Wall clock time and date at job start Sat Apr 11 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47279 * 2 1 4 4 C 1.34783 * 120.00238 * 243.65322 * 3 2 1 5 5 O 1.21595 * 120.00099 * 183.21634 * 4 3 2 6 6 C 1.47431 * 119.99590 * 3.21150 * 4 3 2 7 7 C 1.38740 * 120.33440 * 35.17023 * 6 4 3 8 8 C 1.38872 * 120.72682 * 179.97438 * 7 6 4 9 9 C 1.36354 * 121.05566 * 0.02562 * 8 7 6 10 10 C 1.40436 * 120.08850 * 0.02562 * 9 8 7 11 11 C 1.40801 * 121.27176 * 179.97438 * 10 9 8 12 12 C 1.36640 * 118.15521 * 179.97438 * 11 10 9 13 13 C 1.39225 * 119.90843 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.15224 * 180.02562 * 13 12 11 15 15 N 1.31232 * 121.69976 * 359.97438 * 13 12 11 16 16 C 1.33355 * 121.34557 * 359.74316 * 15 13 12 17 17 C 1.46507 * 120.00108 * 63.65162 * 3 2 1 18 18 C 1.53949 * 113.74230 * 223.23054 * 17 3 2 19 19 N 1.47813 * 86.03663 * 222.08451 * 18 17 3 20 20 C 1.36930 * 134.45760 * 204.64620 * 19 18 17 21 21 H 1.08002 * 120.00468 * 179.86881 * 20 19 18 22 22 C 1.38816 * 119.99990 * 359.86438 * 20 19 18 23 23 N 1.31625 * 119.99737 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00253 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47101 * 59.99954 * 24 22 20 26 26 H 1.48497 * 109.47154 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46857 * 300.00119 * 24 22 20 28 28 C 1.47584 * 91.05067 * 24.55051 * 19 18 17 29 29 H 1.09001 * 109.47053 * 59.99421 * 1 2 3 30 30 H 1.08999 * 109.47219 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46885 * 300.00449 * 1 2 3 32 32 H 1.09002 * 109.46885 * 239.99551 * 2 1 3 33 33 H 1.09007 * 109.47042 * 120.00126 * 2 1 3 34 34 H 1.08000 * 119.63721 * 359.97438 * 7 6 4 35 35 H 1.07993 * 119.47220 * 180.02562 * 8 7 6 36 36 H 1.08004 * 119.95473 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.92390 * 359.97438 * 11 10 9 38 38 H 1.07993 * 120.04292 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.47284 * 89.99908 * 14 13 12 40 40 H 1.09008 * 109.47467 * 210.00516 * 14 13 12 41 41 H 1.09005 * 109.47457 * 330.00005 * 14 13 12 42 42 H 1.09000 * 112.94355 * 354.82421 * 17 3 2 43 43 H 1.09006 * 113.76853 * 336.35065 * 18 17 3 44 44 H 1.09002 * 113.76736 * 107.74204 * 18 17 3 45 45 H 0.96998 * 119.99313 * 180.02562 * 23 22 20 46 46 H 1.09005 * 113.77093 * 221.15398 * 28 19 18 47 47 H 1.08999 * 113.77036 * 89.75641 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.7314 1.8439 -1.0460 5 8 3.1865 2.9711 -1.0205 6 6 2.9596 0.9831 -2.2210 7 6 1.9788 0.0962 -2.6409 8 6 2.1849 -0.7180 -3.7469 9 6 3.3531 -0.6692 -4.4484 10 6 4.3730 0.2135 -4.0571 11 6 5.5893 0.2840 -4.7630 12 6 6.5375 1.1659 -4.3270 13 6 6.2850 1.9626 -3.2135 14 6 7.3426 2.9298 -2.7478 15 7 5.1492 1.8937 -2.5596 16 6 4.1810 1.0581 -2.9371 17 6 1.7317 2.2595 1.1370 18 6 1.3061 3.6818 0.7295 19 7 2.1789 4.1470 1.8281 20 6 2.2208 5.2708 2.6093 21 1 2.9816 5.3723 3.3691 22 6 1.2854 6.2798 2.4247 23 7 0.3579 6.1559 1.4990 24 14 1.3430 7.8132 3.4899 25 1 2.6486 8.4961 3.3044 26 1 0.2436 8.7306 3.0966 27 1 1.1823 7.4315 4.9160 28 6 2.9850 2.9135 1.7464 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.0448 0.0384 -2.1018 35 1 1.4075 -1.4007 -4.0563 36 1 3.4943 -1.3102 -5.3061 37 1 5.7677 -0.3416 -5.6251 38 1 7.4816 1.2447 -4.8454 39 1 7.2017 3.8894 -3.2451 40 1 7.2624 3.0643 -1.6690 41 1 8.3289 2.5352 -2.9923 42 1 1.0742 1.7991 1.8744 43 1 1.6518 3.9770 -0.2612 44 1 0.2478 3.8869 0.8907 45 1 -0.2954 6.8611 1.3698 46 1 3.2646 2.5062 2.7181 47 1 3.8249 2.9824 1.0551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950596197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:57 Heat of formation + Delta-G solvation = 83.307755 kcal Electronic energy + Delta-G solvation = -29855.929837 eV Core-core repulsion = 26005.774561 eV Total energy + Delta-G solvation = -3850.155276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21337 -41.13133 -38.83788 -38.01768 -36.65339 -34.52513 -34.03118 -32.93832 -31.33756 -31.28835 -29.32595 -28.77732 -26.60961 -25.80919 -24.98943 -24.34614 -23.51448 -23.24264 -21.88553 -19.97216 -19.25680 -18.75407 -18.18492 -17.56792 -17.16319 -16.95143 -16.74736 -16.14274 -15.87653 -15.75437 -15.55742 -15.31130 -14.83991 -14.74269 -14.35345 -14.10967 -13.98593 -13.88078 -13.73502 -13.66810 -13.38345 -13.08213 -13.01782 -12.91432 -12.81994 -12.60783 -12.53749 -12.42699 -12.22888 -12.01493 -11.92767 -11.76283 -11.48472 -11.40737 -11.00887 -10.60187 -10.12155 -9.61623 -9.50817 -9.17300 -8.90290 -7.91696 -5.25805 -0.75825 -0.17134 0.81870 1.39838 1.46355 1.52147 1.80203 1.95588 2.15695 2.47859 3.10788 3.23640 3.26333 3.45449 3.51194 3.71067 3.80102 3.85454 3.95271 3.98866 4.07493 4.19039 4.21008 4.34466 4.38644 4.45845 4.54011 4.57422 4.64114 4.68350 4.72143 4.84380 4.93153 4.96047 4.97689 5.00999 5.03058 5.08021 5.15056 5.20361 5.25273 5.30286 5.36893 5.44275 5.46622 5.62277 5.86615 5.88373 5.91809 6.55277 6.88579 7.11709 7.38218 7.57227 8.56244 9.25630 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.003548 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.633380 B = 7889.323570 C = 9428.088463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.075 3.925 3 N -0.599 5.599 4 C 0.544 3.456 5 O -0.544 6.544 6 C -0.147 4.147 7 C -0.062 4.062 8 C -0.128 4.128 9 C -0.055 4.055 10 C -0.134 4.134 11 C -0.043 4.043 12 C -0.177 4.177 13 C 0.140 3.860 14 C -0.106 4.106 15 N -0.515 5.515 16 C 0.136 3.864 17 C 0.131 3.869 18 C 0.160 3.840 19 N -0.630 5.630 20 C -0.240 4.240 21 H 0.082 0.918 22 C -0.069 4.069 23 N -0.954 5.954 24 Si 0.987 3.013 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.268 1.268 28 C 0.111 3.889 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.189 0.811 38 H 0.175 0.825 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.113 0.887 42 H 0.128 0.872 43 H 0.018 0.982 44 H 0.038 0.962 45 H 0.248 0.752 46 H 0.054 0.946 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 -24.559 -16.559 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.046 4.046 3 N -0.332 5.332 4 C 0.333 3.667 5 O -0.421 6.421 6 C -0.151 4.151 7 C -0.082 4.082 8 C -0.145 4.145 9 C -0.073 4.073 10 C -0.136 4.136 11 C -0.068 4.068 12 C -0.196 4.196 13 C -0.012 4.012 14 C -0.163 4.163 15 N -0.225 5.225 16 C 0.013 3.987 17 C 0.027 3.973 18 C 0.034 3.966 19 N -0.357 5.357 20 C -0.368 4.368 21 H 0.099 0.901 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.814 3.186 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.193 1.193 28 C -0.015 4.015 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.178 0.822 35 H 0.196 0.804 36 H 0.197 0.803 37 H 0.206 0.794 38 H 0.192 0.808 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.131 0.869 42 H 0.146 0.854 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.910 -23.166 -15.638 28.792 hybrid contribution 0.156 1.402 0.205 1.425 sum 7.066 -21.764 -15.433 27.601 Atomic orbital electron populations 1.22199 0.93976 1.04128 1.02283 1.22484 0.96010 0.80879 1.05259 1.48007 1.53556 1.13723 1.17950 1.18627 0.78086 0.86664 0.83311 1.90847 1.49176 1.21202 1.80922 1.19889 0.96163 1.01117 0.97934 1.22104 0.98219 0.91625 0.96209 1.21311 0.99199 0.99880 0.94152 1.21674 0.91177 0.95117 0.99342 1.19175 0.98342 0.99377 0.96720 1.22005 0.90170 0.96273 0.98379 1.22080 1.02885 0.97334 0.97327 1.22152 0.92051 0.95005 0.92000 1.20854 0.96409 0.97595 1.01482 1.67974 1.01840 1.20236 1.32418 1.18914 0.92732 0.93256 0.93797 1.23286 0.96851 0.89184 0.88018 1.22447 0.94515 0.88978 0.90679 1.46094 1.33381 1.18327 1.37864 1.19421 1.11496 0.95068 1.10865 0.90060 1.25743 0.97920 1.01767 1.00728 1.70064 1.19164 1.34540 1.36515 0.85041 0.76839 0.78357 0.78393 1.20822 1.21559 1.19318 1.22957 0.94861 0.86318 0.97372 0.92627 0.87694 0.93117 0.86799 0.90015 0.82195 0.80378 0.80273 0.79371 0.80778 0.90164 0.93038 0.86872 0.85406 0.96411 0.94336 0.94283 0.92761 0.95481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 9.33 71.98 0.67 -2.52 16 2 C 0.07 1.71 5.65 86.38 0.49 2.20 16 3 N -0.60 -21.70 2.85 -807.33 -2.30 -24.00 16 4 C 0.54 22.91 6.67 86.66 0.58 23.49 16 5 O -0.54 -29.58 11.67 -4.02 -0.05 -29.62 16 6 C -0.15 -4.83 5.39 -19.86 -0.11 -4.94 16 7 C -0.06 -1.32 7.30 22.54 0.16 -1.15 16 8 C -0.13 -1.67 9.93 21.98 0.22 -1.45 16 9 C -0.05 -0.71 9.75 22.37 0.22 -0.49 16 10 C -0.13 -2.88 5.74 -21.29 -0.12 -3.00 16 11 C -0.04 -0.66 9.90 22.52 0.22 -0.44 16 12 C -0.18 -3.20 9.64 22.13 0.21 -2.99 16 13 C 0.14 3.95 6.78 42.88 0.29 4.24 16 14 C -0.11 -2.54 10.14 71.24 0.72 -1.82 16 15 N -0.51 -19.49 8.89 -176.10 -1.57 -21.05 16 16 C 0.14 4.46 6.58 40.61 0.27 4.73 16 17 C 0.13 5.73 4.19 46.75 0.20 5.93 16 18 C 0.16 9.12 6.79 86.44 0.59 9.70 16 19 N -0.63 -38.13 3.70 -716.62 -2.65 -40.78 16 20 C -0.24 -15.29 10.70 84.04 0.90 -14.39 16 21 H 0.08 4.93 7.83 -2.91 -0.02 4.91 16 22 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 23 N -0.95 -63.40 11.39 21.65 0.25 -63.15 16 24 Si 0.99 49.84 29.55 68.60 2.03 51.86 16 25 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 27 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 28 C 0.11 5.64 8.27 86.49 0.72 6.36 16 29 H 0.05 1.12 7.15 -2.39 -0.02 1.10 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.15 7.24 -2.39 -0.02 1.14 16 32 H 0.11 2.19 3.90 -2.39 -0.01 2.18 16 33 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.16 2.87 4.28 -2.91 -0.01 2.86 16 35 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 37 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.11 1.69 8.07 -2.38 -0.02 1.67 16 42 H 0.13 4.92 7.33 -2.39 -0.02 4.90 16 43 H 0.02 1.16 5.68 -2.38 -0.01 1.15 16 44 H 0.04 2.35 7.16 -2.39 -0.02 2.33 16 45 H 0.25 15.87 8.31 -92.71 -0.77 15.10 16 46 H 0.05 2.49 8.14 -2.38 -0.02 2.47 16 47 H 0.03 1.54 6.33 -2.39 -0.02 1.52 16 Total: -1.00 -98.13 373.86 3.40 -94.74 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.00 Total: 12.44 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 6.69 Total: 19.56 kcal Atomic # 7 Polarization: -142.71 SS G_CDS: -6.27 Total: -148.98 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.05 Total: -29.62 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.03 Total: 51.86 kcal Total: -98.13 3.40 -94.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950596197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.045 kcal (2) G-P(sol) polarization free energy of solvation -98.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds