Wall clock time and date at job start Sat Apr 11 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47279 * 2 1 4 4 C 1.34783 * 120.00238 * 243.65322 * 3 2 1 5 5 O 1.21595 * 120.00099 * 183.21634 * 4 3 2 6 6 C 1.47431 * 119.99590 * 3.21150 * 4 3 2 7 7 C 1.38740 * 120.33440 * 35.17023 * 6 4 3 8 8 C 1.38872 * 120.72682 * 179.97438 * 7 6 4 9 9 C 1.36354 * 121.05566 * 0.02562 * 8 7 6 10 10 C 1.40436 * 120.08850 * 0.02562 * 9 8 7 11 11 C 1.40801 * 121.27176 * 179.97438 * 10 9 8 12 12 C 1.36640 * 118.15521 * 179.97438 * 11 10 9 13 13 C 1.39225 * 119.90843 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.15224 * 180.02562 * 13 12 11 15 15 N 1.31232 * 121.69976 * 359.97438 * 13 12 11 16 16 C 1.33355 * 121.34557 * 359.74316 * 15 13 12 17 17 C 1.46507 * 120.00108 * 63.65162 * 3 2 1 18 18 C 1.53949 * 113.74230 * 223.23054 * 17 3 2 19 19 N 1.47813 * 86.03663 * 222.08451 * 18 17 3 20 20 C 1.36930 * 134.45760 * 204.64620 * 19 18 17 21 21 H 1.08002 * 120.00468 * 179.86881 * 20 19 18 22 22 C 1.38816 * 119.99990 * 359.86438 * 20 19 18 23 23 N 1.31625 * 119.99737 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00253 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47101 * 59.99954 * 24 22 20 26 26 H 1.48497 * 109.47154 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46857 * 300.00119 * 24 22 20 28 28 C 1.47584 * 91.05067 * 24.55051 * 19 18 17 29 29 H 1.09001 * 109.47053 * 59.99421 * 1 2 3 30 30 H 1.08999 * 109.47219 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46885 * 300.00449 * 1 2 3 32 32 H 1.09002 * 109.46885 * 239.99551 * 2 1 3 33 33 H 1.09007 * 109.47042 * 120.00126 * 2 1 3 34 34 H 1.08000 * 119.63721 * 359.97438 * 7 6 4 35 35 H 1.07993 * 119.47220 * 180.02562 * 8 7 6 36 36 H 1.08004 * 119.95473 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.92390 * 359.97438 * 11 10 9 38 38 H 1.07993 * 120.04292 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.47284 * 89.99908 * 14 13 12 40 40 H 1.09008 * 109.47467 * 210.00516 * 14 13 12 41 41 H 1.09005 * 109.47457 * 330.00005 * 14 13 12 42 42 H 1.09000 * 112.94355 * 354.82421 * 17 3 2 43 43 H 1.09006 * 113.76853 * 336.35065 * 18 17 3 44 44 H 1.09002 * 113.76736 * 107.74204 * 18 17 3 45 45 H 0.96998 * 119.99313 * 180.02562 * 23 22 20 46 46 H 1.09005 * 113.77093 * 221.15398 * 28 19 18 47 47 H 1.08999 * 113.77036 * 89.75641 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.7314 1.8439 -1.0460 5 8 3.1865 2.9711 -1.0205 6 6 2.9596 0.9831 -2.2210 7 6 1.9788 0.0962 -2.6409 8 6 2.1849 -0.7180 -3.7469 9 6 3.3531 -0.6692 -4.4484 10 6 4.3730 0.2135 -4.0571 11 6 5.5893 0.2840 -4.7630 12 6 6.5375 1.1659 -4.3270 13 6 6.2850 1.9626 -3.2135 14 6 7.3426 2.9298 -2.7478 15 7 5.1492 1.8937 -2.5596 16 6 4.1810 1.0581 -2.9371 17 6 1.7317 2.2595 1.1370 18 6 1.3061 3.6818 0.7295 19 7 2.1789 4.1470 1.8281 20 6 2.2208 5.2708 2.6093 21 1 2.9816 5.3723 3.3691 22 6 1.2854 6.2798 2.4247 23 7 0.3579 6.1559 1.4990 24 14 1.3430 7.8132 3.4899 25 1 2.6486 8.4961 3.3044 26 1 0.2436 8.7306 3.0966 27 1 1.1823 7.4315 4.9160 28 6 2.9850 2.9135 1.7464 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.0448 0.0384 -2.1018 35 1 1.4075 -1.4007 -4.0563 36 1 3.4943 -1.3102 -5.3061 37 1 5.7677 -0.3416 -5.6251 38 1 7.4816 1.2447 -4.8454 39 1 7.2017 3.8894 -3.2451 40 1 7.2624 3.0643 -1.6690 41 1 8.3289 2.5352 -2.9923 42 1 1.0742 1.7991 1.8744 43 1 1.6518 3.9770 -0.2612 44 1 0.2478 3.8869 0.8907 45 1 -0.2954 6.8611 1.3698 46 1 3.2646 2.5062 2.7181 47 1 3.8249 2.9824 1.0551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950596197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:58 Heat of formation + Delta-G solvation = 109.987022 kcal Electronic energy + Delta-G solvation = -29854.772938 eV Core-core repulsion = 26005.774561 eV Total energy + Delta-G solvation = -3848.998376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.19599 -39.75244 -37.55396 -36.53610 -35.32454 -33.48599 -32.09879 -31.91779 -30.33771 -30.04621 -27.97423 -27.22566 -24.54106 -24.18898 -24.11578 -23.10768 -22.56512 -22.10030 -20.15069 -18.76568 -18.25391 -17.01606 -16.55461 -16.51818 -16.06635 -15.47731 -15.14341 -14.86828 -14.63188 -14.38668 -14.22053 -14.00292 -13.72691 -13.55981 -13.16620 -13.06259 -12.91469 -12.62335 -12.29594 -12.25792 -12.18217 -12.00077 -11.62045 -11.51857 -11.42299 -11.23851 -11.12421 -10.90621 -10.73352 -10.62477 -10.43109 -9.93839 -9.87288 -9.54977 -9.32214 -9.01374 -8.76357 -8.47400 -8.30840 -7.90790 -6.62569 -5.58716 -2.88586 0.09631 0.67339 1.70878 2.65640 3.30147 3.42314 3.50448 3.54243 3.55908 4.05066 4.09779 4.36151 4.52726 4.61141 4.63513 4.67184 4.83903 4.91004 5.00628 5.12376 5.18076 5.24014 5.36360 5.43809 5.48753 5.54179 5.59962 5.69762 5.72585 5.74126 5.77594 5.80779 5.90237 5.94196 5.98139 6.02750 6.07429 6.15506 6.30731 6.37420 6.51904 6.66063 6.76385 6.82468 7.13722 7.45392 7.72068 7.79192 7.92306 8.02880 8.15816 8.79218 9.22624 9.88710 10.81704 11.58749 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.003548 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.633380 B = 7889.323570 C = 9428.088463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.079 3.921 3 N -0.600 5.600 4 C 0.550 3.450 5 O -0.476 6.476 6 C -0.096 4.096 7 C -0.082 4.082 8 C -0.127 4.127 9 C -0.079 4.079 10 C -0.116 4.116 11 C -0.058 4.058 12 C -0.172 4.172 13 C 0.160 3.840 14 C -0.108 4.108 15 N -0.444 5.444 16 C 0.168 3.832 17 C 0.093 3.907 18 C 0.158 3.842 19 N -0.603 5.603 20 C -0.214 4.214 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.111 3.889 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.252 0.748 46 H 0.034 0.966 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.996 -20.532 -14.418 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.044 4.044 3 N -0.335 5.335 4 C 0.336 3.664 5 O -0.348 6.348 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.145 4.145 9 C -0.098 4.098 10 C -0.118 4.118 11 C -0.084 4.084 12 C -0.192 4.192 13 C 0.007 3.993 14 C -0.165 4.165 15 N -0.152 5.152 16 C 0.044 3.956 17 C -0.010 4.010 18 C 0.032 3.968 19 N -0.330 5.330 20 C -0.342 4.342 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.741 3.259 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.016 4.016 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.894 -19.057 -13.499 24.350 hybrid contribution 0.092 0.243 -0.322 0.414 sum 6.986 -18.813 -13.821 24.367 Atomic orbital electron populations 1.22214 0.95639 1.01878 1.03358 1.22118 0.94788 0.84036 1.03475 1.47997 1.53844 1.12104 1.19513 1.17857 0.79469 0.86968 0.82115 1.90900 1.46437 1.18159 1.79346 1.20088 0.93742 0.98426 0.97721 1.21854 0.99343 0.93234 0.95744 1.20834 0.97901 1.00150 0.95634 1.21082 0.92711 0.96887 0.99100 1.18793 0.96167 0.99303 0.97577 1.21418 0.91861 0.96990 0.98151 1.21755 1.00962 0.98044 0.98449 1.21662 0.92691 0.94148 0.90773 1.20799 0.94663 0.97447 1.03625 1.68062 0.99863 1.17731 1.29555 1.18566 0.92894 0.92083 0.92016 1.23994 0.99158 0.90788 0.87095 1.22709 0.96590 0.84854 0.92683 1.45661 1.32018 1.17525 1.37755 1.18947 1.11213 0.93728 1.10308 0.90464 1.24756 0.98353 0.98402 0.99110 1.69832 1.18524 1.33751 1.34746 0.86217 0.76986 0.83014 0.79659 1.21302 1.21669 1.21237 1.22946 0.94592 0.87275 0.96790 0.92114 0.91722 0.91407 0.88822 0.91548 0.83361 0.84949 0.85134 0.84341 0.84569 0.89938 0.89863 0.90737 0.87982 0.92815 0.91704 0.93843 0.94790 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.33 37.16 0.35 -1.47 16 2 C 0.08 0.96 5.65 -4.05 -0.02 0.94 16 3 N -0.60 -10.40 2.85 -169.15 -0.48 -10.88 16 4 C 0.55 10.69 6.67 -12.51 -0.08 10.61 16 5 O -0.48 -11.58 11.67 5.28 0.06 -11.51 16 6 C -0.10 -1.52 5.39 -104.61 -0.56 -2.08 16 7 C -0.08 -0.95 7.30 -39.16 -0.29 -1.23 16 8 C -0.13 -1.13 9.93 -40.03 -0.40 -1.53 16 9 C -0.08 -0.71 9.75 -39.43 -0.38 -1.10 16 10 C -0.12 -1.39 5.74 -106.83 -0.61 -2.00 16 11 C -0.06 -0.56 9.90 -39.19 -0.39 -0.94 16 12 C -0.17 -1.73 9.64 -39.79 -0.38 -2.11 16 13 C 0.16 2.16 6.78 -82.48 -0.56 1.60 16 14 C -0.11 -1.19 10.14 36.00 0.37 -0.82 16 15 N -0.44 -7.72 8.89 -7.01 -0.06 -7.78 16 16 C 0.17 2.66 6.58 -84.58 -0.56 2.10 16 17 C 0.09 1.93 4.19 -70.13 -0.29 1.63 16 18 C 0.16 4.15 6.79 -2.84 -0.02 4.13 16 19 N -0.60 -17.16 3.70 -177.86 -0.66 -17.82 16 20 C -0.21 -6.50 10.70 -15.06 -0.16 -6.67 16 21 H 0.08 2.26 7.83 -52.49 -0.41 1.84 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.92 -29.13 11.39 55.49 0.63 -28.50 16 24 Si 0.91 23.48 29.55 -169.99 -5.02 18.45 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.11 2.64 8.27 -2.96 -0.02 2.62 16 29 H 0.06 0.66 7.15 -51.93 -0.37 0.29 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.82 7.24 -51.93 -0.38 0.44 16 32 H 0.09 1.00 3.90 -51.93 -0.20 0.79 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.15 1.50 4.28 -52.49 -0.22 1.28 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 42 H 0.10 1.94 7.33 -51.93 -0.38 1.56 16 43 H 0.05 1.56 5.68 -51.93 -0.29 1.27 16 44 H 0.06 1.83 7.16 -51.93 -0.37 1.46 16 45 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 1.33 6.33 -51.93 -0.33 1.00 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -38.80 373.86 -10.34 -49.15 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.32 Total: 0.00 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -4.12 Total: 3.26 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -0.57 Total: -64.98 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.06 Total: -11.51 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.80 -10.34 -49.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950596197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.134 kcal (2) G-P(sol) polarization free energy of solvation -38.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds