.38 16 3 C -0.01 -0.16 11.34 83.11 0.94 0.79 16 4 C -0.19 -5.67 10.56 23.62 0.25 -5.42 16 5 C -0.27 -8.97 6.29 -19.04 -0.12 -9.09 16 6 C 0.58 23.38 7.81 86.62 0.68 24.06 16 7 O -0.61 -27.50 16.91 -4.12 -0.07 -27.57 16 8 N -0.70 -28.07 5.38 -466.52 -2.51 -30.59 16 9 C 0.13 5.22 5.01 86.38 0.43 5.65 16 10 C 0.20 8.30 2.50 44.24 0.11 8.41 16 11 H 0.07 3.04 7.98 -2.39 -0.02 3.02 16 12 C -0.10 -4.06 5.17 -19.82 -0.10 -4.16 16 13 C -0.12 -4.05 9.33 22.35 0.21 -3.84 16 14 C -0.13 -3.64 10.05 22.21 0.22 -3.41 16 15 C -0.12 -3.45 10.04 22.20 0.22 -3.22 16 16 C -0.14 -4.76 9.59 22.37 0.21 -4.54 16 17 C -0.07 -2.92 5.76 -19.85 -0.11 -3.04 16 18 C -0.08 -3.69 5.77 29.75 0.17 -3.52 16 19 C 0.17 8.31 5.46 86.17 0.47 8.78 16 20 N -0.59 -28.11 2.30 -680.10 -1.57 -29.68 16 21 C -0.26 -13.00 8.73 84.03 0.73 -12.27 16 22 H 0.07 3.55 7.29 -2.91 -0.02 3.53 16 23 C -0.04 -2.02 4.93 84.86 0.42 -1.60 16 24 N -0.92 -50.81 10.13 21.65 0.22 -50.59 16 25 Si 0.96 42.46 29.59 68.60 2.03 44.49 16 26 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 28 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 29 C 0.07 1.91 11.12 83.92 0.93 2.85 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.59 8.13 -2.39 -0.02 0.57 16 32 H 0.11 0.47 8.13 -2.39 -0.02 0.45 16 33 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.14 4.28 7.69 -2.91 -0.02 4.26 16 35 H 0.41 16.43 5.80 -92.71 -0.54 15.89 16 36 H 0.07 2.49 8.03 -2.39 -0.02 2.47 16 37 H 0.04 1.60 7.54 -2.39 -0.02 1.58 16 38 H 0.13 3.74 8.05 -2.91 -0.02 3.71 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 40 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 41 H 0.13 3.80 8.05 -2.91 -0.02 3.77 16 42 H 0.06 2.42 8.11 -2.38 -0.02 2.40 16 43 H 0.07 3.49 7.12 -2.39 -0.02 3.47 16 44 H 0.00 0.09 7.48 -2.39 -0.02 0.07 16 45 H 0.07 3.56 5.95 -2.39 -0.01 3.55 16 46 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 47 H 0.18 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -70.16 383.26 3.94 -66.23 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: 0.44 Total: 39.72 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 7.08 Total: -1.64 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -5.55 Total: -121.23 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.07 Total: -27.57 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -70.16 3.94 -66.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948907106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.554 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds